RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CEP170BQ9Y4F5 1589 aaPredicted RBP30.56■■■□□ 2.48
LIME1-201ENST00000309546 NCOA1Q15788 1441 aa30.56■■■□□ 2.48
LIME1-201ENST00000309546 FAM135AQ9P2D6 1515 aa30.55■■■□□ 2.48
LIME1-201ENST00000309546 CROCC2H7BZ55 1655 aa30.54■■■□□ 2.48
LIME1-201ENST00000309546 RNF17Q9BXT8 1623 aaKnown RBP30.51■■■□□ 2.48
LIME1-201ENST00000309546 WASHC2CQ9Y4E1 1318 aa30.51■■■□□ 2.48
LIME1-201ENST00000309546 PTPRTO14522 1441 aa30.51■■■□□ 2.47
LIME1-201ENST00000309546 CERKQ8TCT0 537 aa30.51■■■□□ 2.47
LIME1-201ENST00000309546 EIF2AK4Q9P2K8 1649 aaKnown RBP30.51■■■□□ 2.47
LIME1-201ENST00000309546 FGD6Q6ZV73 1430 aa30.48■■■□□ 2.47
LIME1-201ENST00000309546 PZPP20742 1482 aa30.48■■■□□ 2.47
LIME1-201ENST00000309546 SHANK2Q9UPX8 1470 aa30.45■■■□□ 2.47
LIME1-201ENST00000309546 DNMT1P26358 1616 aaKnown RBP30.45■■■□□ 2.47
LIME1-201ENST00000309546 FBXO31Q5XUX0 539 aaPredicted RBP30.45■■■□□ 2.47
LIME1-201ENST00000309546 ABCC5O15440 1437 aa30.45■■■□□ 2.46
LIME1-201ENST00000309546 TNRQ92752 1358 aa30.44■■■□□ 2.46
LIME1-201ENST00000309546 DUOX2Q9NRD8 1548 aa30.44■■■□□ 2.46
LIME1-201ENST00000309546 ZC3H13Q5T200 1668 aaKnown RBP30.44■■■□□ 2.46
LIME1-201ENST00000309546 A2ML1A8K2U0 1454 aa30.44■■■□□ 2.46
LIME1-201ENST00000309546 TCOF1Q13428 1488 aaKnown RBP30.44■■■□□ 2.46
LIME1-201ENST00000309546 DAPK1P53355 1430 aa30.42■■■□□ 2.46
LIME1-201ENST00000309546 PLA2R1Q13018 1463 aa30.42■■■□□ 2.46
LIME1-201ENST00000309546 NCKAP5LQ9HCH0 1330 aa30.42■■■□□ 2.46
LIME1-201ENST00000309546 ABCC3O15438 1527 aa30.41■■■□□ 2.46
LIME1-201ENST00000309546 KIF15Q9NS87 1388 aa30.41■■■□□ 2.46
LIME1-201ENST00000309546 MROH1Q8NDA8 1641 aa30.4■■■□□ 2.46
LIME1-201ENST00000309546 CEP152O94986 1710 aa30.4■■■□□ 2.46
LIME1-201ENST00000309546 RRP7BPQ9NSQ0 103 aa30.36■■■□□ 2.45
LIME1-201ENST00000309546 PKD2Q13563 968 aa30.34■■■□□ 2.45
LIME1-201ENST00000309546 ERBINQ96RT1 1412 aa30.33■■■□□ 2.45
LIME1-201ENST00000309546 LTBP4Q8N2S1 1624 aa30.32■■■□□ 2.44
LIME1-201ENST00000309546 POLR1AO95602 1720 aaPredicted RBP30.31■■■□□ 2.44
LIME1-201ENST00000309546 CHIC2Q9UKJ5 165 aa30.31■■■□□ 2.44
LIME1-201ENST00000309546 PRDM15P57071 1507 aaPredicted RBP30.3■■■□□ 2.44
LIME1-201ENST00000309546 CFAP65Q6ZU64 1925 aaKnown RBP30.3■■■□□ 2.44
LIME1-201ENST00000309546 NLRP1Q9C000 1473 aa30.29■■■□□ 2.44
LIME1-201ENST00000309546 SPATA31D1Q6ZQQ2 1576 aa30.28■■■□□ 2.44
LIME1-201ENST00000309546 FAM50AQ14320 339 aaKnown RBP30.28■■■□□ 2.44
LIME1-201ENST00000309546 ANKRD30AQ9BXX3 1397 aa30.28■■■□□ 2.44
LIME1-201ENST00000309546 ERVK-7P63135 1459 aa30.26■■■□□ 2.44
LIME1-201ENST00000309546 UGGT1Q9NYU2 1555 aa30.26■■■□□ 2.43
LIME1-201ENST00000309546 DEPDC5O75140 1603 aa30.25■■■□□ 2.43
LIME1-201ENST00000309546 ZNF335Q9H4Z2 1342 aaPredicted RBP30.23■■■□□ 2.43
LIME1-201ENST00000309546 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.23■■■□□ 2.43
LIME1-201ENST00000309546 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.22■■■□□ 2.43
LIME1-201ENST00000309546 NEURL4Q96JN8 1562 aa30.22■■■□□ 2.43
LIME1-201ENST00000309546 THEMISQ8N1K5 641 aaPredicted RBP30.19■■■□□ 2.42
LIME1-201ENST00000309546 KANK1Q14678 1352 aa30.18■■■□□ 2.42
LIME1-201ENST00000309546 ADGRL2O95490 1459 aa30.18■■■□□ 2.42
LIME1-201ENST00000309546 IQSEC2Q5JU85 1478 aa30.16■■■□□ 2.42
LIME1-201ENST00000309546 ANKLE2Q86XL3 938 aa30.14■■■□□ 2.42
LIME1-201ENST00000309546 ARHGAP31Q2M1Z3 1444 aa30.13■■■□□ 2.41
LIME1-201ENST00000309546 UBR1Q8IWV7 1749 aa30.12■■■□□ 2.41
LIME1-201ENST00000309546 VWDEQ8N2E2 1590 aa30.09■■■□□ 2.41
LIME1-201ENST00000309546 NPHP4O75161 1426 aaPredicted RBP30.08■■■□□ 2.41
LIME1-201ENST00000309546 PPARGC1BQ86YN6 1023 aaKnown RBP30.08■■■□□ 2.41
LIME1-201ENST00000309546 IQGAP1P46940 1657 aa30.07■■■□□ 2.41
LIME1-201ENST00000309546 LMTK2Q8IWU2 1503 aa30.07■■■□□ 2.4
LIME1-201ENST00000309546 ANKRD50Q9ULJ7 1429 aa30.05■■■□□ 2.4
LIME1-201ENST00000309546 MED14O60244 1454 aa30.05■■■□□ 2.4
LIME1-201ENST00000309546 PIK3C2BO00750 1634 aa30.03■■■□□ 2.4
LIME1-201ENST00000309546 EFCAB6Q5THR3 1501 aa30.02■■■□□ 2.4
LIME1-201ENST00000309546 CPS1P31327 1500 aa30■■■□□ 2.39
LIME1-201ENST00000309546 UBAP1LF5GYI3 381 aa29.97■■■□□ 2.39
LIME1-201ENST00000309546 SYNMO15061 1565 aa29.97■■■□□ 2.39
LIME1-201ENST00000309546 SCAF11Q99590 1463 aaKnown RBP29.96■■■□□ 2.39
LIME1-201ENST00000309546 ITGAEP38570 1179 aa29.95■■■□□ 2.39
LIME1-201ENST00000309546 STAG3Q9UJ98 1225 aa29.95■■■□□ 2.39
LIME1-201ENST00000309546 SLIT1O75093 1534 aa29.95■■■□□ 2.38
LIME1-201ENST00000309546 UNC13BO14795 1591 aa29.94■■■□□ 2.38
LIME1-201ENST00000309546 TET3O43151 1660 aa29.93■■■□□ 2.38
LIME1-201ENST00000309546 ARHGAP23Q9P227 1491 aa29.93■■■□□ 2.38
LIME1-201ENST00000309546 ROCK1Q13464 1354 aa29.91■■■□□ 2.38
LIME1-201ENST00000309546 NOS1P29475 1434 aa29.9■■■□□ 2.38
LIME1-201ENST00000309546 TXNDC2Q86VQ3 553 aa29.9■■■□□ 2.38
LIME1-201ENST00000309546 KDM5AP29375 1690 aaKnown RBP29.9■■■□□ 2.38
LIME1-201ENST00000309546 GCC2Q8IWJ2 1684 aa29.89■■■□□ 2.38
LIME1-201ENST00000309546 IDI1Q13907 227 aa29.89■■■□□ 2.38
LIME1-201ENST00000309546 STRCP1A6NGW2 1772 aa29.89■■■□□ 2.38
LIME1-201ENST00000309546 LTKP29376 864 aa29.88■■■□□ 2.37
LIME1-201ENST00000309546 RPRD2Q5VT52 1461 aaKnown RBP29.87■■■□□ 2.37
LIME1-201ENST00000309546 EID1Q9Y6B2 187 aa29.87■■■□□ 2.37
LIME1-201ENST00000309546 TMEM2Q9UHN6 1383 aa29.86■■■□□ 2.37
LIME1-201ENST00000309546 ADGRB3O60242 1522 aa29.86■■■□□ 2.37
LIME1-201ENST00000309546 IQGAP3Q86VI3 1631 aa29.82■■■□□ 2.36
LIME1-201ENST00000309546 SCAF1Q9H7N4 1312 aaKnown RBP29.81■■■□□ 2.36
LIME1-201ENST00000309546 E9PCH4 1651 aa29.8■■■□□ 2.36
LIME1-201ENST00000309546 SLC52A1Q9NWF4 448 aa29.79■■■□□ 2.36
LIME1-201ENST00000309546 MYO5BQ9ULV0 1848 aa29.79■■■□□ 2.36
LIME1-201ENST00000309546 TOM1O60784 492 aa29.77■■■□□ 2.36
LIME1-201ENST00000309546 PIP4K2BP78356 416 aa29.77■■■□□ 2.36
LIME1-201ENST00000309546 LRRC7Q96NW7 1537 aa29.76■■■□□ 2.36
LIME1-201ENST00000309546 NUP155O75694 1391 aa29.75■■■□□ 2.35
LIME1-201ENST00000309546 RRBP1Q9P2E9 1410 aaKnown RBP29.74■■■□□ 2.35
LIME1-201ENST00000309546 DISP3Q9P2K9 1392 aa29.72■■■□□ 2.35
LIME1-201ENST00000309546 TMEM131LA2VDJ0 1609 aa29.7■■■□□ 2.34
LIME1-201ENST00000309546 ALKQ9UM73 1620 aa29.67■■■□□ 2.34
LIME1-201ENST00000309546 CHGAP10645 457 aaKnown RBP29.67■■■□□ 2.34
LIME1-201ENST00000309546 BCANQ96GW7 911 aa29.66■■■□□ 2.34
LIME1-201ENST00000309546 SLC26A8Q96RN1 970 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms