RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 ERICH3Q5RHP9 1530 aa24.74■■□□□ 1.55
SHANK1-203ENST00000391813 EIF3AQ14152 1382 aaKnown RBP24.73■■□□□ 1.55
SHANK1-203ENST00000391813 DRC7Q8IY82 874 aa24.73■■□□□ 1.55
SHANK1-203ENST00000391813 TOP2BQ02880 1626 aa24.72■■□□□ 1.55
SHANK1-203ENST00000391813 SNAPC4Q5SXM2 1469 aa24.72■■□□□ 1.55
SHANK1-203ENST00000391813 U2SURPO15042 1029 aaKnown RBP24.71■■□□□ 1.55
SHANK1-203ENST00000391813 RRP1P56182 461 aaKnown RBP24.71■■□□□ 1.55
SHANK1-203ENST00000391813 SAFB2Q14151 953 aaKnown RBP eCLIP24.71■■□□□ 1.55
SHANK1-203ENST00000391813 FOXD1Q16676 465 aa24.71■■□□□ 1.55
SHANK1-203ENST00000391813 L3MBTL2Q969R5 705 aa24.71■■□□□ 1.55
SHANK1-203ENST00000391813 CUX1P39880 1505 aa24.7■■□□□ 1.54
SHANK1-203ENST00000391813 UACAQ9BZF9 1416 aa24.7■■□□□ 1.54
SHANK1-203ENST00000391813 SKOR2Q2VWA4 1001 aaPredicted RBP24.69■■□□□ 1.54
SHANK1-203ENST00000391813 SYNJ1O43426 1573 aa24.68■■□□□ 1.54
SHANK1-203ENST00000391813 MFAP1P55081 439 aaKnown RBP24.68■■□□□ 1.54
SHANK1-203ENST00000391813 CASKIN1Q8WXD9 1431 aa24.67■■□□□ 1.54
SHANK1-203ENST00000391813 MORC1Q86VD1 984 aa24.67■■□□□ 1.54
SHANK1-203ENST00000391813 KCNJ4P48050 445 aa24.66■■□□□ 1.54
SHANK1-203ENST00000391813 KIF15Q9NS87 1388 aa24.65■■□□□ 1.54
SHANK1-203ENST00000391813 VGFO15240 615 aaPredicted RBP24.65■■□□□ 1.54
SHANK1-203ENST00000391813 MYBBP1AQ9BQG0 1328 aaKnown RBP24.64■■□□□ 1.54
SHANK1-203ENST00000391813 EXOC6Q8TAG9 804 aa24.64■■□□□ 1.54
SHANK1-203ENST00000391813 ARID3AQ99856 593 aa24.64■■□□□ 1.53
SHANK1-203ENST00000391813 FGD1P98174 961 aa24.63■■□□□ 1.53
SHANK1-203ENST00000391813 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
SHANK1-203ENST00000391813 CCDC144AA2RUR9 1427 aa24.62■■□□□ 1.53
SHANK1-203ENST00000391813 ABCA10Q8WWZ4 1543 aa24.61■■□□□ 1.53
SHANK1-203ENST00000391813 SLC4A3P48751 1232 aa24.61■■□□□ 1.53
SHANK1-203ENST00000391813 EFCAB5A4FU69 1503 aa24.6■■□□□ 1.53
SHANK1-203ENST00000391813 TNNT3P45378 269 aaPredicted RBP24.6■■□□□ 1.53
SHANK1-203ENST00000391813 KIF21BO75037 1637 aa24.6■■□□□ 1.53
SHANK1-203ENST00000391813 CENPJQ9HC77 1338 aaPredicted RBP24.59■■□□□ 1.53
SHANK1-203ENST00000391813 PHF14O94880 888 aa24.59■■□□□ 1.53
SHANK1-203ENST00000391813 KIAA0586Q9BVV6 1533 aa24.59■■□□□ 1.53
SHANK1-203ENST00000391813 ITPRIPQ8IWB1 547 aa24.58■■□□□ 1.53
SHANK1-203ENST00000391813 TERF2IPQ9NYB0 399 aa24.58■■□□□ 1.53
SHANK1-203ENST00000391813 PRXQ9BXM0 1461 aa24.57■■□□□ 1.52
SHANK1-203ENST00000391813 PRDM2Q13029 1718 aa24.57■■□□□ 1.52
SHANK1-203ENST00000391813 NFKBIBQ15653 356 aa24.55■■□□□ 1.52
SHANK1-203ENST00000391813 OS9Q13438 667 aaPredicted RBP24.55■■□□□ 1.52
SHANK1-203ENST00000391813 HTATSF1O43719 755 aaKnown RBP24.55■■□□□ 1.52
SHANK1-203ENST00000391813 CGNL1Q0VF96 1302 aa24.55■■□□□ 1.52
SHANK1-203ENST00000391813 AMER1Q5JTC6 1135 aaPredicted RBP24.54■■□□□ 1.52
SHANK1-203ENST00000391813 FYCO1Q9BQS8 1478 aa24.54■■□□□ 1.52
SHANK1-203ENST00000391813 STAC3Q96MF2 364 aa24.53■■□□□ 1.52
SHANK1-203ENST00000391813 PAK3O75914 559 aaPredicted RBP24.53■■□□□ 1.52
SHANK1-203ENST00000391813 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.53■■□□□ 1.52
SHANK1-203ENST00000391813 FGD6Q6ZV73 1430 aa24.52■■□□□ 1.52
SHANK1-203ENST00000391813 CSPP1Q1MSJ5 1256 aa24.52■■□□□ 1.52
SHANK1-203ENST00000391813 DDX49Q9Y6V7 483 aaKnown RBP24.52■■□□□ 1.52
SHANK1-203ENST00000391813 MAGI1Q96QZ7 1491 aaPredicted RBP24.51■■□□□ 1.51
SHANK1-203ENST00000391813 CHMP5Q9NZZ3 219 aa24.51■■□□□ 1.51
SHANK1-203ENST00000391813 KIAA1211Q6ZU35 1233 aa24.5■■□□□ 1.51
SHANK1-203ENST00000391813 CRBNQ96SW2 442 aa24.5■■□□□ 1.51
SHANK1-203ENST00000391813 SOX12O15370 315 aa24.5■■□□□ 1.51
SHANK1-203ENST00000391813 PLEKHH2Q8IVE3 1493 aa24.49■■□□□ 1.51
SHANK1-203ENST00000391813 ST18O60284 1047 aa24.49■■□□□ 1.51
SHANK1-203ENST00000391813 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.49■■□□□ 1.51
SHANK1-203ENST00000391813 NGDNQ8NEJ9 315 aaKnown RBP24.49■■□□□ 1.51
SHANK1-203ENST00000391813 AEBP2Q6ZN18 517 aaPredicted RBP24.48■■□□□ 1.51
SHANK1-203ENST00000391813 FAM43AQ8N2R8 423 aa24.47■■□□□ 1.51
SHANK1-203ENST00000391813 SMC4Q9NTJ3 1288 aa24.47■■□□□ 1.51
SHANK1-203ENST00000391813 U2AF1L5P0DN76 240 aaPredicted RBP24.47■■□□□ 1.51
SHANK1-203ENST00000391813 U2AF1Q01081 240 aaKnown RBP eCLIP24.47■■□□□ 1.51
SHANK1-203ENST00000391813 ARHGAP5Q13017 1502 aa24.46■■□□□ 1.51
SHANK1-203ENST00000391813 LRRC9Q6ZRR7 1453 aa24.46■■□□□ 1.51
SHANK1-203ENST00000391813 MAP7D2Q96T17 732 aa24.46■■□□□ 1.51
SHANK1-203ENST00000391813 ANO8Q9HCE9 1232 aaPredicted RBP24.46■■□□□ 1.51
SHANK1-203ENST00000391813 CSB-PGBD3P0DP91 1061 aa24.43■■□□□ 1.5
SHANK1-203ENST00000391813 NGEFQ8N5V2 710 aa24.43■■□□□ 1.5
SHANK1-203ENST00000391813 NUTM2DQ5VT03 806 aaPredicted RBP24.43■■□□□ 1.5
SHANK1-203ENST00000391813 NCOA2Q15596 1464 aa24.43■■□□□ 1.5
SHANK1-203ENST00000391813 PLIN1O60240 522 aa24.43■■□□□ 1.5
SHANK1-203ENST00000391813 TROQ12816 1431 aaPredicted RBP24.43■■□□□ 1.5
SHANK1-203ENST00000391813 MTERF4Q7Z6M4 381 aaKnown RBP24.42■■□□□ 1.5
SHANK1-203ENST00000391813 CLUAP1Q96AJ1 413 aa24.42■■□□□ 1.5
SHANK1-203ENST00000391813 MRE11P49959 708 aa24.42■■□□□ 1.5
SHANK1-203ENST00000391813 E9PSI1 815 aa24.41■■□□□ 1.5
SHANK1-203ENST00000391813 RTF1Q92541 710 aaKnown RBP24.41■■□□□ 1.5
SHANK1-203ENST00000391813 ZNF644Q9H582 1327 aaPredicted RBP24.41■■□□□ 1.5
SHANK1-203ENST00000391813 AFAP1Q8N556 730 aa24.4■■□□□ 1.5
SHANK1-203ENST00000391813 CHMP4AQ9BY43 222 aa24.4■■□□□ 1.5
SHANK1-203ENST00000391813 ANKRD50Q9ULJ7 1429 aa24.39■■□□□ 1.49
SHANK1-203ENST00000391813 NAP1L2Q9ULW6 460 aaPredicted RBP24.39■■□□□ 1.49
SHANK1-203ENST00000391813 TRAK1Q9UPV9 953 aa24.39■■□□□ 1.49
SHANK1-203ENST00000391813 HMMRO75330 724 aa24.38■■□□□ 1.49
SHANK1-203ENST00000391813 NPHP1O15259 732 aa24.38■■□□□ 1.49
SHANK1-203ENST00000391813 TPM4P67936 248 aa24.37■■□□□ 1.49
SHANK1-203ENST00000391813 FOXD4L1Q9NU39 408 aa24.37■■□□□ 1.49
SHANK1-203ENST00000391813 PRKCSHP14314 528 aaPredicted RBP24.37■■□□□ 1.49
SHANK1-203ENST00000391813 FAM13BQ9NYF5 915 aa24.37■■□□□ 1.49
SHANK1-203ENST00000391813 IL27Q8NEV9 243 aa24.37■■□□□ 1.49
SHANK1-203ENST00000391813 UNC13AQ9UPW8 1703 aa24.36■■□□□ 1.49
SHANK1-203ENST00000391813 APBB1O00213 710 aa24.35■■□□□ 1.49
SHANK1-203ENST00000391813 PKNOX2Q96KN3 472 aa24.34■■□□□ 1.49
SHANK1-203ENST00000391813 URB2Q14146 1524 aaKnown RBP24.34■■□□□ 1.49
SHANK1-203ENST00000391813 GRIN2AQ12879 1464 aa24.34■■□□□ 1.49
SHANK1-203ENST00000391813 ST20-MTHFSA0A0A6YYL1 179 aa24.34■■□□□ 1.49
SHANK1-203ENST00000391813 BRPF3Q9ULD4 1205 aa24.34■■□□□ 1.49
SHANK1-203ENST00000391813 CNTLNQ9NXG0 1405 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms