RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 NISCHQ9Y2I1 1504 aa35.43■■■■□ 3.26
PTCH1-202ENST00000375271 ABCC9O60706 1549 aa32.21■■■□□ 2.75
PTCH1-202ENST00000375271 CCDC180Q9P1Z9 1646 aa31.97■■■□□ 2.71
PTCH1-202ENST00000375271 RB1CC1Q8TDY2 1594 aa30.59■■■□□ 2.49
PTCH1-202ENST00000375271 NACADO15069 1562 aa30.28■■■□□ 2.44
PTCH1-202ENST00000375271 DNAJC5BQ9UF47 199 aa30.25■■■□□ 2.43
PTCH1-202ENST00000375271 DCAF8L2P0C7V8 631 aa30.2■■■□□ 2.43
PTCH1-202ENST00000375271 PABPN1Q86U42 306 aaKnown RBP eCLIP29.93■■■□□ 2.38
PTCH1-202ENST00000375271 UNC13AQ9UPW8 1703 aa29.79■■■□□ 2.36
PTCH1-202ENST00000375271 MYO15BQ96JP2 1530 aa29.71■■■□□ 2.35
PTCH1-202ENST00000375271 BICRAQ9NZM4 1560 aa29.54■■■□□ 2.32
PTCH1-202ENST00000375271 ZCCHC6Q5VYS8 1495 aaKnown RBP29.31■■■□□ 2.28
PTCH1-202ENST00000375271 SHROOM4Q9ULL8 1493 aa29.26■■■□□ 2.27
PTCH1-202ENST00000375271 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
PTCH1-202ENST00000375271 SCRIBQ14160 1630 aa29.14■■■□□ 2.26
PTCH1-202ENST00000375271 CC2D2AQ9P2K1 1620 aa29.06■■■□□ 2.24
PTCH1-202ENST00000375271 CECR2Q9BXF3 1484 aa29.05■■■□□ 2.24
PTCH1-202ENST00000375271 EIF4G1Q04637 1599 aaKnown RBP28.94■■■□□ 2.22
PTCH1-202ENST00000375271 DNAJC5Q9H3Z4 198 aa28.07■■■□□ 2.08
PTCH1-202ENST00000375271 ERCC6Q03468 1493 aa27.95■■■□□ 2.07
PTCH1-202ENST00000375271 CUX2O14529 1486 aa27.89■■■□□ 2.05
PTCH1-202ENST00000375271 NCAPD3P42695 1498 aa27.89■■■□□ 2.05
PTCH1-202ENST00000375271 SMARCA2P51531 1590 aa27.78■■■□□ 2.04
PTCH1-202ENST00000375271 ATAD2BQ9ULI0 1458 aa27.78■■■□□ 2.04
PTCH1-202ENST00000375271 SMARCA4P51532 1647 aa27.73■■■□□ 2.03
PTCH1-202ENST00000375271 HMGXB3Q12766 1538 aa27.72■■■□□ 2.03
PTCH1-202ENST00000375271 BAZ1AQ9NRL2 1556 aaPredicted RBP27.6■■■□□ 2.01
PTCH1-202ENST00000375271 BAZ1BQ9UIG0 1483 aaKnown RBP27.6■■■□□ 2.01
PTCH1-202ENST00000375271 NESP48681 1621 aa27.54■■■□□ 2
PTCH1-202ENST00000375271 PEG3Q9GZU2 1588 aa27.4■■□□□ 1.98
PTCH1-202ENST00000375271 LAMC3Q9Y6N6 1575 aa27.39■■□□□ 1.97
PTCH1-202ENST00000375271 THOC2Q8NI27 1593 aaKnown RBP27.32■■□□□ 1.96
PTCH1-202ENST00000375271 MROH2BQ7Z745 1585 aa27.27■■□□□ 1.96
PTCH1-202ENST00000375271 PDS5BQ9NTI5 1447 aa27.27■■□□□ 1.96
PTCH1-202ENST00000375271 KIF21AQ7Z4S6 1674 aa27.23■■□□□ 1.95
PTCH1-202ENST00000375271 CADPSQ9ULU8 1353 aa27.08■■□□□ 1.93
PTCH1-202ENST00000375271 MRC2Q9UBG0 1479 aa27.02■■□□□ 1.92
PTCH1-202ENST00000375271 WIZO95785 1651 aa26.98■■□□□ 1.91
PTCH1-202ENST00000375271 WDR62O43379 1518 aa26.91■■□□□ 1.9
PTCH1-202ENST00000375271 CEP164Q9UPV0 1460 aa26.9■■□□□ 1.9
PTCH1-202ENST00000375271 TRIM41Q8WV44 630 aa26.9■■□□□ 1.9
PTCH1-202ENST00000375271 FANCD2Q9BXW9 1451 aa26.8■■□□□ 1.88
PTCH1-202ENST00000375271 CFTRP13569 1480 aa26.68■■□□□ 1.86
PTCH1-202ENST00000375271 TOP2AP11388 1531 aaKnown RBP26.65■■□□□ 1.86
PTCH1-202ENST00000375271 RSF1Q96T23 1441 aaPredicted RBP26.62■■□□□ 1.85
PTCH1-202ENST00000375271 OSCARQ8IYS5 282 aa26.59■■□□□ 1.85
PTCH1-202ENST00000375271 URB2Q14146 1524 aaKnown RBP26.53■■□□□ 1.84
PTCH1-202ENST00000375271 PRDM2Q13029 1718 aa26.48■■□□□ 1.83
PTCH1-202ENST00000375271 IFT140Q96RY7 1462 aa26.34■■□□□ 1.81
PTCH1-202ENST00000375271 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
PTCH1-202ENST00000375271 ZNF608Q9ULD9 1512 aaPredicted RBP26.24■■□□□ 1.79
PTCH1-202ENST00000375271 ABCC8Q09428 1581 aa26.24■■□□□ 1.79
PTCH1-202ENST00000375271 TOPBP1Q92547 1522 aa26.24■■□□□ 1.79
PTCH1-202ENST00000375271 RIMBP3CA6NJZ7 1639 aa26.23■■□□□ 1.79
PTCH1-202ENST00000375271 RIMBP3BA6NNM3 1639 aa26.23■■□□□ 1.79
PTCH1-202ENST00000375271 RIMBP3Q9UFD9 1639 aa26.23■■□□□ 1.79
PTCH1-202ENST00000375271 EIF4G3O43432 1585 aaKnown RBP26.16■■□□□ 1.78
PTCH1-202ENST00000375271 DNMBPQ6XZF7 1577 aa26.15■■□□□ 1.78
PTCH1-202ENST00000375271 ARHGEF11O15085 1522 aa26.13■■□□□ 1.77
PTCH1-202ENST00000375271 FBLN2P98095 1184 aa26.04■■□□□ 1.76
PTCH1-202ENST00000375271 CHD1O14646 1710 aa26.01■■□□□ 1.75
PTCH1-202ENST00000375271 AQRO60306 1485 aaKnown RBP eCLIP26■■□□□ 1.75
PTCH1-202ENST00000375271 CYB5RLQ6IPT4 315 aa25.99■■□□□ 1.75
PTCH1-202ENST00000375271 TARBP1Q13395 1621 aaKnown RBP25.98■■□□□ 1.75
PTCH1-202ENST00000375271 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.74
PTCH1-202ENST00000375271 TRHP20396 242 aaPredicted RBP25.89■■□□□ 1.74
PTCH1-202ENST00000375271 SOGA1O94964 1423 aa25.86■■□□□ 1.73
PTCH1-202ENST00000375271 RAD54L2Q9Y4B4 1467 aa25.85■■□□□ 1.73
PTCH1-202ENST00000375271 ARAP1Q96P48 1450 aa25.82■■□□□ 1.72
PTCH1-202ENST00000375271 TDRD9Q8NDG6 1382 aaKnown RBP25.82■■□□□ 1.72
PTCH1-202ENST00000375271 WDR97A6NE52 1622 aa25.8■■□□□ 1.72
PTCH1-202ENST00000375271 SNAPC4Q5SXM2 1469 aa25.78■■□□□ 1.72
PTCH1-202ENST00000375271 FGD5Q6ZNL6 1462 aa25.78■■□□□ 1.72
PTCH1-202ENST00000375271 CHMP7Q8WUX9 453 aaPredicted RBP25.77■■□□□ 1.72
PTCH1-202ENST00000375271 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
PTCH1-202ENST00000375271 MAGI1Q96QZ7 1491 aaPredicted RBP25.71■■□□□ 1.71
PTCH1-202ENST00000375271 GRIN2BQ13224 1484 aa25.68■■□□□ 1.7
PTCH1-202ENST00000375271 CUX1P39880 1505 aa25.66■■□□□ 1.7
PTCH1-202ENST00000375271 CLASP1Q7Z460 1538 aa25.64■■□□□ 1.7
PTCH1-202ENST00000375271 SYNJ2O15056 1496 aa25.61■■□□□ 1.69
PTCH1-202ENST00000375271 PBRM1Q86U86 1689 aa25.57■■□□□ 1.68
PTCH1-202ENST00000375271 GAPVD1Q14C86 1478 aa25.55■■□□□ 1.68
PTCH1-202ENST00000375271 ABCA10Q8WWZ4 1543 aa25.44■■□□□ 1.66
PTCH1-202ENST00000375271 ABCA5Q8WWZ7 1642 aa25.42■■□□□ 1.66
PTCH1-202ENST00000375271 SUPT5HO00267 1087 aaKnown RBP25.41■■□□□ 1.66
PTCH1-202ENST00000375271 AEBP2Q6ZN18 517 aaPredicted RBP25.38■■□□□ 1.65
PTCH1-202ENST00000375271 WRNQ14191 1432 aaPredicted RBP eCLIP25.36■■□□□ 1.65
PTCH1-202ENST00000375271 GRIN2AQ12879 1464 aa25.33■■□□□ 1.65
PTCH1-202ENST00000375271 ADAMTS12P58397 1594 aa25.29■■□□□ 1.64
PTCH1-202ENST00000375271 TOP2BQ02880 1626 aa25.23■■□□□ 1.63
PTCH1-202ENST00000375271 FHAD1B1AJZ9 1412 aa25.22■■□□□ 1.63
PTCH1-202ENST00000375271 BIVM-ERCC5R4GMW8 1640 aa25.22■■□□□ 1.63
PTCH1-202ENST00000375271 CEP170Q5SW79 1584 aa25.21■■□□□ 1.63
PTCH1-202ENST00000375271 NUP160Q12769 1436 aa25.2■■□□□ 1.62
PTCH1-202ENST00000375271 ERCC6L2Q5T890 1561 aa25.19■■□□□ 1.62
PTCH1-202ENST00000375271 ERICH3Q5RHP9 1530 aa25.16■■□□□ 1.62
PTCH1-202ENST00000375271 SHROOM2Q13796 1616 aa25.12■■□□□ 1.61
PTCH1-202ENST00000375271 PRG4Q92954 1404 aaPredicted RBP25.04■■□□□ 1.6
PTCH1-202ENST00000375271 NPM1P06748 294 aaKnown RBP eCLIP25■■□□□ 1.59
PTCH1-202ENST00000375271 JPH4Q96JJ6 628 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms