RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 NISCHQ9Y2I1 1504 aa20.43■□□□□ 0.86
VIM-202ENST00000421459 ABCC9O60706 1549 aa18.54■□□□□ 0.56
VIM-202ENST00000421459 CCDC180Q9P1Z9 1646 aa18.24■□□□□ 0.51
VIM-202ENST00000421459 DNAJC5BQ9UF47 199 aa17.58■□□□□ 0.4
VIM-202ENST00000421459 RB1CC1Q8TDY2 1594 aa17.47■□□□□ 0.39
VIM-202ENST00000421459 DCAF8L2P0C7V8 631 aa17.45■□□□□ 0.38
VIM-202ENST00000421459 PABPN1Q86U42 306 aaKnown RBP eCLIP17.33■□□□□ 0.36
VIM-202ENST00000421459 NACADO15069 1562 aa17.32■□□□□ 0.36
VIM-202ENST00000421459 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
VIM-202ENST00000421459 BICRAQ9NZM4 1560 aa17.03■□□□□ 0.32
VIM-202ENST00000421459 MYO15BQ96JP2 1530 aa17.01■□□□□ 0.31
VIM-202ENST00000421459 ZCCHC6Q5VYS8 1495 aaKnown RBP16.89■□□□□ 0.29
VIM-202ENST00000421459 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
VIM-202ENST00000421459 SCRIBQ14160 1630 aa16.77■□□□□ 0.27
VIM-202ENST00000421459 CC2D2AQ9P2K1 1620 aa16.67■□□□□ 0.26
VIM-202ENST00000421459 CECR2Q9BXF3 1484 aa16.67■□□□□ 0.26
VIM-202ENST00000421459 SHROOM4Q9ULL8 1493 aa16.64■□□□□ 0.25
VIM-202ENST00000421459 EIF4G1Q04637 1599 aaKnown RBP16.6■□□□□ 0.25
VIM-202ENST00000421459 DNAJC5Q9H3Z4 198 aa16.11■□□□□ 0.17
VIM-202ENST00000421459 NCAPD3P42695 1498 aa16.04■□□□□ 0.16
VIM-202ENST00000421459 ATAD2BQ9ULI0 1458 aa16.02■□□□□ 0.15
VIM-202ENST00000421459 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
VIM-202ENST00000421459 SMARCA4P51532 1647 aa15.93■□□□□ 0.14
VIM-202ENST00000421459 NESP48681 1621 aa15.92■□□□□ 0.14
VIM-202ENST00000421459 CUX2O14529 1486 aa15.91■□□□□ 0.14
VIM-202ENST00000421459 SMARCA2P51531 1590 aa15.88■□□□□ 0.13
VIM-202ENST00000421459 HMGXB3Q12766 1538 aa15.86■□□□□ 0.13
VIM-202ENST00000421459 BAZ1BQ9UIG0 1483 aaKnown RBP15.84■□□□□ 0.13
VIM-202ENST00000421459 BAZ1AQ9NRL2 1556 aaPredicted RBP15.82■□□□□ 0.12
VIM-202ENST00000421459 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
VIM-202ENST00000421459 PEG3Q9GZU2 1588 aa15.73■□□□□ 0.11
VIM-202ENST00000421459 THOC2Q8NI27 1593 aaKnown RBP15.66■□□□□ 0.1
VIM-202ENST00000421459 LAMC3Q9Y6N6 1575 aa15.65■□□□□ 0.1
VIM-202ENST00000421459 PDS5BQ9NTI5 1447 aa15.6■□□□□ 0.09
VIM-202ENST00000421459 KIF21AQ7Z4S6 1674 aa15.6■□□□□ 0.09
VIM-202ENST00000421459 CADPSQ9ULU8 1353 aa15.59■□□□□ 0.09
VIM-202ENST00000421459 WIZO95785 1651 aa15.57■□□□□ 0.08
VIM-202ENST00000421459 MRC2Q9UBG0 1479 aa15.48■□□□□ 0.07
VIM-202ENST00000421459 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
VIM-202ENST00000421459 WDR62O43379 1518 aa15.43■□□□□ 0.06
VIM-202ENST00000421459 RSF1Q96T23 1441 aaPredicted RBP15.43■□□□□ 0.06
VIM-202ENST00000421459 FANCD2Q9BXW9 1451 aa15.4■□□□□ 0.06
VIM-202ENST00000421459 CEP164Q9UPV0 1460 aa15.4■□□□□ 0.06
VIM-202ENST00000421459 CFTRP13569 1480 aa15.36■□□□□ 0.05
VIM-202ENST00000421459 TOP2AP11388 1531 aaKnown RBP15.32■□□□□ 0.04
VIM-202ENST00000421459 URB2Q14146 1524 aaKnown RBP15.31■□□□□ 0.04
VIM-202ENST00000421459 OSCARQ8IYS5 282 aa15.25■□□□□ 0.03
VIM-202ENST00000421459 CCDC88BA6NC98 1476 aa15.22■□□□□ 0.03
VIM-202ENST00000421459 ZNF608Q9ULD9 1512 aaPredicted RBP15.17■□□□□ 0.02
VIM-202ENST00000421459 TOPBP1Q92547 1522 aa15.1■□□□□ 0.01
VIM-202ENST00000421459 IFT140Q96RY7 1462 aa15.09■□□□□ 0.01
VIM-202ENST00000421459 PRDM2Q13029 1718 aa15.05■□□□□ -0
VIM-202ENST00000421459 AQRO60306 1485 aaKnown RBP eCLIP15.02■□□□□ -02e-8■■■■■ 33.5
VIM-202ENST00000421459 RIMBP3CA6NJZ7 1639 aa15.02□□□□□ -0.01
VIM-202ENST00000421459 RIMBP3BA6NNM3 1639 aa15.02□□□□□ -0.01
VIM-202ENST00000421459 RIMBP3Q9UFD9 1639 aa15.02□□□□□ -0.01
VIM-202ENST00000421459 EIF4G3O43432 1585 aaKnown RBP14.98□□□□□ -0.01
VIM-202ENST00000421459 DNMBPQ6XZF7 1577 aa14.98□□□□□ -0.01
VIM-202ENST00000421459 FBLN2P98095 1184 aa14.98□□□□□ -0.01
VIM-202ENST00000421459 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
VIM-202ENST00000421459 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
VIM-202ENST00000421459 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
VIM-202ENST00000421459 RAD54L2Q9Y4B4 1467 aa14.95□□□□□ -0.02
VIM-202ENST00000421459 TARBP1Q13395 1621 aaKnown RBP14.95□□□□□ -0.02
VIM-202ENST00000421459 POLA1P09884 1462 aaPredicted RBP14.95□□□□□ -0.02
VIM-202ENST00000421459 TDRD9Q8NDG6 1382 aaKnown RBP14.93□□□□□ -0.02
VIM-202ENST00000421459 SOGA1O94964 1423 aa14.9□□□□□ -0.02
VIM-202ENST00000421459 CHD1O14646 1710 aa14.87□□□□□ -0.03
VIM-202ENST00000421459 FGD5Q6ZNL6 1462 aa14.84□□□□□ -0.03
VIM-202ENST00000421459 ARAP1Q96P48 1450 aa14.84□□□□□ -0.03
VIM-202ENST00000421459 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
VIM-202ENST00000421459 CUX1P39880 1505 aa14.82□□□□□ -0.04
VIM-202ENST00000421459 TRHP20396 242 aaPredicted RBP14.82□□□□□ -0.04
VIM-202ENST00000421459 CHMP7Q8WUX9 453 aaPredicted RBP14.8□□□□□ -0.04
VIM-202ENST00000421459 SUPT5HO00267 1087 aaKnown RBP14.78□□□□□ -0.04
VIM-202ENST00000421459 CLASP1Q7Z460 1538 aa14.73□□□□□ -0.05
VIM-202ENST00000421459 GRIN2BQ13224 1484 aa14.73□□□□□ -0.05
VIM-202ENST00000421459 MAGI1Q96QZ7 1491 aaPredicted RBP14.7□□□□□ -0.06
VIM-202ENST00000421459 SYNJ2O15056 1496 aa14.69□□□□□ -0.06
VIM-202ENST00000421459 GAPVD1Q14C86 1478 aa14.69□□□□□ -0.06
VIM-202ENST00000421459 WDR97A6NE52 1622 aa14.67□□□□□ -0.06
VIM-202ENST00000421459 SYNJ1O43426 1573 aa14.67□□□□□ -0.06
VIM-202ENST00000421459 ABCA10Q8WWZ4 1543 aa14.63□□□□□ -0.07
VIM-202ENST00000421459 PBRM1Q86U86 1689 aa14.61□□□□□ -0.07
VIM-202ENST00000421459 ABCA5Q8WWZ7 1642 aa14.59□□□□□ -0.07
VIM-202ENST00000421459 ERCC6L2Q5T890 1561 aa14.58□□□□□ -0.08
VIM-202ENST00000421459 WRNQ14191 1432 aaPredicted RBP eCLIP14.58□□□□□ -0.08
VIM-202ENST00000421459 GRIN2AQ12879 1464 aa14.55□□□□□ -0.08
VIM-202ENST00000421459 CEP170Q5SW79 1584 aa14.51□□□□□ -0.09
VIM-202ENST00000421459 NUP160Q12769 1436 aa14.5□□□□□ -0.09
VIM-202ENST00000421459 ADAMTS12P58397 1594 aa14.5□□□□□ -0.09
VIM-202ENST00000421459 TOP2BQ02880 1626 aa14.49□□□□□ -0.09
VIM-202ENST00000421459 FHAD1B1AJZ9 1412 aa14.49□□□□□ -0.09
VIM-202ENST00000421459 BIVM-ERCC5R4GMW8 1640 aa14.48□□□□□ -0.09
VIM-202ENST00000421459 AEBP2Q6ZN18 517 aaPredicted RBP14.42□□□□□ -0.1
VIM-202ENST00000421459 JPH4Q96JJ6 628 aa14.42□□□□□ -0.1
VIM-202ENST00000421459 PRG4Q92954 1404 aaPredicted RBP14.41□□□□□ -0.1
VIM-202ENST00000421459 ERICH3Q5RHP9 1530 aa14.41□□□□□ -0.1
VIM-202ENST00000421459 SHROOM2Q13796 1616 aa14.4□□□□□ -0.1
VIM-202ENST00000421459 IGF1RP08069 1367 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms