RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 KIF3BO15066 747 aa26.03■■□□□ 1.76
CLN3-203ENST00000357806 RRBP1Q9P2E9 1410 aaKnown RBP26.03■■□□□ 1.76
CLN3-203ENST00000357806 SETD1BQ9UPS6 1966 aaKnown RBP26.02■■□□□ 1.76
CLN3-203ENST00000357806 KDM5DQ9BY66 1539 aa26.02■■□□□ 1.76
CLN3-203ENST00000357806 PLPPR3Q6T4P5 718 aa26.01■■□□□ 1.75
CLN3-203ENST00000357806 NCOA1Q15788 1441 aa26■■□□□ 1.75
CLN3-203ENST00000357806 DEPDC5O75140 1603 aa26■■□□□ 1.75
CLN3-203ENST00000357806 MROH1Q8NDA8 1641 aa26■■□□□ 1.75
CLN3-203ENST00000357806 CHIC2Q9UKJ5 165 aa25.99■■□□□ 1.75
CLN3-203ENST00000357806 PPP6R1Q9UPN7 881 aa25.99■■□□□ 1.75
CLN3-203ENST00000357806 CEP152O94986 1710 aa25.98■■□□□ 1.75
CLN3-203ENST00000357806 RRP7BPQ9NSQ0 103 aa25.98■■□□□ 1.75
CLN3-203ENST00000357806 PRDM15P57071 1507 aaPredicted RBP25.96■■□□□ 1.75
CLN3-203ENST00000357806 PTPRKQ15262 1439 aa25.95■■□□□ 1.74
CLN3-203ENST00000357806 CEBPAP49715 358 aaPredicted RBP25.94■■□□□ 1.74
CLN3-203ENST00000357806 ZMYM3Q14202 1370 aa25.93■■□□□ 1.74
CLN3-203ENST00000357806 LMTK3Q96Q04 1460 aa25.93■■□□□ 1.74
CLN3-203ENST00000357806 CAMSAP1Q5T5Y3 1602 aa25.91■■□□□ 1.74
CLN3-203ENST00000357806 ROCK1Q13464 1354 aa25.91■■□□□ 1.74
CLN3-203ENST00000357806 ABCC3O15438 1527 aa25.9■■□□□ 1.74
CLN3-203ENST00000357806 NPATQ14207 1427 aa25.89■■□□□ 1.73
CLN3-203ENST00000357806 WASHC2CQ9Y4E1 1318 aa25.88■■□□□ 1.73
CLN3-203ENST00000357806 MYO3AQ8NEV4 1616 aa25.87■■□□□ 1.73
CLN3-203ENST00000357806 ITGAEP38570 1179 aa25.86■■□□□ 1.73
CLN3-203ENST00000357806 ANKRD50Q9ULJ7 1429 aa25.86■■□□□ 1.73
CLN3-203ENST00000357806 UHRF1BP1Q6BDS2 1440 aa25.85■■□□□ 1.73
CLN3-203ENST00000357806 PZPP20742 1482 aa25.85■■□□□ 1.73
CLN3-203ENST00000357806 ZNF142P52746 1687 aaPredicted RBP25.85■■□□□ 1.73
CLN3-203ENST00000357806 GCC2Q8IWJ2 1684 aa25.85■■□□□ 1.73
CLN3-203ENST00000357806 CFAP65Q6ZU64 1925 aaKnown RBP25.84■■□□□ 1.73
CLN3-203ENST00000357806 UNC13BO14795 1591 aa25.83■■□□□ 1.73
CLN3-203ENST00000357806 VWDEQ8N2E2 1590 aa25.81■■□□□ 1.72
CLN3-203ENST00000357806 KANK1Q14678 1352 aa25.8■■□□□ 1.72
CLN3-203ENST00000357806 LMTK2Q8IWU2 1503 aa25.76■■□□□ 1.71
CLN3-203ENST00000357806 CEP170BQ9Y4F5 1589 aaPredicted RBP25.76■■□□□ 1.71
CLN3-203ENST00000357806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.75■■□□□ 1.71
CLN3-203ENST00000357806 SPATA31D1Q6ZQQ2 1576 aa25.74■■□□□ 1.71
CLN3-203ENST00000357806 TET3O43151 1660 aa25.73■■□□□ 1.71
CLN3-203ENST00000357806 EFCAB6Q5THR3 1501 aa25.73■■□□□ 1.71
CLN3-203ENST00000357806 IQGAP3Q86VI3 1631 aa25.73■■□□□ 1.71
CLN3-203ENST00000357806 ARHGAP31Q2M1Z3 1444 aa25.71■■□□□ 1.71
CLN3-203ENST00000357806 HSPA2P54652 639 aa25.7■■□□□ 1.7
CLN3-203ENST00000357806 TNRQ92752 1358 aa25.7■■□□□ 1.7
CLN3-203ENST00000357806 ERVK-7P63135 1459 aa25.7■■□□□ 1.7
CLN3-203ENST00000357806 STRCQ7RTU9 1775 aa25.68■■□□□ 1.7
CLN3-203ENST00000357806 FBXO31Q5XUX0 539 aaPredicted RBP25.67■■□□□ 1.7
CLN3-203ENST00000357806 NAIPQ13075 1403 aa25.67■■□□□ 1.7
CLN3-203ENST00000357806 HFM1A2PYH4 1435 aa25.66■■□□□ 1.7
CLN3-203ENST00000357806 A2ML1A8K2U0 1454 aa25.66■■□□□ 1.7
CLN3-203ENST00000357806 NLRP1Q9C000 1473 aa25.65■■□□□ 1.7
CLN3-203ENST00000357806 E9PCH4 1651 aa25.64■■□□□ 1.69
CLN3-203ENST00000357806 RPRD2Q5VT52 1461 aaKnown RBP25.62■■□□□ 1.69
CLN3-203ENST00000357806 POLR1AO95602 1720 aaPredicted RBP25.61■■□□□ 1.69
CLN3-203ENST00000357806 UBR1Q8IWV7 1749 aa25.59■■□□□ 1.69
CLN3-203ENST00000357806 UGGT1Q9NYU2 1555 aa25.58■■□□□ 1.69
CLN3-203ENST00000357806 SYNMO15061 1565 aa25.58■■□□□ 1.68
CLN3-203ENST00000357806 PLA2R1Q13018 1463 aa25.57■■□□□ 1.68
CLN3-203ENST00000357806 NUP155O75694 1391 aa25.56■■□□□ 1.68
CLN3-203ENST00000357806 KDM5AP29375 1690 aaKnown RBP25.56■■□□□ 1.68
CLN3-203ENST00000357806 PIK3C2BO00750 1634 aa25.56■■□□□ 1.68
CLN3-203ENST00000357806 SPHKAPQ2M3C7 1700 aa25.52■■□□□ 1.68
CLN3-203ENST00000357806 NOS1P29475 1434 aa25.52■■□□□ 1.68
CLN3-203ENST00000357806 MYO5BQ9ULV0 1848 aa25.48■■□□□ 1.67
CLN3-203ENST00000357806 THEMISQ8N1K5 641 aaPredicted RBP25.45■■□□□ 1.66
CLN3-203ENST00000357806 DMRT2Q9Y5R5 561 aa25.45■■□□□ 1.66
CLN3-203ENST00000357806 ADGRB3O60242 1522 aa25.45■■□□□ 1.66
CLN3-203ENST00000357806 PTPRTO14522 1441 aa25.44■■□□□ 1.66
CLN3-203ENST00000357806 NEURL4Q96JN8 1562 aa25.43■■□□□ 1.66
CLN3-203ENST00000357806 PKD2Q13563 968 aa25.41■■□□□ 1.66
CLN3-203ENST00000357806 TRIM52Q96A61 297 aa25.4■■□□□ 1.66
CLN3-203ENST00000357806 SETD5Q9C0A6 1442 aa25.4■■□□□ 1.66
CLN3-203ENST00000357806 SLIT1O75093 1534 aa25.4■■□□□ 1.66
CLN3-203ENST00000357806 SLC52A1Q9NWF4 448 aa25.39■■□□□ 1.65
CLN3-203ENST00000357806 NCKAP5LQ9HCH0 1330 aa25.39■■□□□ 1.65
CLN3-203ENST00000357806 IQGAP1P46940 1657 aa25.38■■□□□ 1.65
CLN3-203ENST00000357806 TMEM131LA2VDJ0 1609 aa25.38■■□□□ 1.65
CLN3-203ENST00000357806 IDI1Q13907 227 aa25.37■■□□□ 1.65
CLN3-203ENST00000357806 ARHGAP23Q9P227 1491 aa25.36■■□□□ 1.65
CLN3-203ENST00000357806 STAG3Q9UJ98 1225 aa25.35■■□□□ 1.65
CLN3-203ENST00000357806 TRPM2O94759 1503 aa25.35■■□□□ 1.65
CLN3-203ENST00000357806 KIF1BO60333 1816 aa25.35■■□□□ 1.65
CLN3-203ENST00000357806 ACIN1Q9UKV3 1341 aaKnown RBP25.34■■□□□ 1.65
CLN3-203ENST00000357806 ANKLE2Q86XL3 938 aa25.34■■□□□ 1.65
CLN3-203ENST00000357806 MED14O60244 1454 aa25.33■■□□□ 1.65
CLN3-203ENST00000357806 SCAF11Q99590 1463 aaKnown RBP25.32■■□□□ 1.64
CLN3-203ENST00000357806 CLTCL1P53675 1640 aa25.32■■□□□ 1.64
CLN3-203ENST00000357806 RAB3GAP2Q9H2M9 1393 aa25.31■■□□□ 1.64
CLN3-203ENST00000357806 SLC4A1APQ9BWU0 796 aaKnown RBP25.31■■□□□ 1.64
CLN3-203ENST00000357806 TMEM2Q9UHN6 1383 aa25.3■■□□□ 1.64
CLN3-203ENST00000357806 NPHP4O75161 1426 aaPredicted RBP25.28■■□□□ 1.64
CLN3-203ENST00000357806 EID1Q9Y6B2 187 aa25.24■■□□□ 1.63
CLN3-203ENST00000357806 LTBP4Q8N2S1 1624 aa25.22■■□□□ 1.63
CLN3-203ENST00000357806 TXNDC2Q86VQ3 553 aa25.21■■□□□ 1.63
CLN3-203ENST00000357806 CHGAP10645 457 aaKnown RBP25.21■■□□□ 1.63
CLN3-203ENST00000357806 MPHOSPH9Q99550 1183 aa25.21■■□□□ 1.63
CLN3-203ENST00000357806 ZFYVE9O95405 1425 aa25.21■■□□□ 1.63
CLN3-203ENST00000357806 LTKP29376 864 aa25.2■■□□□ 1.62
CLN3-203ENST00000357806 RIMS2Q9UQ26 1411 aa25.18■■□□□ 1.62
CLN3-203ENST00000357806 HRCP23327 699 aa25.15■■□□□ 1.62
CLN3-203ENST00000357806 STRCP1A6NGW2 1772 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms