RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 NISCHQ9Y2I1 1504 aa47.8■■■■■ 5.24
SMARCB1-204ENST00000407422 CCDC180Q9P1Z9 1646 aa42.7■■■■■ 4.43
SMARCB1-204ENST00000407422 ABCC9O60706 1549 aa42.37■■■■■ 4.37
SMARCB1-204ENST00000407422 RB1CC1Q8TDY2 1594 aa40.45■■■■■ 4.07
SMARCB1-204ENST00000407422 NACADO15069 1562 aa40.27■■■■■ 4.04
SMARCB1-204ENST00000407422 DCAF8L2P0C7V8 631 aa40.22■■■■■ 4.03
SMARCB1-204ENST00000407422 MYO15BQ96JP2 1530 aa39.82■■■■□ 3.96
SMARCB1-204ENST00000407422 ZCCHC6Q5VYS8 1495 aaKnown RBP39.7■■■■□ 3.95
SMARCB1-204ENST00000407422 UNC13AQ9UPW8 1703 aa39.63■■■■□ 3.94
SMARCB1-204ENST00000407422 PABPN1Q86U42 306 aaKnown RBP eCLIP39.54■■■■□ 3.92
SMARCB1-204ENST00000407422 DCAF1Q9Y4B6 1507 aa39.46■■■■□ 3.91
SMARCB1-204ENST00000407422 DNAJC5BQ9UF47 199 aa39.43■■■■□ 3.9
SMARCB1-204ENST00000407422 BICRAQ9NZM4 1560 aa39.31■■■■□ 3.88
SMARCB1-204ENST00000407422 SCRIBQ14160 1630 aa38.99■■■■□ 3.83
SMARCB1-204ENST00000407422 SHROOM4Q9ULL8 1493 aa38.72■■■■□ 3.79
SMARCB1-204ENST00000407422 CC2D2AQ9P2K1 1620 aa38.3■■■■□ 3.72
SMARCB1-204ENST00000407422 EIF4G1Q04637 1599 aaKnown RBP38.29■■■■□ 3.72
SMARCB1-204ENST00000407422 CECR2Q9BXF3 1484 aa38.1■■■■□ 3.69
SMARCB1-204ENST00000407422 SMARCA4P51532 1647 aa37.21■■■■□ 3.55
SMARCB1-204ENST00000407422 NCAPD3P42695 1498 aa37.18■■■■□ 3.54
SMARCB1-204ENST00000407422 ATAD2BQ9ULI0 1458 aa37.14■■■■□ 3.54
SMARCB1-204ENST00000407422 BAZ1AQ9NRL2 1556 aaPredicted RBP37.06■■■■□ 3.52
SMARCB1-204ENST00000407422 SMARCA2P51531 1590 aa37.03■■■■□ 3.52
SMARCB1-204ENST00000407422 HMGXB3Q12766 1538 aa36.93■■■■□ 3.5
SMARCB1-204ENST00000407422 MROH2BQ7Z745 1585 aa36.87■■■■□ 3.49
SMARCB1-204ENST00000407422 PEG3Q9GZU2 1588 aa36.83■■■■□ 3.49
SMARCB1-204ENST00000407422 BAZ1BQ9UIG0 1483 aaKnown RBP36.8■■■■□ 3.48
SMARCB1-204ENST00000407422 NESP48681 1621 aa36.54■■■■□ 3.44
SMARCB1-204ENST00000407422 ERCC6Q03468 1493 aa36.52■■■■□ 3.44
SMARCB1-204ENST00000407422 WIZO95785 1651 aa36.46■■■■□ 3.43
SMARCB1-204ENST00000407422 CUX2O14529 1486 aa36.29■■■■□ 3.4
SMARCB1-204ENST00000407422 LAMC3Q9Y6N6 1575 aa36.27■■■■□ 3.4
SMARCB1-204ENST00000407422 RSF1Q96T23 1441 aaPredicted RBP36.23■■■■□ 3.39
SMARCB1-204ENST00000407422 KIF21AQ7Z4S6 1674 aa36.08■■■■□ 3.37
SMARCB1-204ENST00000407422 CADPSQ9ULU8 1353 aa36.07■■■■□ 3.37
SMARCB1-204ENST00000407422 THOC2Q8NI27 1593 aaKnown RBP36.05■■■■□ 3.36
SMARCB1-204ENST00000407422 PDS5BQ9NTI5 1447 aa36.04■■■■□ 3.36
SMARCB1-204ENST00000407422 TOP2AP11388 1531 aaKnown RBP35.97■■■■□ 3.35
SMARCB1-204ENST00000407422 DNAJC5Q9H3Z4 198 aa35.86■■■■□ 3.33
SMARCB1-204ENST00000407422 CFTRP13569 1480 aa35.75■■■■□ 3.31
SMARCB1-204ENST00000407422 MRC2Q9UBG0 1479 aa35.73■■■■□ 3.31
SMARCB1-204ENST00000407422 FANCD2Q9BXW9 1451 aa35.67■■■■□ 3.3
SMARCB1-204ENST00000407422 CEP164Q9UPV0 1460 aa35.67■■■■□ 3.3
SMARCB1-204ENST00000407422 WDR62O43379 1518 aa35.63■■■■□ 3.29
SMARCB1-204ENST00000407422 CCDC88BA6NC98 1476 aa35.59■■■■□ 3.29
SMARCB1-204ENST00000407422 PRDM2Q13029 1718 aa35.45■■■■□ 3.27
SMARCB1-204ENST00000407422 URB2Q14146 1524 aaKnown RBP35.38■■■■□ 3.25
SMARCB1-204ENST00000407422 TOPBP1Q92547 1522 aa35.05■■■■□ 3.2
SMARCB1-204ENST00000407422 SUPT5HO00267 1087 aaKnown RBP34.95■■■■□ 3.19
SMARCB1-204ENST00000407422 ABCC8Q09428 1581 aa34.95■■■■□ 3.18
SMARCB1-204ENST00000407422 DNMBPQ6XZF7 1577 aa34.95■■■■□ 3.18
SMARCB1-204ENST00000407422 IFT140Q96RY7 1462 aa34.93■■■■□ 3.18
SMARCB1-204ENST00000407422 ZNF608Q9ULD9 1512 aaPredicted RBP34.89■■■■□ 3.18
SMARCB1-204ENST00000407422 TARBP1Q13395 1621 aaKnown RBP34.73■■■■□ 3.15
SMARCB1-204ENST00000407422 OSCARQ8IYS5 282 aa34.73■■■■□ 3.15
SMARCB1-204ENST00000407422 POLA1P09884 1462 aaPredicted RBP34.73■■■■□ 3.15
SMARCB1-204ENST00000407422 EIF4G3O43432 1585 aaKnown RBP34.7■■■■□ 3.15
SMARCB1-204ENST00000407422 AQRO60306 1485 aaKnown RBP eCLIP34.62■■■■□ 3.13
SMARCB1-204ENST00000407422 RAD54L2Q9Y4B4 1467 aa34.62■■■■□ 3.13
SMARCB1-204ENST00000407422 CUX1P39880 1505 aa34.61■■■■□ 3.13
SMARCB1-204ENST00000407422 FGD5Q6ZNL6 1462 aa34.56■■■■□ 3.12
SMARCB1-204ENST00000407422 SOGA1O94964 1423 aa34.56■■■■□ 3.12
SMARCB1-204ENST00000407422 TRIM41Q8WV44 630 aa34.48■■■■□ 3.11
SMARCB1-204ENST00000407422 TDRD9Q8NDG6 1382 aaKnown RBP34.46■■■■□ 3.11
SMARCB1-204ENST00000407422 CHD1O14646 1710 aa34.4■■■■□ 3.1
SMARCB1-204ENST00000407422 WDR97A6NE52 1622 aa34.33■■■■□ 3.09
SMARCB1-204ENST00000407422 FBLN2P98095 1184 aa34.31■■■■□ 3.08
SMARCB1-204ENST00000407422 RIMBP3CA6NJZ7 1639 aa34.27■■■■□ 3.08
SMARCB1-204ENST00000407422 RIMBP3BA6NNM3 1639 aa34.27■■■■□ 3.08
SMARCB1-204ENST00000407422 RIMBP3Q9UFD9 1639 aa34.27■■■■□ 3.08
SMARCB1-204ENST00000407422 SNAPC4Q5SXM2 1469 aa34.26■■■■□ 3.07
SMARCB1-204ENST00000407422 GRIN2BQ13224 1484 aa34.2■■■■□ 3.07
SMARCB1-204ENST00000407422 ARHGEF11O15085 1522 aa34.18■■■■□ 3.06
SMARCB1-204ENST00000407422 ABCA10Q8WWZ4 1543 aa34.18■■■■□ 3.06
SMARCB1-204ENST00000407422 MAGI1Q96QZ7 1491 aaPredicted RBP34.16■■■■□ 3.06
SMARCB1-204ENST00000407422 WRNQ14191 1432 aaPredicted RBP eCLIP34.15■■■■□ 3.06
SMARCB1-204ENST00000407422 GAPVD1Q14C86 1478 aa34.15■■■■□ 3.06
SMARCB1-204ENST00000407422 SYNJ1O43426 1573 aa34.15■■■■□ 3.06
SMARCB1-204ENST00000407422 TOP2BQ02880 1626 aa34.14■■■■□ 3.06
SMARCB1-204ENST00000407422 BIVM-ERCC5R4GMW8 1640 aa34.14■■■■□ 3.06
SMARCB1-204ENST00000407422 PBRM1Q86U86 1689 aa34.14■■■■□ 3.06
SMARCB1-204ENST00000407422 ABCA5Q8WWZ7 1642 aa34.11■■■■□ 3.05
SMARCB1-204ENST00000407422 CHMP7Q8WUX9 453 aaPredicted RBP34.1■■■■□ 3.05
SMARCB1-204ENST00000407422 SYNJ2O15056 1496 aa34.05■■■■□ 3.04
SMARCB1-204ENST00000407422 CLASP1Q7Z460 1538 aa33.97■■■■□ 3.03
SMARCB1-204ENST00000407422 CYB5RLQ6IPT4 315 aa33.93■■■■□ 3.02
SMARCB1-204ENST00000407422 ARAP1Q96P48 1450 aa33.88■■■■□ 3.01
SMARCB1-204ENST00000407422 ADAMTS12P58397 1594 aa33.82■■■■□ 3
SMARCB1-204ENST00000407422 GRIN2AQ12879 1464 aa33.78■■■■□ 3
SMARCB1-204ENST00000407422 ERICH3Q5RHP9 1530 aa33.74■■■□□ 2.99
SMARCB1-204ENST00000407422 FHAD1B1AJZ9 1412 aa33.72■■■□□ 2.99
SMARCB1-204ENST00000407422 CEP170Q5SW79 1584 aa33.66■■■□□ 2.98
SMARCB1-204ENST00000407422 NUP160Q12769 1436 aa33.64■■■□□ 2.98
SMARCB1-204ENST00000407422 ERCC6L2Q5T890 1561 aa33.53■■■□□ 2.96
SMARCB1-204ENST00000407422 KIF27Q86VH2 1401 aa33.47■■■□□ 2.95
SMARCB1-204ENST00000407422 SHROOM2Q13796 1616 aa33.46■■■□□ 2.95
SMARCB1-204ENST00000407422 IGF1RP08069 1367 aa33.44■■■□□ 2.94
SMARCB1-204ENST00000407422 TRHP20396 242 aaPredicted RBP33.41■■■□□ 2.94
SMARCB1-204ENST00000407422 CUL7Q14999 1698 aa33.34■■■□□ 2.93
SMARCB1-204ENST00000407422 RUSC2Q8N2Y8 1516 aa33.34■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms