RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 CCDC141Q6ZP82 1450 aa22.57■■□□□ 1.2
PTCH1-202ENST00000375271 MBD5Q9P267 1494 aa22.56■■□□□ 1.2
PTCH1-202ENST00000375271 DNMT1P26358 1616 aaKnown RBP22.56■■□□□ 1.2
PTCH1-202ENST00000375271 KDM5DQ9BY66 1539 aa22.56■■□□□ 1.2
PTCH1-202ENST00000375271 WASHC2CQ9Y4E1 1318 aa22.56■■□□□ 1.2
PTCH1-202ENST00000375271 POLR1AO95602 1720 aaPredicted RBP22.54■■□□□ 1.2
PTCH1-202ENST00000375271 FAM135AQ9P2D6 1515 aa22.54■■□□□ 1.2
PTCH1-202ENST00000375271 RSPH4AQ5TD94 716 aa22.54■■□□□ 1.2
PTCH1-202ENST00000375271 CAMSAP2Q08AD1 1489 aa22.53■■□□□ 1.2
PTCH1-202ENST00000375271 TSPY4P0CV99 314 aa22.52■■□□□ 1.2
PTCH1-202ENST00000375271 TSPY10P0CW01 314 aa22.52■■□□□ 1.2
PTCH1-202ENST00000375271 PZPP20742 1482 aa22.51■■□□□ 1.19
PTCH1-202ENST00000375271 NCOA2Q15596 1464 aa22.5■■□□□ 1.19
PTCH1-202ENST00000375271 TOM1O60784 492 aa22.5■■□□□ 1.19
PTCH1-202ENST00000375271 PIP4K2BP78356 416 aa22.5■■□□□ 1.19
PTCH1-202ENST00000375271 CPS1P31327 1500 aa22.5■■□□□ 1.19
PTCH1-202ENST00000375271 ANKLE2Q86XL3 938 aa22.49■■□□□ 1.19
PTCH1-202ENST00000375271 FBXO31Q5XUX0 539 aaPredicted RBP22.48■■□□□ 1.19
PTCH1-202ENST00000375271 THEMISQ8N1K5 641 aaPredicted RBP22.48■■□□□ 1.19
PTCH1-202ENST00000375271 NLRP1Q9C000 1473 aa22.45■■□□□ 1.18
PTCH1-202ENST00000375271 UGGT1Q9NYU2 1555 aa22.44■■□□□ 1.18
PTCH1-202ENST00000375271 SHANK2Q9UPX8 1470 aa22.44■■□□□ 1.18
PTCH1-202ENST00000375271 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.43■■□□□ 1.18
PTCH1-202ENST00000375271 NEURL4Q96JN8 1562 aa22.42■■□□□ 1.18
PTCH1-202ENST00000375271 MIA2Q96PC5 1412 aa22.42■■□□□ 1.18
PTCH1-202ENST00000375271 ARHGEF5Q12774 1597 aa22.42■■□□□ 1.18
PTCH1-202ENST00000375271 NPHP4O75161 1426 aaPredicted RBP22.4■■□□□ 1.18
PTCH1-202ENST00000375271 HSPA1LP34931 641 aa22.39■■□□□ 1.17
PTCH1-202ENST00000375271 ZC3H13Q5T200 1668 aaKnown RBP22.38■■□□□ 1.17
PTCH1-202ENST00000375271 PHF23Q9BUL5 403 aaPredicted RBP22.37■■□□□ 1.17
PTCH1-202ENST00000375271 DEPDC5O75140 1603 aa22.35■■□□□ 1.17
PTCH1-202ENST00000375271 IQGAP1P46940 1657 aa22.35■■□□□ 1.17
PTCH1-202ENST00000375271 MED1Q15648 1581 aaPredicted RBP22.34■■□□□ 1.17
PTCH1-202ENST00000375271 RNF17Q9BXT8 1623 aaKnown RBP22.33■■□□□ 1.17
PTCH1-202ENST00000375271 MED14O60244 1454 aa22.32■■□□□ 1.16
PTCH1-202ENST00000375271 VWDEQ8N2E2 1590 aa22.32■■□□□ 1.16
PTCH1-202ENST00000375271 ABCC3O15438 1527 aa22.31■■□□□ 1.16
PTCH1-202ENST00000375271 EIF2AK4Q9P2K8 1649 aaKnown RBP22.31■■□□□ 1.16
PTCH1-202ENST00000375271 LRRC9Q6ZRR7 1453 aa22.31■■□□□ 1.16
PTCH1-202ENST00000375271 MAST1Q9Y2H9 1570 aa22.3■■□□□ 1.16
PTCH1-202ENST00000375271 VPS8Q8N3P4 1428 aa22.3■■□□□ 1.16
PTCH1-202ENST00000375271 ERVK-7P63135 1459 aa22.28■■□□□ 1.16
PTCH1-202ENST00000375271 SENP3Q9H4L4 574 aaPredicted RBP22.28■■□□□ 1.16
PTCH1-202ENST00000375271 SYNMO15061 1565 aa22.27■■□□□ 1.16
PTCH1-202ENST00000375271 CEP152O94986 1710 aa22.25■■□□□ 1.15
PTCH1-202ENST00000375271 MYOM3Q5VTT5 1437 aa22.24■■□□□ 1.15
PTCH1-202ENST00000375271 DUOX2Q9NRD8 1548 aa22.24■■□□□ 1.15
PTCH1-202ENST00000375271 CFAP65Q6ZU64 1925 aaKnown RBP22.23■■□□□ 1.15
PTCH1-202ENST00000375271 APLP2Q06481 763 aa22.22■■□□□ 1.15
PTCH1-202ENST00000375271 SCAF11Q99590 1463 aaKnown RBP22.22■■□□□ 1.15
PTCH1-202ENST00000375271 STAG3Q9UJ98 1225 aa22.21■■□□□ 1.15
PTCH1-202ENST00000375271 EID1Q9Y6B2 187 aa22.21■■□□□ 1.15
PTCH1-202ENST00000375271 LRRC7Q96NW7 1537 aa22.21■■□□□ 1.15
PTCH1-202ENST00000375271 UBR1Q8IWV7 1749 aa22.2■■□□□ 1.14
PTCH1-202ENST00000375271 KANK1Q14678 1352 aa22.18■■□□□ 1.14
PTCH1-202ENST00000375271 KIF15Q9NS87 1388 aa22.18■■□□□ 1.14
PTCH1-202ENST00000375271 TXNDC2Q86VQ3 553 aa22.18■■□□□ 1.14
PTCH1-202ENST00000375271 MROH1Q8NDA8 1641 aa22.17■■□□□ 1.14
PTCH1-202ENST00000375271 MAP3K1Q13233 1512 aa22.17■■□□□ 1.14
PTCH1-202ENST00000375271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.17■■□□□ 1.14
PTCH1-202ENST00000375271 ERBINQ96RT1 1412 aa22.15■■□□□ 1.14
PTCH1-202ENST00000375271 STRCP1A6NGW2 1772 aa22.15■■□□□ 1.14
PTCH1-202ENST00000375271 KANK4Q5T7N3 995 aaPredicted RBP22.14■■□□□ 1.13
PTCH1-202ENST00000375271 RRP7BPQ9NSQ0 103 aa22.14■■□□□ 1.13
PTCH1-202ENST00000375271 PRDM15P57071 1507 aaPredicted RBP22.14■■□□□ 1.13
PTCH1-202ENST00000375271 CROCC2H7BZ55 1655 aa22.12■■□□□ 1.13
PTCH1-202ENST00000375271 ALKQ9UM73 1620 aa22.12■■□□□ 1.13
PTCH1-202ENST00000375271 SLIT1O75093 1534 aa22.11■■□□□ 1.13
PTCH1-202ENST00000375271 ARHGAP31Q2M1Z3 1444 aa22.11■■□□□ 1.13
PTCH1-202ENST00000375271 LOC105371045A0A1W2PR82 267 aa22.1■■□□□ 1.13
PTCH1-202ENST00000375271 PTPN23Q9H3S7 1636 aa22.09■■□□□ 1.13
PTCH1-202ENST00000375271 ARHGAP23Q9P227 1491 aa22.09■■□□□ 1.13
PTCH1-202ENST00000375271 LTKP29376 864 aa22.08■■□□□ 1.13
PTCH1-202ENST00000375271 PIK3C2BO00750 1634 aa22.07■■□□□ 1.12
PTCH1-202ENST00000375271 BCANQ96GW7 911 aa22.06■■□□□ 1.12
PTCH1-202ENST00000375271 ANKRD30AQ9BXX3 1397 aa22.06■■□□□ 1.12
PTCH1-202ENST00000375271 ABCC5O15440 1437 aa22.06■■□□□ 1.12
PTCH1-202ENST00000375271 TMEM2Q9UHN6 1383 aa22.05■■□□□ 1.12
PTCH1-202ENST00000375271 EFCAB6Q5THR3 1501 aa22.05■■□□□ 1.12
PTCH1-202ENST00000375271 DAPK1P53355 1430 aa22.05■■□□□ 1.12
PTCH1-202ENST00000375271 CHIC2Q9UKJ5 165 aa22.02■■□□□ 1.12
PTCH1-202ENST00000375271 KDM5AP29375 1690 aaKnown RBP22.01■■□□□ 1.11
PTCH1-202ENST00000375271 FGD6Q6ZV73 1430 aa21.99■■□□□ 1.11
PTCH1-202ENST00000375271 PROSER2Q86WR7 435 aaPredicted RBP21.99■■□□□ 1.11
PTCH1-202ENST00000375271 TMEM94Q12767 1356 aa21.99■■□□□ 1.11
PTCH1-202ENST00000375271 XIRP1Q702N8 1843 aaKnown RBP21.98■■□□□ 1.11
PTCH1-202ENST00000375271 KCNA6P17658 529 aa21.97■■□□□ 1.11
PTCH1-202ENST00000375271 IDI1Q13907 227 aa21.97■■□□□ 1.11
PTCH1-202ENST00000375271 LMTK2Q8IWU2 1503 aa21.96■■□□□ 1.11
PTCH1-202ENST00000375271 SLC26A8Q96RN1 970 aa21.96■■□□□ 1.11
PTCH1-202ENST00000375271 FAM135BQ49AJ0 1406 aa21.96■■□□□ 1.11
PTCH1-202ENST00000375271 PPP1R15AO75807 674 aaPredicted RBP21.95■■□□□ 1.1
PTCH1-202ENST00000375271 ADGRB3O60242 1522 aa21.95■■□□□ 1.1
PTCH1-202ENST00000375271 MSH6P52701 1360 aa21.94■■□□□ 1.1
PTCH1-202ENST00000375271 SLC52A1Q9NWF4 448 aa21.93■■□□□ 1.1
PTCH1-202ENST00000375271 HDGFP51858 240 aaKnown RBP21.92■■□□□ 1.1
PTCH1-202ENST00000375271 ROBO1Q9Y6N7 1651 aa21.91■■□□□ 1.1
PTCH1-202ENST00000375271 NKTRP30414 1462 aaKnown RBP21.91■■□□□ 1.1
PTCH1-202ENST00000375271 FAM50AQ14320 339 aaKnown RBP21.91■■□□□ 1.1
PTCH1-202ENST00000375271 RBM33Q96EV2 1170 aaKnown RBP21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms