RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeastyeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS38YLR360W MTC1P47018 478 aaKnown RBP13.44□□□□□ -0.26
VPS38YLR360W DRS1P32892 752 aaKnown RBP13.01□□□□□ -0.33
VPS38YLR360W FAP1P53971 965 aa12.33□□□□□ -0.44
VPS38YLR360W PRY3P47033 881 aa11.59□□□□□ -0.55
VPS38YLR360W PRI1P10363 409 aa11.43□□□□□ -0.58
VPS38YLR360W AAD16Q02895 342 aa11.38□□□□□ -0.59
VPS38YLR360W ISW2Q08773 1120 aa11.16□□□□□ -0.62
VPS38YLR360W DIP2Q12220 943 aaPredicted RBP11.16□□□□□ -0.62
VPS38YLR360W BFR2Q06631 534 aaKnown RBP11.13□□□□□ -0.63
VPS38YLR360W RPG1P38249 964 aaKnown RBP11.09□□□□□ -0.63
VPS38YLR360W YCK3P39962 524 aa10.96□□□□□ -0.65
VPS38YLR360W AVT3P36062 692 aa10.89□□□□□ -0.67
VPS38YLR360W TSR3Q12094 313 aaKnown RBP10.83□□□□□ -0.68
VPS38YLR360W HAA1Q12753 694 aaKnown RBP10.82□□□□□ -0.68
VPS38YLR360W RSE1Q04693 1361 aaKnown RBP10.62□□□□□ -0.71
VPS38YLR360W MRPL32P25348 183 aa10.36□□□□□ -0.75
VPS38YLR360W RPL17AP05740 184 aaKnown RBP10.3□□□□□ -0.76
VPS38YLR360W RPL17BP46990 184 aaKnown RBP10.3□□□□□ -0.76
VPS38YLR360W REB1P21538 810 aa10.26□□□□□ -0.77
VPS38YLR360W TFA1P36100 482 aa10.2□□□□□ -0.78
VPS38YLR360W YGL015CP33199 130 aa9.97□□□□□ -0.81
VPS38YLR360W CDC27P38042 758 aa9.85□□□□□ -0.83
VPS38YLR360W SPT21P35209 758 aa9.83□□□□□ -0.84
VPS38YLR360W YKR023WP36119 530 aaKnown RBP9.78□□□□□ -0.84
VPS38YLR360W HOP09932 586 aa9.59□□□□□ -0.87
VPS38YLR360W RIM101P33400 625 aa9.59□□□□□ -0.87
VPS38YLR360W DCD1P06773 312 aa9.58□□□□□ -0.88
VPS38YLR360W TFC8Q12308 588 aa9.56□□□□□ -0.88
VPS38YLR360W MAP2P38174 421 aaKnown RBP9.56□□□□□ -0.88
VPS38YLR360W UBP10P53874 792 aaPredicted RBP9.54□□□□□ -0.88
VPS38YLR360W SCY1P53009 804 aa9.33□□□□□ -0.92
VPS38YLR360W OXP1P28273 1286 aa9.31□□□□□ -0.92
VPS38YLR360W BUD31P25337 157 aaPredicted RBP9.28□□□□□ -0.92
VPS38YLR360W BCH2P36122 765 aa9.25□□□□□ -0.93
VPS38YLR360W YIL055CP40523 627 aaKnown RBP9.25□□□□□ -0.93
VPS38YLR360W SLX5P32828 619 aaKnown RBP9.2□□□□□ -0.94
VPS38YLR360W PTP3P40048 928 aa9.2□□□□□ -0.94
VPS38YLR360W YAH1Q12184 172 aaKnown RBP9.2□□□□□ -0.94
VPS38YLR360W TIF4632P39936 914 aaKnown RBP9.14□□□□□ -0.95
VPS38YLR360W TGL3P40308 642 aa9.1□□□□□ -0.95
VPS38YLR360W SSP1P38871 571 aa9.08□□□□□ -0.96
VPS38YLR360W RSM7P47150 247 aa9.05□□□□□ -0.96
VPS38YLR360W EPS1P40557 701 aa9.01□□□□□ -0.97
VPS38YLR360W YLR271WQ06152 274 aa9.01□□□□□ -0.97
VPS38YLR360W BDF1P35817 686 aa8.98□□□□□ -0.97
VPS38YLR360W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.97□□□□□ -0.97not detected
VPS38YLR360W AI2P03876 854 aa8.92□□□□□ -0.98
VPS38YLR360W BBC1P47068 1157 aa8.9□□□□□ -0.98
VPS38YLR360W UBP9P39967 754 aa8.86□□□□□ -0.99
VPS38YLR360W MGA2P40578 1113 aa8.78□□□□□ -1
VPS38YLR360W SIS1P25294 352 aaKnown RBP8.77□□□□□ -1.01
VPS38YLR360W PSD2P53037 1138 aaKnown RBP8.77□□□□□ -1.01
VPS38YLR360W CST9Q06032 482 aa8.73□□□□□ -1.01
VPS38YLR360W MST1P07236 462 aa8.7□□□□□ -1.02
VPS38YLR360W YOR238WQ08634 303 aa8.68□□□□□ -1.02
VPS38YLR360W MRM1P25270 412 aa8.65□□□□□ -1.02
VPS38YLR360W YBL029C-AQ3E756 94 aa8.64□□□□□ -1.03
VPS38YLR360W NSR1P27476 414 aaKnown RBP RIP-Chip data8.63□□□□□ -1.03not detected
VPS38YLR360W YAP5P40574 245 aa8.59□□□□□ -1.03
VPS38YLR360W VNX1P42839 908 aa8.52□□□□□ -1.05
VPS38YLR360W RTG3P38165 486 aa8.51□□□□□ -1.05
VPS38YLR360W WSC3Q12215 556 aa8.49□□□□□ -1.05
VPS38YLR360W RCR1P38212 213 aa8.46□□□□□ -1.06
VPS38YLR360W SPP1Q03012 353 aa8.45□□□□□ -1.06
VPS38YLR360W PIB1Q06651 286 aa8.45□□□□□ -1.06
VPS38YLR360W GTT3P39996 337 aa8.42□□□□□ -1.06
VPS38YLR360W VPS29P38759 282 aa8.4□□□□□ -1.06
VPS38YLR360W YMR1P47147 688 aaKnown RBP RIP-Chip data8.37□□□□□ -1.07not detected
VPS38YLR360W RQC2Q12532 1038 aaKnown RBP8.36□□□□□ -1.07
VPS38YLR360W RAM2P29703 316 aa8.35□□□□□ -1.07
VPS38YLR360W TIF11P38912 153 aaKnown RBP8.35□□□□□ -1.07
VPS38YLR360W DMA1P38823 416 aa8.34□□□□□ -1.07
VPS38YLR360W YFR006WP43590 535 aa8.34□□□□□ -1.07
VPS38YLR360W DBP1P24784 617 aaKnown RBP8.33□□□□□ -1.08
VPS38YLR360W STS1P38637 319 aa8.29□□□□□ -1.08
VPS38YLR360W AIR2Q12476 344 aaKnown RBP8.27□□□□□ -1.09
VPS38YLR360W MAK11P20484 414 aaKnown RBP8.25□□□□□ -1.09
VPS38YLR360W FKH1P40466 484 aa8.25□□□□□ -1.09
VPS38YLR360W ULI1P43604 169 aa8.25□□□□□ -1.09
VPS38YLR360W LDB19Q12502 818 aa8.24□□□□□ -1.09
VPS38YLR360W IOC2Q12072 812 aa8.23□□□□□ -1.09
VPS38YLR360W MIF2P35201 549 aa8.19□□□□□ -1.1
VPS38YLR360W SET4P42948 560 aa8.19□□□□□ -1.1
VPS38YLR360W YOL036WQ08206 761 aa8.19□□□□□ -1.1
VPS38YLR360W MSB4Q12317 492 aa8.18□□□□□ -1.1
VPS38YLR360W VMA1P17255 1071 aaKnown RBP8.17□□□□□ -1.1
VPS38YLR360W YJL171CP46992 396 aa8.17□□□□□ -1.1
VPS38YLR360W COQ8P27697 501 aa8.14□□□□□ -1.11
VPS38YLR360W EAP1P36041 632 aaKnown RBP8.13□□□□□ -1.11
VPS38YLR360W TRP5P00931 707 aaKnown RBP8.12□□□□□ -1.11
VPS38YLR360W SET1P38827 1080 aaKnown RBP8.12□□□□□ -1.11
VPS38YLR360W EDS1P38073 919 aa8.1□□□□□ -1.11
VPS38YLR360W SAM3Q08986 587 aa8.09□□□□□ -1.11
VPS38YLR360W RTG1P32607 177 aa8.08□□□□□ -1.12
VPS38YLR360W PTC3P34221 468 aaKnown RBP8.06□□□□□ -1.12
VPS38YLR360W BMT6Q12291 365 aa8.06□□□□□ -1.12
VPS38YLR360W GYP5Q12344 894 aa8.04□□□□□ -1.12
VPS38YLR360W YNL035CP53962 389 aaKnown RBP8.02□□□□□ -1.13
VPS38YLR360W GRE2Q12068 342 aaKnown RBP8.02□□□□□ -1.13
VPS38YLR360W ATH1P48016 1211 aa8.01□□□□□ -1.13
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms