RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 NISCHQ9Y2I1 1504 aa41.28■■■■■ 4.2
CLN3-203ENST00000357806 CCDC180Q9P1Z9 1646 aa36.85■■■■□ 3.49
CLN3-203ENST00000357806 ABCC9O60706 1549 aa35.84■■■■□ 3.33
CLN3-203ENST00000357806 RB1CC1Q8TDY2 1594 aa34.59■■■■□ 3.13
CLN3-203ENST00000357806 NACADO15069 1562 aa34.54■■■■□ 3.12
CLN3-203ENST00000357806 ZCCHC6Q5VYS8 1495 aaKnown RBP34.42■■■■□ 3.1
CLN3-203ENST00000357806 DCAF8L2P0C7V8 631 aa34.33■■■■□ 3.09
CLN3-203ENST00000357806 MYO15BQ96JP2 1530 aa34.33■■■■□ 3.09
CLN3-203ENST00000357806 DCAF1Q9Y4B6 1507 aa34.2■■■■□ 3.07
CLN3-203ENST00000357806 UNC13AQ9UPW8 1703 aa33.96■■■■□ 3.03
CLN3-203ENST00000357806 SCRIBQ14160 1630 aa33.55■■■□□ 2.96
CLN3-203ENST00000357806 BICRAQ9NZM4 1560 aa33.51■■■□□ 2.96
CLN3-203ENST00000357806 PABPN1Q86U42 306 aaKnown RBP eCLIP33.38■■■□□ 2.93
CLN3-203ENST00000357806 SHROOM4Q9ULL8 1493 aa33.2■■■□□ 2.91
CLN3-203ENST00000357806 DNAJC5BQ9UF47 199 aa32.72■■■□□ 2.83
CLN3-203ENST00000357806 EIF4G1Q04637 1599 aaKnown RBP32.64■■■□□ 2.82
CLN3-203ENST00000357806 CC2D2AQ9P2K1 1620 aa32.5■■■□□ 2.79
CLN3-203ENST00000357806 CECR2Q9BXF3 1484 aa32.2■■■□□ 2.75
CLN3-203ENST00000357806 SMARCA4P51532 1647 aa32.1■■■□□ 2.73
CLN3-203ENST00000357806 BAZ1AQ9NRL2 1556 aaPredicted RBP32.04■■■□□ 2.72
CLN3-203ENST00000357806 SMARCA2P51531 1590 aa31.86■■■□□ 2.69
CLN3-203ENST00000357806 ATAD2BQ9ULI0 1458 aa31.82■■■□□ 2.68
CLN3-203ENST00000357806 MROH2BQ7Z745 1585 aa31.8■■■□□ 2.68
CLN3-203ENST00000357806 NCAPD3P42695 1498 aa31.79■■■□□ 2.68
CLN3-203ENST00000357806 PEG3Q9GZU2 1588 aa31.78■■■□□ 2.68
CLN3-203ENST00000357806 HMGXB3Q12766 1538 aa31.73■■■□□ 2.67
CLN3-203ENST00000357806 BAZ1BQ9UIG0 1483 aaKnown RBP31.6■■■□□ 2.65
CLN3-203ENST00000357806 WIZO95785 1651 aa31.54■■■□□ 2.64
CLN3-203ENST00000357806 RSF1Q96T23 1441 aaPredicted RBP31.4■■■□□ 2.62
CLN3-203ENST00000357806 TOP2AP11388 1531 aaKnown RBP31.19■■■□□ 2.58
CLN3-203ENST00000357806 LAMC3Q9Y6N6 1575 aa31.06■■■□□ 2.56
CLN3-203ENST00000357806 NESP48681 1621 aa31.02■■■□□ 2.56
CLN3-203ENST00000357806 ERCC6Q03468 1493 aa30.92■■■□□ 2.54
CLN3-203ENST00000357806 CADPSQ9ULU8 1353 aa30.84■■■□□ 2.53
CLN3-203ENST00000357806 KIF21AQ7Z4S6 1674 aa30.83■■■□□ 2.53
CLN3-203ENST00000357806 PRDM2Q13029 1718 aa30.76■■■□□ 2.52
CLN3-203ENST00000357806 PDS5BQ9NTI5 1447 aa30.74■■■□□ 2.51
CLN3-203ENST00000357806 CCDC88BA6NC98 1476 aa30.74■■■□□ 2.51
CLN3-203ENST00000357806 CFTRP13569 1480 aa30.7■■■□□ 2.51
CLN3-203ENST00000357806 THOC2Q8NI27 1593 aaKnown RBP30.67■■■□□ 2.5
CLN3-203ENST00000357806 CUX2O14529 1486 aa30.6■■■□□ 2.49
CLN3-203ENST00000357806 SUPT5HO00267 1087 aaKnown RBP30.57■■■□□ 2.48
CLN3-203ENST00000357806 FANCD2Q9BXW9 1451 aa30.53■■■□□ 2.48
CLN3-203ENST00000357806 CEP164Q9UPV0 1460 aa30.53■■■□□ 2.48
CLN3-203ENST00000357806 MRC2Q9UBG0 1479 aa30.46■■■□□ 2.47
CLN3-203ENST00000357806 WDR62O43379 1518 aa30.4■■■□□ 2.46
CLN3-203ENST00000357806 URB2Q14146 1524 aaKnown RBP30.22■■■□□ 2.43
CLN3-203ENST00000357806 ABCC8Q09428 1581 aa30.08■■■□□ 2.41
CLN3-203ENST00000357806 DNMBPQ6XZF7 1577 aa30.08■■■□□ 2.41
CLN3-203ENST00000357806 TOPBP1Q92547 1522 aa30.06■■■□□ 2.4
CLN3-203ENST00000357806 IFT140Q96RY7 1462 aa29.86■■■□□ 2.37
CLN3-203ENST00000357806 CUX1P39880 1505 aa29.85■■■□□ 2.37
CLN3-203ENST00000357806 POLA1P09884 1462 aaPredicted RBP29.81■■■□□ 2.36
CLN3-203ENST00000357806 TARBP1Q13395 1621 aaKnown RBP29.79■■■□□ 2.36
CLN3-203ENST00000357806 FGD5Q6ZNL6 1462 aa29.75■■■□□ 2.35
CLN3-203ENST00000357806 BIVM-ERCC5R4GMW8 1640 aa29.71■■■□□ 2.35
CLN3-203ENST00000357806 EIF4G3O43432 1585 aaKnown RBP29.7■■■□□ 2.35
CLN3-203ENST00000357806 ZNF608Q9ULD9 1512 aaPredicted RBP29.69■■■□□ 2.34
CLN3-203ENST00000357806 TOP2BQ02880 1626 aa29.66■■■□□ 2.34
CLN3-203ENST00000357806 WDR97A6NE52 1622 aa29.65■■■□□ 2.34
CLN3-203ENST00000357806 WRNQ14191 1432 aaPredicted RBP eCLIP29.65■■■□□ 2.34
CLN3-203ENST00000357806 SYNJ1O43426 1573 aa29.63■■■□□ 2.33
CLN3-203ENST00000357806 RAD54L2Q9Y4B4 1467 aa29.63■■■□□ 2.33
CLN3-203ENST00000357806 SOGA1O94964 1423 aa29.63■■■□□ 2.33
CLN3-203ENST00000357806 AQRO60306 1485 aaKnown RBP eCLIP29.5■■■□□ 2.316e-6■■■■□ 25.1
CLN3-203ENST00000357806 DNAJC5Q9H3Z4 198 aa29.48■■■□□ 2.31
CLN3-203ENST00000357806 ABCA10Q8WWZ4 1543 aa29.46■■■□□ 2.31
CLN3-203ENST00000357806 PBRM1Q86U86 1689 aa29.45■■■□□ 2.31
CLN3-203ENST00000357806 TDRD9Q8NDG6 1382 aaKnown RBP29.42■■■□□ 2.3
CLN3-203ENST00000357806 ABCA5Q8WWZ7 1642 aa29.42■■■□□ 2.3
CLN3-203ENST00000357806 CHD1O14646 1710 aa29.38■■■□□ 2.29
CLN3-203ENST00000357806 GRIN2BQ13224 1484 aa29.33■■■□□ 2.29
CLN3-203ENST00000357806 GAPVD1Q14C86 1478 aa29.33■■■□□ 2.29
CLN3-203ENST00000357806 SNAPC4Q5SXM2 1469 aa29.29■■■□□ 2.28
CLN3-203ENST00000357806 MAGI1Q96QZ7 1491 aaPredicted RBP29.28■■■□□ 2.28
CLN3-203ENST00000357806 OSCARQ8IYS5 282 aa29.22■■■□□ 2.27
CLN3-203ENST00000357806 SYNJ2O15056 1496 aa29.15■■■□□ 2.26
CLN3-203ENST00000357806 ERICH3Q5RHP9 1530 aa29.14■■■□□ 2.26
CLN3-203ENST00000357806 ADAMTS12P58397 1594 aa29.12■■■□□ 2.25
CLN3-203ENST00000357806 FBLN2P98095 1184 aa29.1■■■□□ 2.25
CLN3-203ENST00000357806 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
CLN3-203ENST00000357806 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
CLN3-203ENST00000357806 FHAD1B1AJZ9 1412 aa28.98■■■□□ 2.23
CLN3-203ENST00000357806 CUL7Q14999 1698 aa28.97■■■□□ 2.23
CLN3-203ENST00000357806 GRIN2AQ12879 1464 aa28.97■■■□□ 2.23
CLN3-203ENST00000357806 CLASP1Q7Z460 1538 aa28.96■■■□□ 2.23
CLN3-203ENST00000357806 RIMBP3CA6NJZ7 1639 aa28.91■■■□□ 2.22
CLN3-203ENST00000357806 RIMBP3BA6NNM3 1639 aa28.91■■■□□ 2.22
CLN3-203ENST00000357806 RIMBP3Q9UFD9 1639 aa28.91■■■□□ 2.22
CLN3-203ENST00000357806 TRIM41Q8WV44 630 aa28.89■■■□□ 2.22
CLN3-203ENST00000357806 CEP170Q5SW79 1584 aa28.86■■■□□ 2.21
CLN3-203ENST00000357806 ARHGEF11O15085 1522 aa28.86■■■□□ 2.21
CLN3-203ENST00000357806 IGF1RP08069 1367 aa28.82■■■□□ 2.2
CLN3-203ENST00000357806 NUP160Q12769 1436 aa28.81■■■□□ 2.2
CLN3-203ENST00000357806 RUSC2Q8N2Y8 1516 aa28.73■■■□□ 2.19
CLN3-203ENST00000357806 SHROOM2Q13796 1616 aa28.69■■■□□ 2.18
CLN3-203ENST00000357806 CARMIL1Q5VZK9 1371 aa28.69■■■□□ 2.18
CLN3-203ENST00000357806 ARAP1Q96P48 1450 aa28.6■■■□□ 2.17
CLN3-203ENST00000357806 RAPGEF2Q9Y4G8 1499 aa28.57■■■□□ 2.16
CLN3-203ENST00000357806 KIAA0586Q9BVV6 1533 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms