RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 NCOA2Q15596 1464 aa25.53■■□□□ 1.68
VCX3A-201ENST00000381089 UBAP1LF5GYI3 381 aa25.52■■□□□ 1.68
VCX3A-201ENST00000381089 KDM5DQ9BY66 1539 aa25.51■■□□□ 1.67
VCX3A-201ENST00000381089 DNMT1P26358 1616 aaKnown RBP25.5■■□□□ 1.67
VCX3A-201ENST00000381089 ILDR2Q71H61 639 aa25.5■■□□□ 1.67
VCX3A-201ENST00000381089 TNRQ92752 1358 aa25.5■■□□□ 1.67
VCX3A-201ENST00000381089 WASHC2CQ9Y4E1 1318 aa25.49■■□□□ 1.67
VCX3A-201ENST00000381089 SOCS7O14512 581 aa25.48■■□□□ 1.67
VCX3A-201ENST00000381089 TSPY4P0CV99 314 aa25.48■■□□□ 1.67
VCX3A-201ENST00000381089 TSPY10P0CW01 314 aa25.48■■□□□ 1.67
VCX3A-201ENST00000381089 PZPP20742 1482 aa25.47■■□□□ 1.67
VCX3A-201ENST00000381089 ARHGEF5Q12774 1597 aa25.44■■□□□ 1.66
VCX3A-201ENST00000381089 FBXO31Q5XUX0 539 aaPredicted RBP25.44■■□□□ 1.66
VCX3A-201ENST00000381089 POLR1AO95602 1720 aaPredicted RBP25.43■■□□□ 1.66
VCX3A-201ENST00000381089 ANKLE2Q86XL3 938 aa25.4■■□□□ 1.66
VCX3A-201ENST00000381089 THEMISQ8N1K5 641 aaPredicted RBP25.4■■□□□ 1.66
VCX3A-201ENST00000381089 NLRP1Q9C000 1473 aa25.4■■□□□ 1.66
VCX3A-201ENST00000381089 MIA2Q96PC5 1412 aa25.38■■□□□ 1.65
VCX3A-201ENST00000381089 CPS1P31327 1500 aa25.38■■□□□ 1.65
VCX3A-201ENST00000381089 NEURL4Q96JN8 1562 aa25.35■■□□□ 1.65
VCX3A-201ENST00000381089 LRRC9Q6ZRR7 1453 aa25.35■■□□□ 1.65
VCX3A-201ENST00000381089 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.35■■□□□ 1.65
VCX3A-201ENST00000381089 VPS8Q8N3P4 1428 aa25.35■■□□□ 1.65
VCX3A-201ENST00000381089 UGGT1Q9NYU2 1555 aa25.35■■□□□ 1.65
VCX3A-201ENST00000381089 TOM1O60784 492 aa25.34■■□□□ 1.65
VCX3A-201ENST00000381089 SCAF1Q9H7N4 1312 aaKnown RBP25.34■■□□□ 1.65
VCX3A-201ENST00000381089 SHANK2Q9UPX8 1470 aa25.34■■□□□ 1.65
VCX3A-201ENST00000381089 ZC3H13Q5T200 1668 aaKnown RBP25.32■■□□□ 1.64
VCX3A-201ENST00000381089 MAST1Q9Y2H9 1570 aa25.31■■□□□ 1.64
VCX3A-201ENST00000381089 RNF17Q9BXT8 1623 aaKnown RBP25.31■■□□□ 1.64
VCX3A-201ENST00000381089 DEPDC5O75140 1603 aa25.29■■□□□ 1.64
VCX3A-201ENST00000381089 EIF2AK4Q9P2K8 1649 aaKnown RBP25.29■■□□□ 1.64
VCX3A-201ENST00000381089 NPHP4O75161 1426 aaPredicted RBP25.29■■□□□ 1.64
VCX3A-201ENST00000381089 PIP4K2BP78356 416 aa25.28■■□□□ 1.64
VCX3A-201ENST00000381089 MED14O60244 1454 aa25.28■■□□□ 1.64
VCX3A-201ENST00000381089 ABCC3O15438 1527 aa25.27■■□□□ 1.64
VCX3A-201ENST00000381089 MAP3K1Q13233 1512 aa25.26■■□□□ 1.63
VCX3A-201ENST00000381089 VWDEQ8N2E2 1590 aa25.24■■□□□ 1.63
VCX3A-201ENST00000381089 MYOM3Q5VTT5 1437 aa25.24■■□□□ 1.63
VCX3A-201ENST00000381089 IQGAP1P46940 1657 aa25.23■■□□□ 1.63
VCX3A-201ENST00000381089 HSPA1LP34931 641 aa25.22■■□□□ 1.63
VCX3A-201ENST00000381089 ERVK-7P63135 1459 aa25.21■■□□□ 1.63
VCX3A-201ENST00000381089 DUOX2Q9NRD8 1548 aa25.21■■□□□ 1.63
VCX3A-201ENST00000381089 KANK4Q5T7N3 995 aaPredicted RBP25.2■■□□□ 1.62
VCX3A-201ENST00000381089 LOC105371045A0A1W2PR82 267 aa25.17■■□□□ 1.62
VCX3A-201ENST00000381089 CEP152O94986 1710 aa25.16■■□□□ 1.62
VCX3A-201ENST00000381089 MROH1Q8NDA8 1641 aa25.15■■□□□ 1.62
VCX3A-201ENST00000381089 APLP2Q06481 763 aa25.14■■□□□ 1.62
VCX3A-201ENST00000381089 KIF15Q9NS87 1388 aa25.13■■□□□ 1.61
VCX3A-201ENST00000381089 MED1Q15648 1581 aaPredicted RBP25.13■■□□□ 1.61
VCX3A-201ENST00000381089 CFAP65Q6ZU64 1925 aaKnown RBP25.12■■□□□ 1.61
VCX3A-201ENST00000381089 SYNMO15061 1565 aa25.12■■□□□ 1.61
VCX3A-201ENST00000381089 ERBINQ96RT1 1412 aa25.12■■□□□ 1.61
VCX3A-201ENST00000381089 UBR1Q8IWV7 1749 aa25.11■■□□□ 1.61
VCX3A-201ENST00000381089 SCAF11Q99590 1463 aaKnown RBP25.1■■□□□ 1.61
VCX3A-201ENST00000381089 PRDM15P57071 1507 aaPredicted RBP25.1■■□□□ 1.61
VCX3A-201ENST00000381089 ARHGAP31Q2M1Z3 1444 aa25.1■■□□□ 1.61
VCX3A-201ENST00000381089 LRRC7Q96NW7 1537 aa25.09■■□□□ 1.61
VCX3A-201ENST00000381089 RRP7BPQ9NSQ0 103 aa25.08■■□□□ 1.61
VCX3A-201ENST00000381089 CROCC2H7BZ55 1655 aa25.07■■□□□ 1.6
VCX3A-201ENST00000381089 KANK1Q14678 1352 aa25.07■■□□□ 1.6
VCX3A-201ENST00000381089 EID1Q9Y6B2 187 aa25.07■■□□□ 1.6
VCX3A-201ENST00000381089 ABCC5O15440 1437 aa25.06■■□□□ 1.6
VCX3A-201ENST00000381089 PTPN23Q9H3S7 1636 aa25.06■■□□□ 1.6
VCX3A-201ENST00000381089 TXNDC2Q86VQ3 553 aa25.06■■□□□ 1.6
VCX3A-201ENST00000381089 PHF23Q9BUL5 403 aaPredicted RBP25.06■■□□□ 1.6
VCX3A-201ENST00000381089 STRCP1A6NGW2 1772 aa25.05■■□□□ 1.6
VCX3A-201ENST00000381089 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.05■■□□□ 1.6
VCX3A-201ENST00000381089 SLIT1O75093 1534 aa25.05■■□□□ 1.6
VCX3A-201ENST00000381089 STAG3Q9UJ98 1225 aa25.04■■□□□ 1.6
VCX3A-201ENST00000381089 ALKQ9UM73 1620 aa25.04■■□□□ 1.6
VCX3A-201ENST00000381089 ARHGAP23Q9P227 1491 aa25.03■■□□□ 1.6
VCX3A-201ENST00000381089 DAPK1P53355 1430 aa25.02■■□□□ 1.6
VCX3A-201ENST00000381089 LTKP29376 864 aa25.01■■□□□ 1.59
VCX3A-201ENST00000381089 ANKRD30AQ9BXX3 1397 aa24.99■■□□□ 1.59
VCX3A-201ENST00000381089 FGD6Q6ZV73 1430 aa24.98■■□□□ 1.59
VCX3A-201ENST00000381089 SENP3Q9H4L4 574 aaPredicted RBP24.97■■□□□ 1.59
VCX3A-201ENST00000381089 PIK3C2BO00750 1634 aa24.97■■□□□ 1.59
VCX3A-201ENST00000381089 TMEM2Q9UHN6 1383 aa24.96■■□□□ 1.59
VCX3A-201ENST00000381089 LMTK2Q8IWU2 1503 aa24.94■■□□□ 1.58
VCX3A-201ENST00000381089 KDM5AP29375 1690 aaKnown RBP24.94■■□□□ 1.58
VCX3A-201ENST00000381089 EFCAB6Q5THR3 1501 aa24.93■■□□□ 1.58
VCX3A-201ENST00000381089 CHIC2Q9UKJ5 165 aa24.93■■□□□ 1.58
VCX3A-201ENST00000381089 IDI1Q13907 227 aa24.89■■□□□ 1.58
VCX3A-201ENST00000381089 XIRP1Q702N8 1843 aaKnown RBP24.86■■□□□ 1.57
VCX3A-201ENST00000381089 KCNA6P17658 529 aa24.85■■□□□ 1.57
VCX3A-201ENST00000381089 SLC52A1Q9NWF4 448 aa24.85■■□□□ 1.57
VCX3A-201ENST00000381089 NOS1P29475 1434 aa24.84■■□□□ 1.57
VCX3A-201ENST00000381089 TMEM94Q12767 1356 aa24.83■■□□□ 1.57
VCX3A-201ENST00000381089 ADGRB3O60242 1522 aa24.83■■□□□ 1.57
VCX3A-201ENST00000381089 FAM135BQ49AJ0 1406 aa24.83■■□□□ 1.57
VCX3A-201ENST00000381089 ADGRL2O95490 1459 aa24.83■■□□□ 1.56
VCX3A-201ENST00000381089 BCANQ96GW7 911 aa24.82■■□□□ 1.56
VCX3A-201ENST00000381089 PROSER2Q86WR7 435 aaPredicted RBP24.81■■□□□ 1.56
VCX3A-201ENST00000381089 SLC26A8Q96RN1 970 aa24.81■■□□□ 1.56
VCX3A-201ENST00000381089 FAM50AQ14320 339 aaKnown RBP24.8■■□□□ 1.56
VCX3A-201ENST00000381089 RPRD2Q5VT52 1461 aaKnown RBP24.8■■□□□ 1.56
VCX3A-201ENST00000381089 TET3O43151 1660 aa24.79■■□□□ 1.56
VCX3A-201ENST00000381089 ANKRD50Q9ULJ7 1429 aa24.78■■□□□ 1.56
VCX3A-201ENST00000381089 NKTRP30414 1462 aaKnown RBP24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms