RNA–Protein interactions for RNA: ENST00000361716.7

VAMP1-201, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best) BASIC

Gene VAMP1, Length 3,449 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-201ENST00000361716 C20orf194Q5TEA3 1177 aa16.5■□□□□ 0.23
VAMP1-201ENST00000361716 MAGI3Q5TCQ9 1506 aa16.49■□□□□ 0.23
VAMP1-201ENST00000361716 RNF123Q5XPI4 1314 aa16.49■□□□□ 0.23
VAMP1-201ENST00000361716 SENP3Q9H4L4 574 aaPredicted RBP16.48■□□□□ 0.23
VAMP1-201ENST00000361716 NUP160Q12769 1436 aa16.48■□□□□ 0.23
VAMP1-201ENST00000361716 NCOA1Q15788 1441 aa16.47■□□□□ 0.23
VAMP1-201ENST00000361716 TSPY4P0CV99 314 aa16.47■□□□□ 0.23
VAMP1-201ENST00000361716 TSPY10P0CW01 314 aa16.47■□□□□ 0.23
VAMP1-201ENST00000361716 ARID3AQ99856 593 aa16.47■□□□□ 0.23
VAMP1-201ENST00000361716 PTPN23Q9H3S7 1636 aa16.46■□□□□ 0.23
VAMP1-201ENST00000361716 CANXP27824 592 aaKnown RBP16.45■□□□□ 0.22
VAMP1-201ENST00000361716 FAM161AQ3B820 660 aa16.45■□□□□ 0.22
VAMP1-201ENST00000361716 HECW1Q76N89 1606 aa16.45■□□□□ 0.22
VAMP1-201ENST00000361716 NUP155O75694 1391 aa16.44■□□□□ 0.22
VAMP1-201ENST00000361716 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.43■□□□□ 0.22
VAMP1-201ENST00000361716 NEUROD2Q15784 382 aa16.43■□□□□ 0.22
VAMP1-201ENST00000361716 PLEKHD1A6NEE1 506 aa16.42■□□□□ 0.22
VAMP1-201ENST00000361716 CARMIL2Q6F5E8 1435 aa16.42■□□□□ 0.22
VAMP1-201ENST00000361716 PLEKHG5O94827 1062 aa16.42■□□□□ 0.22
VAMP1-201ENST00000361716 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
VAMP1-201ENST00000361716 PTPRGP23470 1445 aa16.42■□□□□ 0.22
VAMP1-201ENST00000361716 EHBP1L1Q8N3D4 1523 aa16.41■□□□□ 0.22
VAMP1-201ENST00000361716 L1TD1Q5T7N2 865 aaKnown RBP16.41■□□□□ 0.22
VAMP1-201ENST00000361716 PODXL2Q9NZ53 605 aa16.41■□□□□ 0.22
VAMP1-201ENST00000361716 A0A0U1RQG5 324 aaPredicted RBP16.4■□□□□ 0.22
VAMP1-201ENST00000361716 HNRNPMP52272 730 aaKnown RBP eCLIP16.4■□□□□ 0.22
VAMP1-201ENST00000361716 SUPT6HQ7KZ85 1726 aaKnown RBP16.4■□□□□ 0.22
VAMP1-201ENST00000361716 CCDC146Q8IYE0 955 aa16.4■□□□□ 0.22
VAMP1-201ENST00000361716 PANK2Q9BZ23 570 aa16.4■□□□□ 0.22
VAMP1-201ENST00000361716 ERCC6L2Q5T890 1561 aa16.39■□□□□ 0.21
VAMP1-201ENST00000361716 EPRSP07814 1512 aaKnown RBP16.39■□□□□ 0.21
VAMP1-201ENST00000361716 ANKRD30BQ9BXX2 1392 aa16.39■□□□□ 0.21
VAMP1-201ENST00000361716 GOLGA6L3A6NEY3 463 aa16.38■□□□□ 0.21
VAMP1-201ENST00000361716 NBPF1Q3BBV0 1214 aa16.38■□□□□ 0.21
VAMP1-201ENST00000361716 ROCK2O75116 1388 aaKnown RBP16.38■□□□□ 0.21
VAMP1-201ENST00000361716 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
VAMP1-201ENST00000361716 TNNT2P45379 298 aaPredicted RBP16.37■□□□□ 0.21
VAMP1-201ENST00000361716 BECN1Q14457 450 aa16.37■□□□□ 0.21
VAMP1-201ENST00000361716 CHD1O14646 1710 aa16.37■□□□□ 0.21
VAMP1-201ENST00000361716 RAPGEF6Q8TEU7 1601 aa16.37■□□□□ 0.21
VAMP1-201ENST00000361716 NLRP13Q86W25 1043 aa16.36■□□□□ 0.21
VAMP1-201ENST00000361716 PANK3Q9H999 370 aa16.36■□□□□ 0.21
VAMP1-201ENST00000361716 NUP153P49790 1475 aaKnown RBP16.34■□□□□ 0.21
VAMP1-201ENST00000361716 RALBP1Q15311 655 aa16.34■□□□□ 0.21
VAMP1-201ENST00000361716 C8orf34Q49A92 452 aa16.34■□□□□ 0.21
VAMP1-201ENST00000361716 KTN1Q86UP2 1357 aaKnown RBP16.34■□□□□ 0.21
VAMP1-201ENST00000361716 CENPQQ7L2Z9 268 aaPredicted RBP16.33■□□□□ 0.21
VAMP1-201ENST00000361716 TRIM44Q96DX7 344 aaPredicted RBP16.33■□□□□ 0.21
VAMP1-201ENST00000361716 KIF15Q9NS87 1388 aa16.33■□□□□ 0.21
VAMP1-201ENST00000361716 SHROOM2Q13796 1616 aa16.33■□□□□ 0.21
VAMP1-201ENST00000361716 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
VAMP1-201ENST00000361716 DHX29Q7Z478 1369 aaKnown RBP16.32■□□□□ 0.2
VAMP1-201ENST00000361716 CYB5RLQ6IPT4 315 aa16.31■□□□□ 0.2
VAMP1-201ENST00000361716 KNSTRNQ9Y448 316 aa16.31■□□□□ 0.2
VAMP1-201ENST00000361716 KDM6BO15054 1643 aa16.31■□□□□ 0.2
VAMP1-201ENST00000361716 TCOF1Q13428 1488 aaKnown RBP16.3■□□□□ 0.2
VAMP1-201ENST00000361716 XRCC6P12956 609 aaKnown RBP eCLIP16.3■□□□□ 0.2
VAMP1-201ENST00000361716 UPF2Q9HAU5 1272 aaKnown RBP16.3■□□□□ 0.2
VAMP1-201ENST00000361716 ADAMTS8Q9UP79 889 aa16.29■□□□□ 0.2
VAMP1-201ENST00000361716 ADCY10Q96PN6 1610 aa16.28■□□□□ 0.2
VAMP1-201ENST00000361716 PDE3BQ13370 1112 aa16.28■□□□□ 0.2
VAMP1-201ENST00000361716 ABCA8O94911 1581 aa16.28■□□□□ 0.2
VAMP1-201ENST00000361716 KDM5BQ9UGL1 1544 aa16.28■□□□□ 0.2
VAMP1-201ENST00000361716 SEC24BO95487 1268 aa16.28■□□□□ 0.2
VAMP1-201ENST00000361716 RRP9O43818 475 aaKnown RBP16.28■□□□□ 0.2
VAMP1-201ENST00000361716 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.28■□□□□ 0.2
VAMP1-201ENST00000361716 MYH16Q9H6N6 1097 aa16.26■□□□□ 0.19
VAMP1-201ENST00000361716 RBM10P98175 930 aaKnown RBP16.26■□□□□ 0.19
VAMP1-201ENST00000361716 RPRD2Q5VT52 1461 aaKnown RBP16.26■□□□□ 0.19
VAMP1-201ENST00000361716 DAPK1P53355 1430 aa16.25■□□□□ 0.19
VAMP1-201ENST00000361716 ZBTB7CA1YPR0 619 aa16.25■□□□□ 0.19
VAMP1-201ENST00000361716 CHGAP10645 457 aaKnown RBP16.25■□□□□ 0.19
VAMP1-201ENST00000361716 ABCC5O15440 1437 aa16.24■□□□□ 0.19
VAMP1-201ENST00000361716 BCL2L13Q9BXK5 485 aa16.24■□□□□ 0.19
VAMP1-201ENST00000361716 DENND4BO75064 1496 aaPredicted RBP16.23■□□□□ 0.19
VAMP1-201ENST00000361716 ANKRD30AQ9BXX3 1397 aa16.23■□□□□ 0.19
VAMP1-201ENST00000361716 CLUAP1Q96AJ1 413 aa16.23■□□□□ 0.19
VAMP1-201ENST00000361716 ATP10BO94823 1461 aa16.22■□□□□ 0.19
VAMP1-201ENST00000361716 TMF1P82094 1093 aa16.22■□□□□ 0.19
VAMP1-201ENST00000361716 RRP7AQ9Y3A4 280 aaKnown RBP16.22■□□□□ 0.19
VAMP1-201ENST00000361716 BRD4O60885 1362 aaPredicted RBP16.22■□□□□ 0.19
VAMP1-201ENST00000361716 APAF1O14727 1248 aa16.2■□□□□ 0.18
VAMP1-201ENST00000361716 GCC2Q8IWJ2 1684 aa16.2■□□□□ 0.18
VAMP1-201ENST00000361716 BCAR3O75815 825 aa16.19■□□□□ 0.18
VAMP1-201ENST00000361716 CLCN1P35523 988 aa16.19■□□□□ 0.18
VAMP1-201ENST00000361716 GOLGA2Q08379 1002 aa16.19■□□□□ 0.18
VAMP1-201ENST00000361716 MIA2Q96PC5 1412 aa16.19■□□□□ 0.18
VAMP1-201ENST00000361716 CLASP1Q7Z460 1538 aa16.19■□□□□ 0.18
VAMP1-201ENST00000361716 ESPNB1AK53 854 aa16.19■□□□□ 0.18
VAMP1-201ENST00000361716 ANKRD50Q9ULJ7 1429 aa16.18■□□□□ 0.18
VAMP1-201ENST00000361716 FOXD4L1Q9NU39 408 aa16.18■□□□□ 0.18
VAMP1-201ENST00000361716 FAM13BQ9NYF5 915 aa16.18■□□□□ 0.18
VAMP1-201ENST00000361716 COG6Q9Y2V7 657 aa16.18■□□□□ 0.18
VAMP1-201ENST00000361716 TRAK2O60296 914 aa16.18■□□□□ 0.18
VAMP1-201ENST00000361716 KIF14Q15058 1648 aa16.17■□□□□ 0.18
VAMP1-201ENST00000361716 KIAA1107Q9UPP5 1409 aa16.16■□□□□ 0.18
VAMP1-201ENST00000361716 NPM1P06748 294 aaKnown RBP eCLIP16.16■□□□□ 0.18
VAMP1-201ENST00000361716 KDM2BQ8NHM5 1336 aa16.16■□□□□ 0.18
VAMP1-201ENST00000361716 IGHDP01880 384 aa16.16■□□□□ 0.18
VAMP1-201ENST00000361716 MFAP1P55081 439 aaKnown RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms