RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 ABCC5O15440 1437 aa30.12■■■□□ 2.41
SMARCB1-204ENST00000407422 CAMSAP1Q5T5Y3 1602 aa30.11■■■□□ 2.41
SMARCB1-204ENST00000407422 NCOA1Q15788 1441 aa30.11■■■□□ 2.41
SMARCB1-204ENST00000407422 CROCC2H7BZ55 1655 aa30.11■■■□□ 2.41
SMARCB1-204ENST00000407422 ZNF142P52746 1687 aaPredicted RBP30.11■■■□□ 2.41
SMARCB1-204ENST00000407422 FAM135AQ9P2D6 1515 aa30.1■■■□□ 2.41
SMARCB1-204ENST00000407422 RNF17Q9BXT8 1623 aaKnown RBP30.09■■■□□ 2.41
SMARCB1-204ENST00000407422 FBXO31Q5XUX0 539 aaPredicted RBP30.09■■■□□ 2.41
SMARCB1-204ENST00000407422 CEP170BQ9Y4F5 1589 aaPredicted RBP30.09■■■□□ 2.41
SMARCB1-204ENST00000407422 TCOF1Q13428 1488 aaKnown RBP30.08■■■□□ 2.41
SMARCB1-204ENST00000407422 EIF2AK4Q9P2K8 1649 aaKnown RBP30.07■■■□□ 2.4
SMARCB1-204ENST00000407422 PZPP20742 1482 aa30.06■■■□□ 2.4
SMARCB1-204ENST00000407422 SHANK2Q9UPX8 1470 aa30.06■■■□□ 2.4
SMARCB1-204ENST00000407422 DNMT1P26358 1616 aaKnown RBP30.05■■■□□ 2.4
SMARCB1-204ENST00000407422 PTPRTO14522 1441 aa30.05■■■□□ 2.4
SMARCB1-204ENST00000407422 DAPK1P53355 1430 aa30.05■■■□□ 2.4
SMARCB1-204ENST00000407422 DUOX2Q9NRD8 1548 aa30.04■■■□□ 2.4
SMARCB1-204ENST00000407422 CERKQ8TCT0 537 aa30.04■■■□□ 2.4
SMARCB1-204ENST00000407422 KIF15Q9NS87 1388 aa30.03■■■□□ 2.4
SMARCB1-204ENST00000407422 RRP7BPQ9NSQ0 103 aa30.02■■■□□ 2.4
SMARCB1-204ENST00000407422 MROH1Q8NDA8 1641 aa30.02■■■□□ 2.4
SMARCB1-204ENST00000407422 ABCC3O15438 1527 aa30.01■■■□□ 2.39
SMARCB1-204ENST00000407422 TNRQ92752 1358 aa30■■■□□ 2.39
SMARCB1-204ENST00000407422 NCKAP5LQ9HCH0 1330 aa30■■■□□ 2.39
SMARCB1-204ENST00000407422 A2ML1A8K2U0 1454 aa29.99■■■□□ 2.39
SMARCB1-204ENST00000407422 ZC3H13Q5T200 1668 aaKnown RBP29.98■■■□□ 2.39
SMARCB1-204ENST00000407422 CHIC2Q9UKJ5 165 aa29.96■■■□□ 2.39
SMARCB1-204ENST00000407422 PLA2R1Q13018 1463 aa29.96■■■□□ 2.39
SMARCB1-204ENST00000407422 CEP152O94986 1710 aa29.95■■■□□ 2.39
SMARCB1-204ENST00000407422 ERBINQ96RT1 1412 aa29.93■■■□□ 2.38
SMARCB1-204ENST00000407422 CFAP65Q6ZU64 1925 aaKnown RBP29.91■■■□□ 2.38
SMARCB1-204ENST00000407422 FAM50AQ14320 339 aaKnown RBP29.91■■■□□ 2.38
SMARCB1-204ENST00000407422 PKD2Q13563 968 aa29.9■■■□□ 2.38
SMARCB1-204ENST00000407422 ANKRD30AQ9BXX3 1397 aa29.9■■■□□ 2.38
SMARCB1-204ENST00000407422 PRDM15P57071 1507 aaPredicted RBP29.89■■■□□ 2.37
SMARCB1-204ENST00000407422 LTBP4Q8N2S1 1624 aa29.88■■■□□ 2.37
SMARCB1-204ENST00000407422 SPATA31D1Q6ZQQ2 1576 aa29.87■■■□□ 2.37
SMARCB1-204ENST00000407422 DEPDC5O75140 1603 aa29.86■■■□□ 2.37
SMARCB1-204ENST00000407422 NLRP1Q9C000 1473 aa29.86■■■□□ 2.37
SMARCB1-204ENST00000407422 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.85■■■□□ 2.372e-8■□□□□ 11.2
SMARCB1-204ENST00000407422 ERVK-7P63135 1459 aa29.84■■■□□ 2.37
SMARCB1-204ENST00000407422 ADGRL2O95490 1459 aa29.81■■■□□ 2.36
SMARCB1-204ENST00000407422 UGGT1Q9NYU2 1555 aa29.81■■■□□ 2.36
SMARCB1-204ENST00000407422 POLR1AO95602 1720 aaPredicted RBP29.81■■■□□ 2.36
SMARCB1-204ENST00000407422 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.81■■■□□ 2.367e-16■■■■■ 28.1
SMARCB1-204ENST00000407422 PPARGC1BQ86YN6 1023 aaKnown RBP29.81■■■□□ 2.36
SMARCB1-204ENST00000407422 ZNF335Q9H4Z2 1342 aaPredicted RBP29.8■■■□□ 2.36
SMARCB1-204ENST00000407422 THEMISQ8N1K5 641 aaPredicted RBP29.78■■■□□ 2.36
SMARCB1-204ENST00000407422 NEURL4Q96JN8 1562 aa29.78■■■□□ 2.36
SMARCB1-204ENST00000407422 ARHGAP31Q2M1Z3 1444 aa29.76■■■□□ 2.35
SMARCB1-204ENST00000407422 KANK1Q14678 1352 aa29.75■■■□□ 2.35
SMARCB1-204ENST00000407422 ANKLE2Q86XL3 938 aa29.73■■■□□ 2.35
SMARCB1-204ENST00000407422 VWDEQ8N2E2 1590 aa29.73■■■□□ 2.35
SMARCB1-204ENST00000407422 ANKRD50Q9ULJ7 1429 aa29.7■■■□□ 2.34
SMARCB1-204ENST00000407422 UBR1Q8IWV7 1749 aa29.69■■■□□ 2.34
SMARCB1-204ENST00000407422 LMTK2Q8IWU2 1503 aa29.69■■■□□ 2.34
SMARCB1-204ENST00000407422 IQSEC2Q5JU85 1478 aa29.67■■■□□ 2.34
SMARCB1-204ENST00000407422 MED14O60244 1454 aa29.65■■■□□ 2.34
SMARCB1-204ENST00000407422 NPHP4O75161 1426 aaPredicted RBP29.63■■■□□ 2.33
SMARCB1-204ENST00000407422 EFCAB6Q5THR3 1501 aa29.62■■■□□ 2.33
SMARCB1-204ENST00000407422 IQGAP1P46940 1657 aa29.61■■■□□ 2.33
SMARCB1-204ENST00000407422 PIK3C2BO00750 1634 aa29.61■■■□□ 2.33
SMARCB1-204ENST00000407422 ITGAEP38570 1179 aa29.6■■■□□ 2.33
SMARCB1-204ENST00000407422 ROCK1Q13464 1354 aa29.59■■■□□ 2.33
SMARCB1-204ENST00000407422 SYNMO15061 1565 aa29.57■■■□□ 2.32
SMARCB1-204ENST00000407422 IDI1Q13907 227 aa29.55■■■□□ 2.32
SMARCB1-204ENST00000407422 NOS1P29475 1434 aa29.55■■■□□ 2.32
SMARCB1-204ENST00000407422 ARHGAP23Q9P227 1491 aa29.54■■■□□ 2.32
SMARCB1-204ENST00000407422 UNC13BO14795 1591 aa29.54■■■□□ 2.32
SMARCB1-204ENST00000407422 LTKP29376 864 aa29.54■■■□□ 2.32
SMARCB1-204ENST00000407422 SLIT1O75093 1534 aa29.54■■■□□ 2.32
SMARCB1-204ENST00000407422 SCAF11Q99590 1463 aaKnown RBP29.52■■■□□ 2.32
SMARCB1-204ENST00000407422 TET3O43151 1660 aa29.52■■■□□ 2.32
SMARCB1-204ENST00000407422 CPS1P31327 1500 aa29.51■■■□□ 2.32
SMARCB1-204ENST00000407422 TXNDC2Q86VQ3 553 aa29.51■■■□□ 2.31
SMARCB1-204ENST00000407422 STAG3Q9UJ98 1225 aa29.5■■■□□ 2.31
SMARCB1-204ENST00000407422 UBAP1LF5GYI3 381 aa29.49■■■□□ 2.31
SMARCB1-204ENST00000407422 RPRD2Q5VT52 1461 aaKnown RBP29.49■■■□□ 2.31
SMARCB1-204ENST00000407422 KDM5AP29375 1690 aaKnown RBP29.49■■■□□ 2.31
SMARCB1-204ENST00000407422 GCC2Q8IWJ2 1684 aa29.48■■■□□ 2.31
SMARCB1-204ENST00000407422 STRCP1A6NGW2 1772 aa29.48■■■□□ 2.31
SMARCB1-204ENST00000407422 TMEM2Q9UHN6 1383 aa29.47■■■□□ 2.31
SMARCB1-204ENST00000407422 EID1Q9Y6B2 187 aa29.45■■■□□ 2.3
SMARCB1-204ENST00000407422 RRBP1Q9P2E9 1410 aaKnown RBP29.44■■■□□ 2.3
SMARCB1-204ENST00000407422 SLC52A1Q9NWF4 448 aa29.43■■■□□ 2.3
SMARCB1-204ENST00000407422 IQGAP3Q86VI3 1631 aa29.43■■■□□ 2.3
SMARCB1-204ENST00000407422 ADGRB3O60242 1522 aa29.42■■■□□ 2.3
SMARCB1-204ENST00000407422 E9PCH4 1651 aa29.42■■■□□ 2.3
SMARCB1-204ENST00000407422 NUP155O75694 1391 aa29.39■■■□□ 2.3
SMARCB1-204ENST00000407422 MYO5BQ9ULV0 1848 aa29.39■■■□□ 2.3
SMARCB1-204ENST00000407422 LRRC7Q96NW7 1537 aa29.35■■■□□ 2.29
SMARCB1-204ENST00000407422 TMEM131LA2VDJ0 1609 aa29.32■■■□□ 2.28
SMARCB1-204ENST00000407422 TOM1O60784 492 aa29.31■■■□□ 2.28
SMARCB1-204ENST00000407422 PIP4K2BP78356 416 aa29.31■■■□□ 2.28
SMARCB1-204ENST00000407422 SCAF1Q9H7N4 1312 aaKnown RBP29.29■■■□□ 2.28
SMARCB1-204ENST00000407422 SLC26A8Q96RN1 970 aa29.28■■■□□ 2.28
SMARCB1-204ENST00000407422 ALKQ9UM73 1620 aa29.28■■■□□ 2.28
SMARCB1-204ENST00000407422 ZFYVE9O95405 1425 aa29.27■■■□□ 2.28
SMARCB1-204ENST00000407422 NAIPQ13075 1403 aa29.27■■■□□ 2.28
SMARCB1-204ENST00000407422 SENP3Q9H4L4 574 aaPredicted RBP29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms