RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 TNRQ92752 1358 aa27.09■■□□□ 1.93
CHMP3-203ENST00000409225 CPS1P31327 1500 aa27.09■■□□□ 1.93
CHMP3-203ENST00000409225 NEURL4Q96JN8 1562 aa27.09■■□□□ 1.93
CHMP3-203ENST00000409225 MBD5Q9P267 1494 aa27.08■■□□□ 1.93
CHMP3-203ENST00000409225 TIAM1Q13009 1591 aa27.08■■□□□ 1.93
CHMP3-203ENST00000409225 DHX29Q7Z478 1369 aaKnown RBP27.08■■□□□ 1.93
CHMP3-203ENST00000409225 SHANK2Q9UPX8 1470 aa27.07■■□□□ 1.92
CHMP3-203ENST00000409225 RTEL1-TNFRSF6BF6WH68 1400 aa27.06■■□□□ 1.92
CHMP3-203ENST00000409225 KIF3BO15066 747 aa27.04■■□□□ 1.92
CHMP3-203ENST00000409225 PZPP20742 1482 aa27.02■■□□□ 1.92
CHMP3-203ENST00000409225 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.02■■□□□ 1.92
CHMP3-203ENST00000409225 KDM5DQ9BY66 1539 aa27.01■■□□□ 1.91
CHMP3-203ENST00000409225 ANKLE2Q86XL3 938 aa27.01■■□□□ 1.91
CHMP3-203ENST00000409225 EHBP1L1Q8N3D4 1523 aa26.99■■□□□ 1.91
CHMP3-203ENST00000409225 WASHC2CQ9Y4E1 1318 aa26.98■■□□□ 1.91
CHMP3-203ENST00000409225 VWDEQ8N2E2 1590 aa26.98■■□□□ 1.91
CHMP3-203ENST00000409225 THEMISQ8N1K5 641 aaPredicted RBP26.96■■□□□ 1.91
CHMP3-203ENST00000409225 PHF23Q9BUL5 403 aaPredicted RBP26.96■■□□□ 1.91
CHMP3-203ENST00000409225 NPHP4O75161 1426 aaPredicted RBP26.95■■□□□ 1.9
CHMP3-203ENST00000409225 MIA2Q96PC5 1412 aa26.95■■□□□ 1.9
CHMP3-203ENST00000409225 FAM135AQ9P2D6 1515 aa26.95■■□□□ 1.9
CHMP3-203ENST00000409225 CCDC141Q6ZP82 1450 aa26.94■■□□□ 1.9
CHMP3-203ENST00000409225 CEP162Q5TB80 1403 aa26.94■■□□□ 1.9
CHMP3-203ENST00000409225 UGGT1Q9NYU2 1555 aa26.93■■□□□ 1.9
CHMP3-203ENST00000409225 NLRP1Q9C000 1473 aa26.93■■□□□ 1.9
CHMP3-203ENST00000409225 ALKQ9UM73 1620 aa26.92■■□□□ 1.9
CHMP3-203ENST00000409225 SENP3Q9H4L4 574 aaPredicted RBP26.92■■□□□ 1.9
CHMP3-203ENST00000409225 MED14O60244 1454 aa26.9■■□□□ 1.9
CHMP3-203ENST00000409225 CAMSAP2Q08AD1 1489 aa26.9■■□□□ 1.9
CHMP3-203ENST00000409225 DEPDC5O75140 1603 aa26.89■■□□□ 1.9
CHMP3-203ENST00000409225 IQGAP1P46940 1657 aa26.86■■□□□ 1.89
CHMP3-203ENST00000409225 RSPH4AQ5TD94 716 aa26.84■■□□□ 1.89
CHMP3-203ENST00000409225 NCOA2Q15596 1464 aa26.84■■□□□ 1.89
CHMP3-203ENST00000409225 STRCP1A6NGW2 1772 aa26.82■■□□□ 1.88
CHMP3-203ENST00000409225 LRRC7Q96NW7 1537 aa26.82■■□□□ 1.88
CHMP3-203ENST00000409225 TSPY4P0CV99 314 aa26.79■■□□□ 1.88
CHMP3-203ENST00000409225 TSPY10P0CW01 314 aa26.79■■□□□ 1.88
CHMP3-203ENST00000409225 RNF17Q9BXT8 1623 aaKnown RBP26.78■■□□□ 1.88
CHMP3-203ENST00000409225 ARHGEF5Q12774 1597 aa26.77■■□□□ 1.88
CHMP3-203ENST00000409225 ABCC3O15438 1527 aa26.77■■□□□ 1.88
CHMP3-203ENST00000409225 SYNMO15061 1565 aa26.76■■□□□ 1.87
CHMP3-203ENST00000409225 ERVK-7P63135 1459 aa26.74■■□□□ 1.87
CHMP3-203ENST00000409225 ZC3H13Q5T200 1668 aaKnown RBP26.73■■□□□ 1.87
CHMP3-203ENST00000409225 UBR1Q8IWV7 1749 aa26.67■■□□□ 1.86
CHMP3-203ENST00000409225 SCAF11Q99590 1463 aaKnown RBP26.67■■□□□ 1.86
CHMP3-203ENST00000409225 RGS17Q9UGC6 210 aaPredicted RBP26.65■■□□□ 1.86
CHMP3-203ENST00000409225 MAST1Q9Y2H9 1570 aa26.65■■□□□ 1.86
CHMP3-203ENST00000409225 CFAP65Q6ZU64 1925 aaKnown RBP26.65■■□□□ 1.86
CHMP3-203ENST00000409225 CEP152O94986 1710 aa26.65■■□□□ 1.86
CHMP3-203ENST00000409225 MROH1Q8NDA8 1641 aa26.65■■□□□ 1.86
CHMP3-203ENST00000409225 EIF2AK4Q9P2K8 1649 aaKnown RBP26.65■■□□□ 1.86
CHMP3-203ENST00000409225 LTKP29376 864 aa26.63■■□□□ 1.85
CHMP3-203ENST00000409225 TXNDC2Q86VQ3 553 aa26.62■■□□□ 1.85
CHMP3-203ENST00000409225 ARHGAP23Q9P227 1491 aa26.59■■□□□ 1.85
CHMP3-203ENST00000409225 XIRP1Q702N8 1843 aaKnown RBP26.58■■□□□ 1.85
CHMP3-203ENST00000409225 SLIT1O75093 1534 aa26.58■■□□□ 1.85
CHMP3-203ENST00000409225 LRRC9Q6ZRR7 1453 aa26.56■■□□□ 1.84
CHMP3-203ENST00000409225 EID1Q9Y6B2 187 aa26.56■■□□□ 1.84
CHMP3-203ENST00000409225 DUOX2Q9NRD8 1548 aa26.54■■□□□ 1.84
CHMP3-203ENST00000409225 FAM135BQ49AJ0 1406 aa26.51■■□□□ 1.83
CHMP3-203ENST00000409225 ARHGAP31Q2M1Z3 1444 aa26.5■■□□□ 1.83
CHMP3-203ENST00000409225 POTEAQ6S8J7 498 aa26.49■■□□□ 1.83
CHMP3-203ENST00000409225 PIK3C2BO00750 1634 aa26.49■■□□□ 1.83
CHMP3-203ENST00000409225 PRDM15P57071 1507 aaPredicted RBP26.49■■□□□ 1.83
CHMP3-203ENST00000409225 TMEM94Q12767 1356 aa26.48■■□□□ 1.83
CHMP3-203ENST00000409225 STAG3Q9UJ98 1225 aa26.48■■□□□ 1.83
CHMP3-203ENST00000409225 MYOM3Q5VTT5 1437 aa26.48■■□□□ 1.83
CHMP3-203ENST00000409225 TMEM2Q9UHN6 1383 aa26.47■■□□□ 1.83
CHMP3-203ENST00000409225 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.47■■□□□ 1.838e-8■■■□□ 17.3
CHMP3-203ENST00000409225 KIF15Q9NS87 1388 aa26.46■■□□□ 1.83
CHMP3-203ENST00000409225 KANK4Q5T7N3 995 aaPredicted RBP26.46■■□□□ 1.83
CHMP3-203ENST00000409225 RRP7BPQ9NSQ0 103 aa26.44■■□□□ 1.82
CHMP3-203ENST00000409225 VPS8Q8N3P4 1428 aa26.44■■□□□ 1.82
CHMP3-203ENST00000409225 ERBINQ96RT1 1412 aa26.43■■□□□ 1.82
CHMP3-203ENST00000409225 RBM33Q96EV2 1170 aaKnown RBP26.43■■□□□ 1.82
CHMP3-203ENST00000409225 ROBO1Q9Y6N7 1651 aa26.43■■□□□ 1.82
CHMP3-203ENST00000409225 KCNA6P17658 529 aa26.42■■□□□ 1.82
CHMP3-203ENST00000409225 PROSER2Q86WR7 435 aaPredicted RBP26.42■■□□□ 1.82
CHMP3-203ENST00000409225 SLC26A8Q96RN1 970 aa26.41■■□□□ 1.82
CHMP3-203ENST00000409225 MAP3K1Q13233 1512 aa26.4■■□□□ 1.82
CHMP3-203ENST00000409225 EFCAB6Q5THR3 1501 aa26.4■■□□□ 1.82
CHMP3-203ENST00000409225 KANK1Q14678 1352 aa26.38■■□□□ 1.81
CHMP3-203ENST00000409225 IDI1Q13907 227 aa26.38■■□□□ 1.81
CHMP3-203ENST00000409225 ABCC5O15440 1437 aa26.37■■□□□ 1.81
CHMP3-203ENST00000409225 CROCC2H7BZ55 1655 aa26.36■■□□□ 1.81
CHMP3-203ENST00000409225 TET3O43151 1660 aa26.34■■□□□ 1.81
CHMP3-203ENST00000409225 KDM5AP29375 1690 aaKnown RBP26.34■■□□□ 1.81
CHMP3-203ENST00000409225 BCANQ96GW7 911 aa26.32■■□□□ 1.8
CHMP3-203ENST00000409225 SETD1AO15047 1707 aaKnown RBP26.31■■□□□ 1.8
CHMP3-203ENST00000409225 MSH6P52701 1360 aa26.31■■□□□ 1.8
CHMP3-203ENST00000409225 NKTRP30414 1462 aaKnown RBP26.3■■□□□ 1.8
CHMP3-203ENST00000409225 LMTK2Q8IWU2 1503 aa26.29■■□□□ 1.8
CHMP3-203ENST00000409225 NWD1Q149M9 1564 aa26.29■■□□□ 1.8
CHMP3-203ENST00000409225 PTPN23Q9H3S7 1636 aa26.29■■□□□ 1.8
CHMP3-203ENST00000409225 DAPK1P53355 1430 aa26.29■■□□□ 1.8
CHMP3-203ENST00000409225 ADGRB3O60242 1522 aa26.29■■□□□ 1.8
CHMP3-203ENST00000409225 PHLPP1O60346 1717 aa26.28■■□□□ 1.8
CHMP3-203ENST00000409225 SLAIN2Q9P270 581 aa26.27■■□□□ 1.8
CHMP3-203ENST00000409225 JCADQ9P266 1359 aa26.26■■□□□ 1.79
CHMP3-203ENST00000409225 CHIC2Q9UKJ5 165 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms