RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 NISCHQ9Y2I1 1504 aa40.21■■■■■ 4.03
VCX3A-201ENST00000381089 ABCC9O60706 1549 aa36.34■■■■□ 3.41
VCX3A-201ENST00000381089 CCDC180Q9P1Z9 1646 aa36.19■■■■□ 3.38
VCX3A-201ENST00000381089 RB1CC1Q8TDY2 1594 aa34.57■■■■□ 3.13
VCX3A-201ENST00000381089 NACADO15069 1562 aa34.28■■■■□ 3.08
VCX3A-201ENST00000381089 DNAJC5BQ9UF47 199 aa34.16■■■■□ 3.06
VCX3A-201ENST00000381089 DCAF8L2P0C7V8 631 aa34.08■■■■□ 3.05
VCX3A-201ENST00000381089 PABPN1Q86U42 306 aaKnown RBP eCLIP33.8■■■■□ 3
VCX3A-201ENST00000381089 MYO15BQ96JP2 1530 aa33.74■■■□□ 2.99
VCX3A-201ENST00000381089 UNC13AQ9UPW8 1703 aa33.69■■■□□ 2.98
VCX3A-201ENST00000381089 BICRAQ9NZM4 1560 aa33.46■■■□□ 2.95
VCX3A-201ENST00000381089 ZCCHC6Q5VYS8 1495 aaKnown RBP33.28■■■□□ 2.92
VCX3A-201ENST00000381089 DCAF1Q9Y4B6 1507 aa33.23■■■□□ 2.91
VCX3A-201ENST00000381089 SHROOM4Q9ULL8 1493 aa33.13■■■□□ 2.89
VCX3A-201ENST00000381089 SCRIBQ14160 1630 aa32.94■■■□□ 2.86
VCX3A-201ENST00000381089 CC2D2AQ9P2K1 1620 aa32.82■■■□□ 2.84
VCX3A-201ENST00000381089 CECR2Q9BXF3 1484 aa32.79■■■□□ 2.84
VCX3A-201ENST00000381089 EIF4G1Q04637 1599 aaKnown RBP32.72■■■□□ 2.83
VCX3A-201ENST00000381089 NCAPD3P42695 1498 aa31.62■■■□□ 2.65
VCX3A-201ENST00000381089 DNAJC5Q9H3Z4 198 aa31.61■■■□□ 2.65
VCX3A-201ENST00000381089 ERCC6Q03468 1493 aa31.48■■■□□ 2.63
VCX3A-201ENST00000381089 ATAD2BQ9ULI0 1458 aa31.48■■■□□ 2.63
VCX3A-201ENST00000381089 CUX2O14529 1486 aa31.46■■■□□ 2.63
VCX3A-201ENST00000381089 SMARCA2P51531 1590 aa31.44■■■□□ 2.62
VCX3A-201ENST00000381089 SMARCA4P51532 1647 aa31.41■■■□□ 2.62
VCX3A-201ENST00000381089 HMGXB3Q12766 1538 aa31.39■■■□□ 2.61
VCX3A-201ENST00000381089 BAZ1AQ9NRL2 1556 aaPredicted RBP31.26■■■□□ 2.6
VCX3A-201ENST00000381089 BAZ1BQ9UIG0 1483 aaKnown RBP31.21■■■□□ 2.59
VCX3A-201ENST00000381089 NESP48681 1621 aa31.13■■■□□ 2.57
VCX3A-201ENST00000381089 PEG3Q9GZU2 1588 aa31.11■■■□□ 2.57
VCX3A-201ENST00000381089 LAMC3Q9Y6N6 1575 aa30.97■■■□□ 2.55
VCX3A-201ENST00000381089 MROH2BQ7Z745 1585 aa30.94■■■□□ 2.54
VCX3A-201ENST00000381089 THOC2Q8NI27 1593 aaKnown RBP30.88■■■□□ 2.53
VCX3A-201ENST00000381089 PDS5BQ9NTI5 1447 aa30.83■■■□□ 2.53
VCX3A-201ENST00000381089 KIF21AQ7Z4S6 1674 aa30.74■■■□□ 2.51
VCX3A-201ENST00000381089 CADPSQ9ULU8 1353 aa30.66■■■□□ 2.5
VCX3A-201ENST00000381089 WIZO95785 1651 aa30.57■■■□□ 2.48
VCX3A-201ENST00000381089 MRC2Q9UBG0 1479 aa30.54■■■□□ 2.48
VCX3A-201ENST00000381089 WDR62O43379 1518 aa30.45■■■□□ 2.47
VCX3A-201ENST00000381089 CEP164Q9UPV0 1460 aa30.39■■■□□ 2.46
VCX3A-201ENST00000381089 FANCD2Q9BXW9 1451 aa30.31■■■□□ 2.44
VCX3A-201ENST00000381089 CFTRP13569 1480 aa30.26■■■□□ 2.44
VCX3A-201ENST00000381089 RSF1Q96T23 1441 aaPredicted RBP30.25■■■□□ 2.43
VCX3A-201ENST00000381089 TOP2AP11388 1531 aaKnown RBP30.22■■■□□ 2.43
VCX3A-201ENST00000381089 TRIM41Q8WV44 630 aa30.18■■■□□ 2.42
VCX3A-201ENST00000381089 URB2Q14146 1524 aaKnown RBP30.03■■■□□ 2.4
VCX3A-201ENST00000381089 OSCARQ8IYS5 282 aa30■■■□□ 2.39
VCX3A-201ENST00000381089 PRDM2Q13029 1718 aa29.96■■■□□ 2.39
VCX3A-201ENST00000381089 CCDC88BA6NC98 1476 aa29.85■■■□□ 2.37
VCX3A-201ENST00000381089 IFT140Q96RY7 1462 aa29.79■■■□□ 2.36
VCX3A-201ENST00000381089 ABCC8Q09428 1581 aa29.71■■■□□ 2.35
VCX3A-201ENST00000381089 TOPBP1Q92547 1522 aa29.71■■■□□ 2.35
VCX3A-201ENST00000381089 ZNF608Q9ULD9 1512 aaPredicted RBP29.68■■■□□ 2.34
VCX3A-201ENST00000381089 DNMBPQ6XZF7 1577 aa29.6■■■□□ 2.33
VCX3A-201ENST00000381089 RIMBP3CA6NJZ7 1639 aa29.56■■■□□ 2.32
VCX3A-201ENST00000381089 RIMBP3BA6NNM3 1639 aa29.56■■■□□ 2.32
VCX3A-201ENST00000381089 RIMBP3Q9UFD9 1639 aa29.56■■■□□ 2.32
VCX3A-201ENST00000381089 EIF4G3O43432 1585 aaKnown RBP29.55■■■□□ 2.32
VCX3A-201ENST00000381089 ARHGEF11O15085 1522 aa29.47■■■□□ 2.31
VCX3A-201ENST00000381089 TARBP1Q13395 1621 aaKnown RBP29.43■■■□□ 2.3
VCX3A-201ENST00000381089 AQRO60306 1485 aaKnown RBP eCLIP29.42■■■□□ 2.3
VCX3A-201ENST00000381089 POLA1P09884 1462 aaPredicted RBP29.38■■■□□ 2.29
VCX3A-201ENST00000381089 CHD1O14646 1710 aa29.35■■■□□ 2.29
VCX3A-201ENST00000381089 FBLN2P98095 1184 aa29.33■■■□□ 2.29
VCX3A-201ENST00000381089 CYB5RLQ6IPT4 315 aa29.29■■■□□ 2.28
VCX3A-201ENST00000381089 SOGA1O94964 1423 aa29.28■■■□□ 2.28
VCX3A-201ENST00000381089 RAD54L2Q9Y4B4 1467 aa29.26■■■□□ 2.27
VCX3A-201ENST00000381089 WDR97A6NE52 1622 aa29.21■■■□□ 2.27
VCX3A-201ENST00000381089 TDRD9Q8NDG6 1382 aaKnown RBP29.21■■■□□ 2.27
VCX3A-201ENST00000381089 FGD5Q6ZNL6 1462 aa29.17■■■□□ 2.26
VCX3A-201ENST00000381089 ARAP1Q96P48 1450 aa29.15■■■□□ 2.26
VCX3A-201ENST00000381089 SNAPC4Q5SXM2 1469 aa29.13■■■□□ 2.25
VCX3A-201ENST00000381089 CHMP7Q8WUX9 453 aaPredicted RBP29.1■■■□□ 2.25
VCX3A-201ENST00000381089 CUX1P39880 1505 aa29.1■■■□□ 2.25
VCX3A-201ENST00000381089 MAGI1Q96QZ7 1491 aaPredicted RBP29.09■■■□□ 2.25
VCX3A-201ENST00000381089 TRHP20396 242 aaPredicted RBP29.07■■■□□ 2.24
VCX3A-201ENST00000381089 GRIN2BQ13224 1484 aa29.06■■■□□ 2.24
VCX3A-201ENST00000381089 SYNJ1O43426 1573 aa29.05■■■□□ 2.24
VCX3A-201ENST00000381089 CLASP1Q7Z460 1538 aa29.01■■■□□ 2.23
VCX3A-201ENST00000381089 SYNJ2O15056 1496 aa28.98■■■□□ 2.23
VCX3A-201ENST00000381089 GAPVD1Q14C86 1478 aa28.92■■■□□ 2.22
VCX3A-201ENST00000381089 PBRM1Q86U86 1689 aa28.9■■■□□ 2.22
VCX3A-201ENST00000381089 ABCA10Q8WWZ4 1543 aa28.85■■■□□ 2.21
VCX3A-201ENST00000381089 SUPT5HO00267 1087 aaKnown RBP28.81■■■□□ 2.2
VCX3A-201ENST00000381089 ABCA5Q8WWZ7 1642 aa28.8■■■□□ 2.2
VCX3A-201ENST00000381089 WRNQ14191 1432 aaPredicted RBP eCLIP28.74■■■□□ 2.19
VCX3A-201ENST00000381089 GRIN2AQ12879 1464 aa28.66■■■□□ 2.18
VCX3A-201ENST00000381089 ADAMTS12P58397 1594 aa28.62■■■□□ 2.17
VCX3A-201ENST00000381089 TOP2BQ02880 1626 aa28.61■■■□□ 2.17
VCX3A-201ENST00000381089 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
VCX3A-201ENST00000381089 FHAD1B1AJZ9 1412 aa28.56■■■□□ 2.16
VCX3A-201ENST00000381089 NUP160Q12769 1436 aa28.56■■■□□ 2.16
VCX3A-201ENST00000381089 CEP170Q5SW79 1584 aa28.53■■■□□ 2.16
VCX3A-201ENST00000381089 ERICH3Q5RHP9 1530 aa28.5■■■□□ 2.15
VCX3A-201ENST00000381089 ERCC6L2Q5T890 1561 aa28.49■■■□□ 2.15
VCX3A-201ENST00000381089 SHROOM2Q13796 1616 aa28.44■■■□□ 2.14
VCX3A-201ENST00000381089 AEBP2Q6ZN18 517 aaPredicted RBP28.41■■■□□ 2.14
VCX3A-201ENST00000381089 PRG4Q92954 1404 aaPredicted RBP28.32■■■□□ 2.12
VCX3A-201ENST00000381089 JPH4Q96JJ6 628 aa28.29■■■□□ 2.12
VCX3A-201ENST00000381089 RUSC2Q8N2Y8 1516 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms