Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 NSR1YGR159C 1245 nt14.9□□□□□ -0.02
CDC40P40968 YML009W-BYML009W-B 477 nt14.69□□□□□ -0.06
CDC40P40968 NOP1YDL014W 984 nt14.24□□□□□ -0.13
CDC40P40968 MDJ1YFL016C 1536 nt14□□□□□ -0.17
CDC40P40968 YKL036CYKL036C 393 nt12.9□□□□□ -0.34
CDC40P40968 YJL027CYJL027C 417 nt12.81□□□□□ -0.36
CDC40P40968 SSA3YBL075C 1950 nt12.79□□□□□ -0.36
CDC40P40968 SRX1YKL086W 384 nt12.41□□□□□ -0.42
CDC40P40968 Q0297Q0297 156 nt12.36□□□□□ -0.43
CDC40P40968 YBR190WYBR190W 312 nt12.11□□□□□ -0.47
CDC40P40968 DBP2YNL112W 1641 nt12.08□□□□□ -0.48
CDC40P40968 RTC3YHR087W 336 nt11.78□□□□□ -0.52
CDC40P40968 YCR051WYCR051W 669 nt11.76□□□□□ -0.53
CDC40P40968 SCS3YGL126W 1143 nt11.63□□□□□ -0.55
CDC40P40968 PUT4YOR348C 1884 nt11.62□□□□□ -0.55
CDC40P40968 Q0182Q0182 405 nt11.38□□□□□ -0.59
CDC40P40968 TRN1tP(UGG)A 72 nt11.33□□□□□ -0.6
CDC40P40968 SUF9tP(UGG)F 72 nt11.33□□□□□ -0.6
CDC40P40968 SUF8tP(UGG)H 72 nt11.33□□□□□ -0.6
CDC40P40968 tP(UGG)LtP(UGG)L 72 nt11.33□□□□□ -0.6
CDC40P40968 SUF7tP(UGG)M 72 nt11.33□□□□□ -0.6
CDC40P40968 tP(UGG)N1tP(UGG)N1 72 nt11.33□□□□□ -0.6
CDC40P40968 tP(UGG)N2tP(UGG)N2 72 nt11.33□□□□□ -0.6
CDC40P40968 tP(UGG)O1tP(UGG)O1 72 nt11.33□□□□□ -0.6
CDC40P40968 SUF11tP(UGG)O2 72 nt11.33□□□□□ -0.6
CDC40P40968 CCC1YLR220W 969 nt11.23□□□□□ -0.61
CDC40P40968 SPT5YML010W 3192 nt11.2□□□□□ -0.62
CDC40P40968 SSA4YER103W 1929 nt11.17□□□□□ -0.62
CDC40P40968 ARE1YCR048W 1833 nt11.17□□□□□ -0.62
CDC40P40968 YOL085CYOL085C 342 nt11.17□□□□□ -0.62
CDC40P40968 POA1YBR022W 534 nt11.17□□□□□ -0.62
CDC40P40968 RVS167YDR388W 1449 nt11.13□□□□□ -0.63
CDC40P40968 BSC6YOL137W 1494 nt11.1□□□□□ -0.63
CDC40P40968 RPP1BYDL130W 321 nt11.09□□□□□ -0.63
CDC40P40968 YHR049C-AYHR049C-A 297 nt11.03□□□□□ -0.64
CDC40P40968 PKP1YIL042C 1185 nt11□□□□□ -0.65
CDC40P40968 SCJ1YMR214W 1134 nt10.99□□□□□ -0.65
CDC40P40968 SAH1YER043C 1350 nt10.91□□□□□ -0.66
CDC40P40968 SSA1YAL005C 1929 nt10.9□□□□□ -0.67
CDC40P40968 BDF1YLR399C 2061 nt10.85□□□□□ -0.67
CDC40P40968 OPI9YLR338W 858 nt10.77□□□□□ -0.69
CDC40P40968 URN1YPR152C 1398 nt10.77□□□□□ -0.69
CDC40P40968 BUD23YCR047C 828 nt10.69□□□□□ -0.7
CDC40P40968 TAT1YBR069C 1860 nt10.68□□□□□ -0.7
CDC40P40968 PAC11YDR488C 1602 nt10.66□□□□□ -0.7
CDC40P40968 tP(UGG)O3tP(UGG)O3 72 nt10.66□□□□□ -0.7
CDC40P40968 MOT3YMR070W 1473 nt10.64□□□□□ -0.71
CDC40P40968 PET122YER153C 765 nt10.59□□□□□ -0.71
CDC40P40968 SHR5YOL110W 714 nt10.58□□□□□ -0.72
CDC40P40968 FPS1YLL043W 2010 nt10.57□□□□□ -0.72
CDC40P40968 DEP1YAL013W 1218 nt10.55□□□□□ -0.72
CDC40P40968 MEP2YNL142W 1500 nt10.49□□□□□ -0.73
CDC40P40968 SCR1SCR1 522 nt10.47□□□□□ -0.73
CDC40P40968 ATS1YAL020C 1002 nt10.46□□□□□ -0.73
CDC40P40968 PTC2YER089C 1395 nt10.45□□□□□ -0.74
CDC40P40968 PUN1YLR414C 792 nt10.43□□□□□ -0.74
CDC40P40968 NAB2YGL122C 1578 nt10.41□□□□□ -0.74
CDC40P40968 NVJ2YPR091C 2313 nt10.41□□□□□ -0.74
CDC40P40968 RPN10YHR200W 807 nt10.4□□□□□ -0.74
CDC40P40968 YDJ1YNL064C 1230 nt10.34□□□□□ -0.75
CDC40P40968 DCW1YKL046C 1350 nt10.32□□□□□ -0.76
CDC40P40968 RRN5YLR141W 1092 nt10.29□□□□□ -0.76
CDC40P40968 YNL208WYNL208W 600 nt10.28□□□□□ -0.76
CDC40P40968 FIS1YIL065C 468 nt10.24□□□□□ -0.77
CDC40P40968 YBR220CYBR220C 1683 nt10.24□□□□□ -0.77
CDC40P40968 YJR018WYJR018W 363 nt10.21□□□□□ -0.77
CDC40P40968 EMI2YDR516C 1503 nt10.15□□□□□ -0.78
CDC40P40968 YPS1YLR120C 1710 nt10.14□□□□□ -0.79
CDC40P40968 DAL1YIR027C 1383 nt10.14□□□□□ -0.79
CDC40P40968 GAR1YHR089C 618 nt10.11□□□□□ -0.79
CDC40P40968 YMR090WYMR090W 684 nt10.1□□□□□ -0.79
CDC40P40968 YER088W-BYER088W-B 147 nt10.08□□□□□ -0.8
CDC40P40968 FPR4YLR449W 1179 nt10.08□□□□□ -0.8
CDC40P40968 PHO4YFR034C 939 nt10.06□□□□□ -0.8
CDC40P40968 YHR165W-AYHR165W-A 312 nt10.06□□□□□ -0.8
CDC40P40968 PCH2YBR186W 1695 nt10.06□□□□□ -0.8
CDC40P40968 SDH1YKL148C 1923 nt10.04□□□□□ -0.8
CDC40P40968 GUT2YIL155C 1950 nt10.04□□□□□ -0.8
CDC40P40968 YDL221WYDL221W 552 nt10.01□□□□□ -0.81
CDC40P40968 RSB1YOR049C 1065 nt10.01□□□□□ -0.81
CDC40P40968 YDR095CYDR095C 411 nt9.96□□□□□ -0.82
CDC40P40968 SEC11YIR022W 504 nt9.95□□□□□ -0.82
CDC40P40968 YJR120WYJR120W 351 nt9.95□□□□□ -0.82
CDC40P40968 INM2YDR287W 879 nt9.93□□□□□ -0.82
CDC40P40968 CAC2YML102W 1407 nt9.9□□□□□ -0.83
CDC40P40968 PIB2YGL023C 1908 nt9.89□□□□□ -0.83
CDC40P40968 SCC4YER147C 1875 nt9.85□□□□□ -0.83
CDC40P40968 PTP1YDL230W 1008 nt9.83□□□□□ -0.84
CDC40P40968 TIR1YER011W 765 nt9.8□□□□□ -0.84
CDC40P40968 RPP2BYDR382W 333 nt9.77□□□□□ -0.85
CDC40P40968 RPP2AYOL039W 321 nt9.75□□□□□ -0.85
CDC40P40968 IRC15YPL017C 1500 nt9.75□□□□□ -0.85
CDC40P40968 YSC84YHR016C 1407 nt9.73□□□□□ -0.85
CDC40P40968 YBL100CYBL100C 315 nt9.73□□□□□ -0.85
CDC40P40968 RTF1YGL244W 1677 nt9.73□□□□□ -0.85
CDC40P40968 PST2YDR032C 597 nt9.7□□□□□ -0.86
CDC40P40968 GIS3YLR094C 1509 nt9.69□□□□□ -0.86
CDC40P40968 UME6YDR207C 2511 nt9.68□□□□□ -0.86
CDC40P40968 YHL050CYHL050C 2094 nt9.67□□□□□ -0.86
CDC40P40968 PTK1YKL198C 1989 nt9.61□□□□□ -0.87
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms