RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	YDR387C	Q04162	555 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	URH1	Q04179	340 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	URC2	Q04411	772 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	YDL218W	Q07629	317 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	YOR389W	Q08912	624 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	AHC1	Q12433	566 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	CFT1	Q06632	1357 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	BUB3	P26449	341 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	2.21	□□□□□ -2.06	not detected
SNU114	YKL173W	YKR015C	P36111	568 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	STV1	P37296	890 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	GDT1	P38301	280 aa	Predicted RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	YAL037W	P39728	267 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	IAH1	P41734	238 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	HSH155	P49955	971 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	RRP46	P53256	223 aa	Predicted RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	SCW4	P53334	386 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	DUG3	P53871	357 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	GPI15	P53961	229 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	ARK1	P53974	638 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	GIP3	Q03016	1276 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	SLD5	Q03406	294 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	ATX2	Q12067	313 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	PDR5	P33302	1511 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	TDH1	P00360	332 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	HXT2	P23585	541 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	GRR1	P24814	1151 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	MEI5	P32489	222 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	ZUO1	P32527	433 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	SPC34	P36131	295 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	SLX1	P38324	304 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	CDC40	P40968	455 aa	Predicted RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	MSS2	P40990	351 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	YFR018C	P43599	363 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	YGR067C	P53243	804 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	PRM1	P53835	661 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	MMT1	Q03218	510 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	NNT1	Q05874	261 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	YLR413W	Q06689	675 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	NSE1	Q07913	336 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	SMC5	Q08204	1093 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	SRL1	Q08673	210 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	LAG2	Q92325	660 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	BI2	P03873	423 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	OPI3	P05375	206 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	GAL7	P08431	366 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	PRB1	P09232	635 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	GCD2	P12754	651 aa	Predicted RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	MSN4	P33749	630 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	BMH2	P34730	273 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	YKL070W	P36087	169 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	ATP3	P38077	311 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	ERG7	P38604	731 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	2.2	□□□□□ -2.06	not detected
SNU114	YKL173W	YMR034C	Q05131	434 aa	Predicted RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	SSQ1	Q05931	657 aa	Predicted RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	VAC14	Q06708	880 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	BRX1	Q08235	291 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	BSC1	Q12140	328 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	LDB17	Q12342	491 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	MSS51	P32335	436 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	FRE1	P32791	686 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	TPO5	P36029	618 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	LAG1	P38703	411 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	INM1	P38710	295 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	YGL242C	P53066	181 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	EGD1	Q02642	157 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	SPO19	Q03029	223 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	IVY1	Q04934	453 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	TSR1	Q07381	788 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	TLG2	Q08144	397 aa		2.2	□□□□□ -2.06
SNU114	YKL173W	LSP1	Q12230	341 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	PAA1	Q12447	191 aa	Known RBP	2.2	□□□□□ -2.06
SNU114	YKL173W	SSK22	P25390	1331 aa	Predicted RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	CDC37	P06101	506 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	PDE2	P06776	526 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	DBR1	P24309	405 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	KKQ8	P36004	724 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	YHB1	P39676	399 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	LCP5	P40079	357 aa	Predicted RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	SIM1	P40472	476 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	TIM21	P53220	239 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	RTT102	P53330	157 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	RRN9	P53437	365 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	COS1	P53822	381 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	YIF1	P53845	314 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	TAF12	Q03761	539 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	NUP53	Q03790	475 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	CAB5	Q03941	241 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	SWF1	Q04629	336 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	THI20	Q08224	551 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	ABP140	Q08641	628 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	RBD2	Q12270	262 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	PFK27	Q12471	397 aa	Predicted RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	TY3B-I	Q7LHG5	1498 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	UNG1	P12887	359 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	FAR1	P21268	830 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	MEK1	P24719	497 aa	Predicted RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	PET18	P25362	215 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	YCL068C	P25593	260 aa		2.19	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms