Protein–RNA interactions for Protein: Q08387

DNL4, DNA ligase 4, yeastyeast

Predicted RBP Predictions only

Length 944 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
DNL4Q08387 YML009W-BYML009W-B 477 nt22.05■■□□□ 1.12
DNL4Q08387 NSR1YGR159C 1245 nt21.66■■□□□ 1.06
DNL4Q08387 NOP1YDL014W 984 nt21.55■■□□□ 1.04
DNL4Q08387 YKL036CYKL036C 393 nt20.1■□□□□ 0.81
DNL4Q08387 MDJ1YFL016C 1536 nt18.99■□□□□ 0.63
DNL4Q08387 Q0297Q0297 156 nt18.91■□□□□ 0.62
DNL4Q08387 YJL027CYJL027C 417 nt18.82■□□□□ 0.6
DNL4Q08387 SRX1YKL086W 384 nt18.8■□□□□ 0.6
DNL4Q08387 SCS3YGL126W 1143 nt18.41■□□□□ 0.54
DNL4Q08387 YCR051WYCR051W 669 nt17.87■□□□□ 0.45
DNL4Q08387 YOL085CYOL085C 342 nt17.38■□□□□ 0.37
DNL4Q08387 PKP1YIL042C 1185 nt17.09■□□□□ 0.33
DNL4Q08387 RPP1BYDL130W 321 nt16.97■□□□□ 0.31
DNL4Q08387 DBP2YNL112W 1641 nt16.87■□□□□ 0.29
DNL4Q08387 TRN1tP(UGG)A 72 nt16.85■□□□□ 0.29
DNL4Q08387 SUF9tP(UGG)F 72 nt16.85■□□□□ 0.29
DNL4Q08387 SUF8tP(UGG)H 72 nt16.85■□□□□ 0.29
DNL4Q08387 tP(UGG)LtP(UGG)L 72 nt16.85■□□□□ 0.29
DNL4Q08387 SUF7tP(UGG)M 72 nt16.85■□□□□ 0.29
DNL4Q08387 tP(UGG)N1tP(UGG)N1 72 nt16.85■□□□□ 0.29
DNL4Q08387 tP(UGG)N2tP(UGG)N2 72 nt16.85■□□□□ 0.29
DNL4Q08387 tP(UGG)O1tP(UGG)O1 72 nt16.85■□□□□ 0.29
DNL4Q08387 SUF11tP(UGG)O2 72 nt16.85■□□□□ 0.29
DNL4Q08387 CCC1YLR220W 969 nt16.68■□□□□ 0.26
DNL4Q08387 SCJ1YMR214W 1134 nt16.64■□□□□ 0.25
DNL4Q08387 ATS1YAL020C 1002 nt16.53■□□□□ 0.24
DNL4Q08387 PET122YER153C 765 nt16.18■□□□□ 0.18
DNL4Q08387 YBR190WYBR190W 312 nt16.13■□□□□ 0.17
DNL4Q08387 SCR1SCR1 522 nt16.12■□□□□ 0.17
DNL4Q08387 tP(UGG)O3tP(UGG)O3 72 nt16.02■□□□□ 0.16
DNL4Q08387 RVS167YDR388W 1449 nt16.02■□□□□ 0.15
DNL4Q08387 RTC3YHR087W 336 nt15.81■□□□□ 0.12
DNL4Q08387 RRN5YLR141W 1092 nt15.73■□□□□ 0.11
DNL4Q08387 RSB1YOR049C 1065 nt15.52■□□□□ 0.08
DNL4Q08387 YDJ1YNL064C 1230 nt15.5■□□□□ 0.07
DNL4Q08387 SHR5YOL110W 714 nt15.49■□□□□ 0.07
DNL4Q08387 YER088W-BYER088W-B 147 nt15.43■□□□□ 0.06
DNL4Q08387 PST2YDR032C 597 nt15.24■□□□□ 0.03
DNL4Q08387 SSA3YBL075C 1950 nt15.13■□□□□ 0.01
DNL4Q08387 GAR1YHR089C 618 nt15.12■□□□□ 0.01
DNL4Q08387 DEP1YAL013W 1218 nt14.94□□□□□ -0.02
DNL4Q08387 URN1YPR152C 1398 nt14.88□□□□□ -0.03
DNL4Q08387 YKL097CYKL097C 411 nt14.83□□□□□ -0.04
DNL4Q08387 RPN10YHR200W 807 nt14.76□□□□□ -0.05
DNL4Q08387 YNL208WYNL208W 600 nt14.75□□□□□ -0.05
DNL4Q08387 OPI9YLR338W 858 nt14.6□□□□□ -0.07
DNL4Q08387 TIR1YER011W 765 nt14.59□□□□□ -0.07
DNL4Q08387 SHU1YHL006C 453 nt14.57□□□□□ -0.08
DNL4Q08387 SAH1YER043C 1350 nt14.44□□□□□ -0.1
DNL4Q08387 PUT4YOR348C 1884 nt14.42□□□□□ -0.1
DNL4Q08387 SSA1YAL005C 1929 nt14.34□□□□□ -0.11
DNL4Q08387 YAL037C-BYAL037C-B 975 nt14.25□□□□□ -0.13
DNL4Q08387 ARE1YCR048W 1833 nt14.24□□□□□ -0.13
DNL4Q08387 PUN1YLR414C 792 nt14.21□□□□□ -0.13
DNL4Q08387 YJR018WYJR018W 363 nt14.2□□□□□ -0.14
DNL4Q08387 YOR139CYOR139C 393 nt14.14□□□□□ -0.15
DNL4Q08387 SRB2YHR041C 633 nt14.12□□□□□ -0.15
DNL4Q08387 YHR049C-AYHR049C-A 297 nt14.1□□□□□ -0.15
DNL4Q08387 RPP2BYDR382W 333 nt14.03□□□□□ -0.16
DNL4Q08387 YGR021WYGR021W 873 nt14.03□□□□□ -0.16
DNL4Q08387 NPL3YDR432W 1245 nt14.02□□□□□ -0.17
DNL4Q08387 YJR120WYJR120W 351 nt14□□□□□ -0.17
DNL4Q08387 POA1YBR022W 534 nt14□□□□□ -0.17
DNL4Q08387 WWM1YFL010C 636 nt13.98□□□□□ -0.17
DNL4Q08387 PTC2YER089C 1395 nt13.96□□□□□ -0.17
DNL4Q08387 HOM6YJR139C 1080 nt13.96□□□□□ -0.17
DNL4Q08387 MNP1YGL068W 585 nt13.93□□□□□ -0.18
DNL4Q08387 YOL037CYOL037C 354 nt13.84□□□□□ -0.19
DNL4Q08387 BUD23YCR047C 828 nt13.8□□□□□ -0.2
DNL4Q08387 YFL021C-AYFL021C-A 855 nt13.78□□□□□ -0.2
DNL4Q08387 BDH2YAL061W 1254 nt13.76□□□□□ -0.21
DNL4Q08387 RKM5YLR137W 1104 nt13.76□□□□□ -0.21
DNL4Q08387 NAB2YGL122C 1578 nt13.75□□□□□ -0.21
DNL4Q08387 INM2YDR287W 879 nt13.67□□□□□ -0.22
DNL4Q08387 BSC6YOL137W 1494 nt13.66□□□□□ -0.22
DNL4Q08387 DAL1YIR027C 1383 nt13.63□□□□□ -0.23
DNL4Q08387 LSM3YLR438C-A 270 nt13.63□□□□□ -0.23
DNL4Q08387 FPR4YLR449W 1179 nt13.62□□□□□ -0.23
DNL4Q08387 YBL100CYBL100C 315 nt13.6□□□□□ -0.23
DNL4Q08387 FIS1YIL065C 468 nt13.59□□□□□ -0.23
DNL4Q08387 tM(CAU)CtM(CAU)C 72 nt13.56□□□□□ -0.24
DNL4Q08387 IMT4tM(CAU)E 72 nt13.56□□□□□ -0.24
DNL4Q08387 IMT3tM(CAU)J3 72 nt13.56□□□□□ -0.24
DNL4Q08387 IMT1tM(CAU)O1 72 nt13.56□□□□□ -0.24
DNL4Q08387 IMT2tM(CAU)P 72 nt13.56□□□□□ -0.24
DNL4Q08387 PHO4YFR034C 939 nt13.5□□□□□ -0.25
DNL4Q08387 TRM9YML014W 840 nt13.46□□□□□ -0.25
DNL4Q08387 YLR281CYLR281C 468 nt13.45□□□□□ -0.26
DNL4Q08387 FUN26YAL022C 1554 nt13.43□□□□□ -0.26
DNL4Q08387 PUS2YGL063W 1113 nt13.41□□□□□ -0.26
DNL4Q08387 WHI5YOR083W 888 nt13.38□□□□□ -0.27
DNL4Q08387 CCT6YDR188W 1641 nt13.31□□□□□ -0.28
DNL4Q08387 ALF1YNL148C 765 nt13.23□□□□□ -0.29
DNL4Q08387 SUF2tP(AGG)C 72 nt13.21□□□□□ -0.29
DNL4Q08387 SUF10tP(AGG)N 72 nt13.21□□□□□ -0.29
DNL4Q08387 YLR154C-GYLR154C-G 150 nt13.18□□□□□ -0.3
DNL4Q08387 MOT3YMR070W 1473 nt13.16□□□□□ -0.3
DNL4Q08387 DSK2YMR276W 1122 nt13.15□□□□□ -0.3
DNL4Q08387 IMP2'YIL154C 1041 nt13.12□□□□□ -0.31
DNL4Q08387 YPS1YLR120C 1710 nt13.12□□□□□ -0.31
Retrieved 100 of 7,029 protein–RNA pairs in 8.1 ms