RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeastyeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS38YLR360W OPI3P05375 206 aa2.78□□□□□ -1.96
VPS38YLR360W SSC1P0CS90 654 aaKnown RBP2.78□□□□□ -1.96
VPS38YLR360W PHO91P27514 894 aa2.78□□□□□ -1.96
VPS38YLR360W LTV1P34078 463 aa2.78□□□□□ -1.96
VPS38YLR360W ATM1P40416 690 aa2.78□□□□□ -1.96
VPS38YLR360W CLD1P53264 445 aa2.78□□□□□ -1.96
VPS38YLR360W YDR341CQ05506 607 aaKnown RBP2.78□□□□□ -1.96
VPS38YLR360W PSK1P31374 1356 aa2.77□□□□□ -1.97
VPS38YLR360W COX4P04037 155 aa2.77□□□□□ -1.97
VPS38YLR360W CDC50P25656 391 aa2.77□□□□□ -1.97
VPS38YLR360W NRP1P32770 719 aaKnown RBP RIP-Chip data2.77□□□□□ -1.97not detected
VPS38YLR360W RAD5P32849 1169 aaPredicted RBP2.77□□□□□ -1.97
VPS38YLR360W ECM8P38246 354 aa2.77□□□□□ -1.97
VPS38YLR360W PTI1P39927 425 aaPredicted RBP2.77□□□□□ -1.97
VPS38YLR360W YER186CP40101 306 aa2.77□□□□□ -1.97
VPS38YLR360W TRM112P53738 135 aaPredicted RBP2.77□□□□□ -1.97
VPS38YLR360W MRPS16Q02608 121 aa2.77□□□□□ -1.97
VPS38YLR360W ECM7Q06200 448 aa2.77□□□□□ -1.97
VPS38YLR360W YPR091CQ06833 770 aa2.77□□□□□ -1.97
VPS38YLR360W NSE1Q07913 336 aa2.77□□□□□ -1.97
VPS38YLR360W FCY22Q12119 530 aa2.77□□□□□ -1.97
VPS38YLR360W YDL012CQ12489 107 aa2.77□□□□□ -1.97
VPS38YLR360W TPK3P05986 398 aa2.76□□□□□ -1.97
VPS38YLR360W VMA8P32610 256 aaKnown RBP2.76□□□□□ -1.97
VPS38YLR360W YSC83P32792 385 aa2.76□□□□□ -1.97
VPS38YLR360W SKT5P34226 696 aa2.76□□□□□ -1.97
VPS38YLR360W ANR2P36090 516 aaPredicted RBP2.76□□□□□ -1.97
VPS38YLR360W QDR3P38227 689 aa2.76□□□□□ -1.97
VPS38YLR360W OM14P38325 134 aa2.76□□□□□ -1.97
VPS38YLR360W BUD27P43573 796 aaKnown RBP RIP-Chip data2.76□□□□□ -1.97not detected
VPS38YLR360W STE24P47154 453 aa2.76□□□□□ -1.97
VPS38YLR360W MKC7P53379 596 aa2.76□□□□□ -1.97
VPS38YLR360W MFG1Q07684 458 aa2.76□□□□□ -1.97
VPS38YLR360W RNH203Q12338 110 aa2.76□□□□□ -1.97
VPS38YLR360W CCH1P50077 2039 aa2.76□□□□□ -1.97
VPS38YLR360W PAB1P04147 577 aaKnown RBP RIP-Chip data2.75□□□□□ -1.97not detected
VPS38YLR360W PXA2P34230 853 aa2.75□□□□□ -1.97
VPS38YLR360W DOA1P36037 715 aa2.75□□□□□ -1.97
VPS38YLR360W GPX2P38143 162 aa2.75□□□□□ -1.97
VPS38YLR360W PFS1P38872 237 aa2.75□□□□□ -1.97
VPS38YLR360W CIK1Q01649 594 aa2.75□□□□□ -1.97
VPS38YLR360W VHS1Q03785 461 aa2.75□□□□□ -1.97
VPS38YLR360W YOP1Q12402 180 aa2.75□□□□□ -1.97
VPS38YLR360W MCR1P36060 302 aaKnown RBP2.74□□□□□ -1.97
VPS38YLR360W GEP4P38812 185 aa2.74□□□□□ -1.97
VPS38YLR360W TOS2P50078 622 aa2.74□□□□□ -1.97
VPS38YLR360W ASA1Q06822 443 aa2.74□□□□□ -1.97
VPS38YLR360W SPE3Q12074 293 aaKnown RBP2.74□□□□□ -1.97
VPS38YLR360W FAB1P34756 2278 aa2.74□□□□□ -1.97
VPS38YLR360W RPL12AP0CX53 165 aaKnown RBP2.73□□□□□ -1.97
VPS38YLR360W RPL12BP0CX54 165 aa2.73□□□□□ -1.97
VPS38YLR360W ARF1P11076 181 aaKnown RBP2.73□□□□□ -1.97
VPS38YLR360W GPI18P38211 433 aa2.73□□□□□ -1.97
VPS38YLR360W TIM17P39515 158 aa2.73□□□□□ -1.97
VPS38YLR360W PAC11P40960 533 aa2.73□□□□□ -1.97
VPS38YLR360W YML6P51998 286 aa2.73□□□□□ -1.97
VPS38YLR360W PMT5P52867 743 aa2.73□□□□□ -1.97
VPS38YLR360W DNL4Q08387 944 aaPredicted RBP2.73□□□□□ -1.97
VPS38YLR360W PRB1P09232 635 aa2.72□□□□□ -1.97
VPS38YLR360W ZRC1P20107 442 aa2.72□□□□□ -1.97
VPS38YLR360W TIR2P33890 251 aa2.72□□□□□ -1.97
VPS38YLR360W SEO1P39709 593 aa2.72□□□□□ -1.97
VPS38YLR360W LCB2P40970 561 aa2.72□□□□□ -1.97
VPS38YLR360W IGD1P43598 195 aa2.72□□□□□ -1.97
VPS38YLR360W SKI8Q02793 397 aaPredicted RBP2.72□□□□□ -1.97
VPS38YLR360W PRP3Q03338 469 aaPredicted RBP2.72□□□□□ -1.97
VPS38YLR360W URC2Q04411 772 aa2.72□□□□□ -1.97
VPS38YLR360W YDL114WQ07530 308 aa2.72□□□□□ -1.97
VPS38YLR360W YPQ1Q12010 308 aa2.72□□□□□ -1.97
VPS38YLR360W RPN5Q12250 445 aaKnown RBP2.72□□□□□ -1.97
VPS38YLR360W YDL199CQ12407 687 aa2.72□□□□□ -1.97
VPS38YLR360W FOL3Q12676 427 aaPredicted RBP2.72□□□□□ -1.97
VPS38YLR360W KAP104P38217 918 aaKnown RBP2.71□□□□□ -1.98
VPS38YLR360W MNL1P38888 796 aa2.71□□□□□ -1.98
VPS38YLR360W YGL262WP53054 175 aa2.71□□□□□ -1.98
VPS38YLR360W YPS5P53057 165 aa2.71□□□□□ -1.98
VPS38YLR360W RRN9P53437 365 aa2.71□□□□□ -1.98
VPS38YLR360W APJ1P53940 528 aa2.71□□□□□ -1.98
VPS38YLR360W MEH1Q02205 184 aa2.71□□□□□ -1.98
VPS38YLR360W RNY1Q02933 434 aaKnown RBP2.71□□□□□ -1.98
VPS38YLR360W YDR541CQ03049 344 aa2.71□□□□□ -1.98
VPS38YLR360W PCL9Q12477 304 aa2.71□□□□□ -1.98
VPS38YLR360W RPL1AP0CX43 217 aaKnown RBP2.7□□□□□ -1.98
VPS38YLR360W RPL1BP0CX44 217 aaKnown RBP2.7□□□□□ -1.98
VPS38YLR360W MRPS9P38120 278 aa2.7□□□□□ -1.98
VPS38YLR360W PFF1P38244 976 aa2.7□□□□□ -1.98
VPS38YLR360W EFM4P40516 257 aa2.7□□□□□ -1.98
VPS38YLR360W AIP1P46680 615 aaKnown RBP2.7□□□□□ -1.98
VPS38YLR360W YJL055WP47044 245 aa2.7□□□□□ -1.98
VPS38YLR360W KTR6P54070 446 aa2.7□□□□□ -1.98
VPS38YLR360W ERO1Q03103 563 aa2.7□□□□□ -1.98
VPS38YLR360W ECM11Q04110 302 aa2.7□□□□□ -1.98
VPS38YLR360W MCH1Q07376 486 aa2.7□□□□□ -1.98
VPS38YLR360W LDS2Q08218 356 aa2.7□□□□□ -1.98
VPS38YLR360W YBL111CQ3E7Y5 667 aa2.7□□□□□ -1.98
VPS38YLR360W ADH1P00330 348 aaKnown RBP2.69□□□□□ -1.98
VPS38YLR360W CBP6P07253 162 aaPredicted RBP2.69□□□□□ -1.98
VPS38YLR360W MNE1P24720 663 aa2.69□□□□□ -1.98
VPS38YLR360W FUN26P31381 517 aa2.69□□□□□ -1.98
VPS38YLR360W DEP1P31385 405 aa2.69□□□□□ -1.98
Retrieved 100 of 5,963 RNA–protein pairs in 66.7 ms