RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 A2ML1A8K2U0 1454 aa12.95□□□□□ -0.34
VIM-202ENST00000421459 IQSEC2Q5JU85 1478 aa12.95□□□□□ -0.34
VIM-202ENST00000421459 CCDC141Q6ZP82 1450 aa12.95□□□□□ -0.34
VIM-202ENST00000421459 ZNF142P52746 1687 aaPredicted RBP12.94□□□□□ -0.34
VIM-202ENST00000421459 SOCS7O14512 581 aa12.94□□□□□ -0.34
VIM-202ENST00000421459 KANK4Q5T7N3 995 aaPredicted RBP12.94□□□□□ -0.34
VIM-202ENST00000421459 DNMT1P26358 1616 aaKnown RBP12.94□□□□□ -0.34
VIM-202ENST00000421459 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.94□□□□□ -0.34
VIM-202ENST00000421459 TSPY4P0CV99 314 aa12.92□□□□□ -0.34
VIM-202ENST00000421459 TSPY10P0CW01 314 aa12.92□□□□□ -0.34
VIM-202ENST00000421459 PIP4K2BP78356 416 aa12.92□□□□□ -0.34
VIM-202ENST00000421459 SPATA31D1Q6ZQQ2 1576 aa12.92□□□□□ -0.34
VIM-202ENST00000421459 SCAF1Q9H7N4 1312 aaKnown RBP12.91□□□□□ -0.34
VIM-202ENST00000421459 RSPH4AQ5TD94 716 aa12.91□□□□□ -0.34
VIM-202ENST00000421459 PZPP20742 1482 aa12.91□□□□□ -0.34
VIM-202ENST00000421459 MIA2Q96PC5 1412 aa12.9□□□□□ -0.34
VIM-202ENST00000421459 KDM5DQ9BY66 1539 aa12.9□□□□□ -0.34
VIM-202ENST00000421459 HSPA1LP34931 641 aa12.89□□□□□ -0.35
VIM-202ENST00000421459 ANKLE2Q86XL3 938 aa12.89□□□□□ -0.35
VIM-202ENST00000421459 LRRC9Q6ZRR7 1453 aa12.89□□□□□ -0.35
VIM-202ENST00000421459 NEURL4Q96JN8 1562 aa12.89□□□□□ -0.35
VIM-202ENST00000421459 THEMISQ8N1K5 641 aaPredicted RBP12.88□□□□□ -0.35
VIM-202ENST00000421459 SENP3Q9H4L4 574 aaPredicted RBP12.87□□□□□ -0.35
VIM-202ENST00000421459 VPS8Q8N3P4 1428 aa12.87□□□□□ -0.35
VIM-202ENST00000421459 ARHGEF5Q12774 1597 aa12.86□□□□□ -0.35
VIM-202ENST00000421459 SHANK2Q9UPX8 1470 aa12.86□□□□□ -0.35
VIM-202ENST00000421459 UGGT1Q9NYU2 1555 aa12.85□□□□□ -0.35
VIM-202ENST00000421459 NPHP4O75161 1426 aaPredicted RBP12.84□□□□□ -0.35
VIM-202ENST00000421459 ABCC3O15438 1527 aa12.83□□□□□ -0.35
VIM-202ENST00000421459 VWDEQ8N2E2 1590 aa12.83□□□□□ -0.36
VIM-202ENST00000421459 TOM1O60784 492 aa12.83□□□□□ -0.36
VIM-202ENST00000421459 RRP7BPQ9NSQ0 103 aa12.83□□□□□ -0.36
VIM-202ENST00000421459 NLRP1Q9C000 1473 aa12.83□□□□□ -0.36
VIM-202ENST00000421459 FAM135AQ9P2D6 1515 aa12.83□□□□□ -0.36
VIM-202ENST00000421459 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.81□□□□□ -0.362e-9■■□□□ 12.6
VIM-202ENST00000421459 POLR1AO95602 1720 aaPredicted RBP12.81□□□□□ -0.36
VIM-202ENST00000421459 CPS1P31327 1500 aa12.81□□□□□ -0.36
VIM-202ENST00000421459 MYOM3Q5VTT5 1437 aa12.8□□□□□ -0.36
VIM-202ENST00000421459 MED14O60244 1454 aa12.8□□□□□ -0.36
VIM-202ENST00000421459 ERVK-7P63135 1459 aa12.8□□□□□ -0.36
VIM-202ENST00000421459 LTKP29376 864 aa12.8□□□□□ -0.36
VIM-202ENST00000421459 MAST1Q9Y2H9 1570 aa12.8□□□□□ -0.36
VIM-202ENST00000421459 MROH1Q8NDA8 1641 aa12.8□□□□□ -0.36
VIM-202ENST00000421459 RNF17Q9BXT8 1623 aaKnown RBP12.79□□□□□ -0.36
VIM-202ENST00000421459 ALKQ9UM73 1620 aa12.79□□□□□ -0.36
VIM-202ENST00000421459 CHIC2Q9UKJ5 165 aa12.78□□□□□ -0.36
VIM-202ENST00000421459 ABCC5O15440 1437 aa12.78□□□□□ -0.36
VIM-202ENST00000421459 TXNDC2Q86VQ3 553 aa12.77□□□□□ -0.37
VIM-202ENST00000421459 KIF15Q9NS87 1388 aa12.77□□□□□ -0.37
VIM-202ENST00000421459 LRRC7Q96NW7 1537 aa12.77□□□□□ -0.37
VIM-202ENST00000421459 DEPDC5O75140 1603 aa12.76□□□□□ -0.37
VIM-202ENST00000421459 STRCP1A6NGW2 1772 aa12.76□□□□□ -0.37
VIM-202ENST00000421459 CEP152O94986 1710 aa12.75□□□□□ -0.37
VIM-202ENST00000421459 IQGAP1P46940 1657 aa12.75□□□□□ -0.37
VIM-202ENST00000421459 MAP3K1Q13233 1512 aa12.75□□□□□ -0.37
VIM-202ENST00000421459 MED1Q15648 1581 aaPredicted RBP12.75□□□□□ -0.37
VIM-202ENST00000421459 DUOX2Q9NRD8 1548 aa12.75□□□□□ -0.37
VIM-202ENST00000421459 EIF2AK4Q9P2K8 1649 aaKnown RBP12.73□□□□□ -0.37
VIM-202ENST00000421459 RBM33Q96EV2 1170 aaKnown RBP12.73□□□□□ -0.37
VIM-202ENST00000421459 ZC3H13Q5T200 1668 aaKnown RBP12.73□□□□□ -0.37
VIM-202ENST00000421459 APLP2Q06481 763 aa12.72□□□□□ -0.37
VIM-202ENST00000421459 SCAF11Q99590 1463 aaKnown RBP12.72□□□□□ -0.37
VIM-202ENST00000421459 DAPK1P53355 1430 aa12.71□□□□□ -0.37
VIM-202ENST00000421459 UBR1Q8IWV7 1749 aa12.71□□□□□ -0.37
VIM-202ENST00000421459 CFAP65Q6ZU64 1925 aaKnown RBP12.71□□□□□ -0.37
VIM-202ENST00000421459 IDI1Q13907 227 aa12.71□□□□□ -0.37
VIM-202ENST00000421459 ARHGAP23Q9P227 1491 aa12.71□□□□□ -0.38
VIM-202ENST00000421459 ARHGAP31Q2M1Z3 1444 aa12.71□□□□□ -0.38
VIM-202ENST00000421459 ERBINQ96RT1 1412 aa12.71□□□□□ -0.38
VIM-202ENST00000421459 PTPN23Q9H3S7 1636 aa12.7□□□□□ -0.38
VIM-202ENST00000421459 PHF23Q9BUL5 403 aaPredicted RBP12.7□□□□□ -0.38
VIM-202ENST00000421459 STAG3Q9UJ98 1225 aa12.7□□□□□ -0.38
VIM-202ENST00000421459 EID1Q9Y6B2 187 aa12.7□□□□□ -0.38
VIM-202ENST00000421459 PRDM15P57071 1507 aaPredicted RBP12.69□□□□□ -0.38
VIM-202ENST00000421459 SLC26A8Q96RN1 970 aa12.69□□□□□ -0.38
VIM-202ENST00000421459 FGD6Q6ZV73 1430 aa12.69□□□□□ -0.38
VIM-202ENST00000421459 TMEM2Q9UHN6 1383 aa12.69□□□□□ -0.38
VIM-202ENST00000421459 SLIT1O75093 1534 aa12.68□□□□□ -0.38
VIM-202ENST00000421459 PIK3C2BO00750 1634 aa12.67□□□□□ -0.38
VIM-202ENST00000421459 KANK1Q14678 1352 aa12.67□□□□□ -0.38
VIM-202ENST00000421459 CROCC2H7BZ55 1655 aa12.67□□□□□ -0.38
VIM-202ENST00000421459 FAM50AQ14320 339 aaKnown RBP12.66□□□□□ -0.38
VIM-202ENST00000421459 RGS17Q9UGC6 210 aaPredicted RBP12.66□□□□□ -0.38
VIM-202ENST00000421459 ANKRD30AQ9BXX3 1397 aa12.66□□□□□ -0.38
VIM-202ENST00000421459 PROSER2Q86WR7 435 aaPredicted RBP12.64□□□□□ -0.39
VIM-202ENST00000421459 TMEM94Q12767 1356 aa12.64□□□□□ -0.39
VIM-202ENST00000421459 SYNMO15061 1565 aa12.64□□□□□ -0.39
VIM-202ENST00000421459 KCNA6P17658 529 aa12.63□□□□□ -0.39
VIM-202ENST00000421459 BCANQ96GW7 911 aa12.63□□□□□ -0.39
VIM-202ENST00000421459 EFCAB6Q5THR3 1501 aa12.62□□□□□ -0.39
VIM-202ENST00000421459 LMTK2Q8IWU2 1503 aa12.62□□□□□ -0.39
VIM-202ENST00000421459 NOS1P29475 1434 aa12.62□□□□□ -0.39
VIM-202ENST00000421459 XIRP1Q702N8 1843 aaKnown RBP12.61□□□□□ -0.39
VIM-202ENST00000421459 TET3O43151 1660 aa12.61□□□□□ -0.39
VIM-202ENST00000421459 NUTM2DQ5VT03 806 aaPredicted RBP12.6□□□□□ -0.39
VIM-202ENST00000421459 SLC52A1Q9NWF4 448 aa12.59□□□□□ -0.39
VIM-202ENST00000421459 CHGAP10645 457 aaKnown RBP12.58□□□□□ -0.4
VIM-202ENST00000421459 FAM135BQ49AJ0 1406 aa12.58□□□□□ -0.4
VIM-202ENST00000421459 ADGRL2O95490 1459 aa12.58□□□□□ -0.4
VIM-202ENST00000421459 ANKRD50Q9ULJ7 1429 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms