RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	MTC1	P47018	478 aa	Known RBP	7.62	□□□□□ -1.19
SNU114	YKL173W	DRS1	P32892	752 aa	Known RBP	7.3	□□□□□ -1.24
SNU114	YKL173W	FAP1	P53971	965 aa		6.36	□□□□□ -1.39
SNU114	YKL173W	DIP2	Q12220	943 aa	Predicted RBP	6.34	□□□□□ -1.39
SNU114	YKL173W	AVT3	P36062	692 aa		6.3	□□□□□ -1.4
SNU114	YKL173W	PRI1	P10363	409 aa		6.3	□□□□□ -1.4
SNU114	YKL173W	ISW2	Q08773	1120 aa		6.18	□□□□□ -1.42
SNU114	YKL173W	BFR2	Q06631	534 aa	Known RBP	6.17	□□□□□ -1.42
SNU114	YKL173W	AAD16	Q02895	342 aa		6.15	□□□□□ -1.43
SNU114	YKL173W	RPG1	P38249	964 aa	Known RBP	6.12	□□□□□ -1.43
SNU114	YKL173W	RSE1	Q04693	1361 aa	Known RBP	6.02	□□□□□ -1.45
SNU114	YKL173W	PRY3	P47033	881 aa		6	□□□□□ -1.45
SNU114	YKL173W	YCK3	P39962	524 aa		5.93	□□□□□ -1.46
SNU114	YKL173W	TSR3	Q12094	313 aa	Known RBP	5.87	□□□□□ -1.47
SNU114	YKL173W	RPL17A	P05740	184 aa	Known RBP	5.79	□□□□□ -1.48
SNU114	YKL173W	RPL17B	P46990	184 aa	Known RBP	5.79	□□□□□ -1.48
SNU114	YKL173W	TFA1	P36100	482 aa		5.77	□□□□□ -1.49
SNU114	YKL173W	SPT21	P35209	758 aa		5.73	□□□□□ -1.49
SNU114	YKL173W	HAA1	Q12753	694 aa	Known RBP	5.72	□□□□□ -1.49
SNU114	YKL173W	REB1	P21538	810 aa		5.7	□□□□□ -1.5
SNU114	YKL173W	MRPL32	P25348	183 aa		5.6	□□□□□ -1.51
SNU114	YKL173W	YKR023W	P36119	530 aa	Known RBP	5.58	□□□□□ -1.52
SNU114	YKL173W	RIM101	P33400	625 aa		5.57	□□□□□ -1.52
SNU114	YKL173W	CDC27	P38042	758 aa		5.49	□□□□□ -1.53
SNU114	YKL173W	TFC8	Q12308	588 aa		5.44	□□□□□ -1.54
SNU114	YKL173W	OXP1	P28273	1286 aa		5.39	□□□□□ -1.55
SNU114	YKL173W	HO	P09932	586 aa		5.36	□□□□□ -1.55
SNU114	YKL173W	YGL015C	P33199	130 aa		5.35	□□□□□ -1.55
SNU114	YKL173W	DCD1	P06773	312 aa		5.34	□□□□□ -1.55
SNU114	YKL173W	UBP10	P53874	792 aa	Predicted RBP	5.29	□□□□□ -1.56
SNU114	YKL173W	BCH2	P36122	765 aa		5.26	□□□□□ -1.57
SNU114	YKL173W	MAP2	P38174	421 aa	Known RBP	5.25	□□□□□ -1.57
SNU114	YKL173W	YLR271W	Q06152	274 aa		5.18	□□□□□ -1.58
SNU114	YKL173W	RSM7	P47150	247 aa		5.15	□□□□□ -1.58
SNU114	YKL173W	SCY1	P53009	804 aa		5.15	□□□□□ -1.58
SNU114	YKL173W	YIL055C	P40523	627 aa	Known RBP	5.14	□□□□□ -1.59
SNU114	YKL173W	SSP1	P38871	571 aa		5.13	□□□□□ -1.59
SNU114	YKL173W	PTP3	P40048	928 aa		5.13	□□□□□ -1.59
SNU114	YKL173W	EPS1	P40557	701 aa		5.13	□□□□□ -1.59
SNU114	YKL173W	BDF1	P35817	686 aa		5.12	□□□□□ -1.59
SNU114	YKL173W	PSD2	P53037	1138 aa	Known RBP	5.1	□□□□□ -1.59
SNU114	YKL173W	AI2	P03876	854 aa		5.09	□□□□□ -1.59
SNU114	YKL173W	YAH1	Q12184	172 aa	Known RBP	5.09	□□□□□ -1.59
SNU114	YKL173W	SLX5	P32828	619 aa	Known RBP	5.07	□□□□□ -1.6
SNU114	YKL173W	TGL3	P40308	642 aa		5.06	□□□□□ -1.6
SNU114	YKL173W	BBC1	P47068	1157 aa		5.02	□□□□□ -1.61
SNU114	YKL173W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
SNU114	YKL173W	MGA2	P40578	1113 aa		4.99	□□□□□ -1.61
SNU114	YKL173W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
SNU114	YKL173W	TIF4632	P39936	914 aa	Known RBP	4.99	□□□□□ -1.61
SNU114	YKL173W	CST9	Q06032	482 aa		4.99	□□□□□ -1.61
SNU114	YKL173W	MST1	P07236	462 aa		4.97	□□□□□ -1.61
SNU114	YKL173W	MRM1	P25270	412 aa		4.89	□□□□□ -1.63
SNU114	YKL173W	VPS29	P38759	282 aa		4.88	□□□□□ -1.63
SNU114	YKL173W	RCR1	P38212	213 aa		4.86	□□□□□ -1.63
SNU114	YKL173W	BUD31	P25337	157 aa	Predicted RBP	4.84	□□□□□ -1.63
SNU114	YKL173W	RTG3	P38165	486 aa		4.83	□□□□□ -1.64
SNU114	YKL173W	YAP5	P40574	245 aa		4.83	□□□□□ -1.64
SNU114	YKL173W	YOR238W	Q08634	303 aa		4.82	□□□□□ -1.64
SNU114	YKL173W	STS1	P38637	319 aa		4.8	□□□□□ -1.64
SNU114	YKL173W	RAM2	P29703	316 aa		4.8	□□□□□ -1.64
SNU114	YKL173W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
SNU114	YKL173W	DBP1	P24784	617 aa	Known RBP	4.75	□□□□□ -1.65
SNU114	YKL173W	MAK11	P20484	414 aa	Known RBP	4.74	□□□□□ -1.65
SNU114	YKL173W	SAM3	Q08986	587 aa		4.72	□□□□□ -1.65
SNU114	YKL173W	VNX1	P42839	908 aa		4.71	□□□□□ -1.66
SNU114	YKL173W	VMA1	P17255	1071 aa	Known RBP	4.71	□□□□□ -1.66
SNU114	YKL173W	UBP9	P39967	754 aa		4.7	□□□□□ -1.66
SNU114	YKL173W	YBL029C-A	Q3E756	94 aa		4.7	□□□□□ -1.66
SNU114	YKL173W	YFR006W	P43590	535 aa		4.7	□□□□□ -1.66
SNU114	YKL173W	RQC2	Q12532	1038 aa	Known RBP	4.69	□□□□□ -1.66
SNU114	YKL173W	PIB1	Q06651	286 aa		4.69	□□□□□ -1.66
SNU114	YKL173W	EDS1	P38073	919 aa		4.67	□□□□□ -1.66
SNU114	YKL173W	NOP53	Q12080	455 aa	Known RBP	4.66	□□□□□ -1.66
SNU114	YKL173W	MSB4	Q12317	492 aa		4.65	□□□□□ -1.66
SNU114	YKL173W	IOC2	Q12072	812 aa		4.64	□□□□□ -1.67
SNU114	YKL173W	COQ8	P27697	501 aa		4.64	□□□□□ -1.67
SNU114	YKL173W	YOL036W	Q08206	761 aa		4.64	□□□□□ -1.67
SNU114	YKL173W	NST1	P53935	1240 aa		4.63	□□□□□ -1.67
SNU114	YKL173W	TIF11	P38912	153 aa	Known RBP	4.62	□□□□□ -1.67
SNU114	YKL173W	PTC3	P34221	468 aa	Known RBP	4.62	□□□□□ -1.67
SNU114	YKL173W	GTT3	P39996	337 aa		4.6	□□□□□ -1.67
SNU114	YKL173W	WSC3	Q12215	556 aa		4.59	□□□□□ -1.67
SNU114	YKL173W	SPP1	Q03012	353 aa		4.59	□□□□□ -1.67
SNU114	YKL173W	YPR148C	Q06523	435 aa		4.59	□□□□□ -1.67
SNU114	YKL173W	ABP1	P15891	592 aa	Known RBP	4.59	□□□□□ -1.68
SNU114	YKL173W	SET1	P38827	1080 aa	Known RBP	4.59	□□□□□ -1.68
SNU114	YKL173W	SOL3	P38858	249 aa		4.58	□□□□□ -1.68
SNU114	YKL173W	DAN4	P47179	1161 aa		4.58	□□□□□ -1.68
SNU114	YKL173W	EAP1	P36041	632 aa	Known RBP	4.58	□□□□□ -1.68
SNU114	YKL173W	SET4	P42948	560 aa		4.58	□□□□□ -1.68
SNU114	YKL173W	SAS10	Q12136	610 aa	Predicted RBP	4.57	□□□□□ -1.68
SNU114	YKL173W	TRP5	P00931	707 aa	Known RBP	4.57	□□□□□ -1.68
SNU114	YKL173W	DMA1	P38823	416 aa		4.57	□□□□□ -1.68
SNU114	YKL173W	MIF2	P35201	549 aa		4.56	□□□□□ -1.68
SNU114	YKL173W	GYP5	Q12344	894 aa		4.56	□□□□□ -1.68
SNU114	YKL173W	GUT1	P32190	709 aa		4.56	□□□□□ -1.68
SNU114	YKL173W	FKH1	P40466	484 aa		4.56	□□□□□ -1.68
SNU114	YKL173W	ULI1	P43604	169 aa		4.56	□□□□□ -1.68
SNU114	YKL173W	AIR2	Q12476	344 aa	Known RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms