Protein–RNA interactions for Protein: P45978

SCD6, Protein SCD6, yeastyeast

Known RBP RIP-Chip data

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SCD6P45978 YML009W-BYML009W-B 477 nt22.22■■□□□ 1.15
SCD6P45978 NSR1YGR159C 1245 nt22.01■■□□□ 1.11 RIP-Chip
SCD6P45978 NOP1YDL014W 984 nt21.7■■□□□ 1.06 RIP-Chip
SCD6P45978 YKL036CYKL036C 393 nt20.12■□□□□ 0.81
SCD6P45978 MDJ1YFL016C 1536 nt19.37■□□□□ 0.69 RIP-Chip
SCD6P45978 Q0297Q0297 156 nt19.02■□□□□ 0.64
SCD6P45978 SRX1YKL086W 384 nt18.95■□□□□ 0.62
SCD6P45978 YJL027CYJL027C 417 nt18.79■□□□□ 0.6
SCD6P45978 SCS3YGL126W 1143 nt18.34■□□□□ 0.53
SCD6P45978 YCR051WYCR051W 669 nt17.96■□□□□ 0.47 RIP-Chip
SCD6P45978 YOL085CYOL085C 342 nt17.4■□□□□ 0.38
SCD6P45978 DBP2YNL112W 1641 nt17.19■□□□□ 0.34
SCD6P45978 PKP1YIL042C 1185 nt17.09■□□□□ 0.33
SCD6P45978 RPP1BYDL130W 321 nt17.06■□□□□ 0.32
SCD6P45978 TRN1tP(UGG)A 72 nt17.05■□□□□ 0.32
SCD6P45978 SUF9tP(UGG)F 72 nt17.05■□□□□ 0.32
SCD6P45978 SUF8tP(UGG)H 72 nt17.05■□□□□ 0.32
SCD6P45978 tP(UGG)LtP(UGG)L 72 nt17.05■□□□□ 0.32
SCD6P45978 SUF7tP(UGG)M 72 nt17.05■□□□□ 0.32
SCD6P45978 tP(UGG)N1tP(UGG)N1 72 nt17.05■□□□□ 0.32
SCD6P45978 tP(UGG)N2tP(UGG)N2 72 nt17.05■□□□□ 0.32
SCD6P45978 tP(UGG)O1tP(UGG)O1 72 nt17.05■□□□□ 0.32
SCD6P45978 SUF11tP(UGG)O2 72 nt17.05■□□□□ 0.32
SCD6P45978 CCC1YLR220W 969 nt16.84■□□□□ 0.29
SCD6P45978 YBR190WYBR190W 312 nt16.53■□□□□ 0.24
SCD6P45978 SCJ1YMR214W 1134 nt16.46■□□□□ 0.23
SCD6P45978 ATS1YAL020C 1002 nt16.45■□□□□ 0.22 RIP-Chip
SCD6P45978 PET122YER153C 765 nt16.26■□□□□ 0.19
SCD6P45978 RVS167YDR388W 1449 nt16.25■□□□□ 0.19 RIP-Chip
SCD6P45978 tP(UGG)O3tP(UGG)O3 72 nt16.17■□□□□ 0.18
SCD6P45978 SCR1SCR1 522 nt16.16■□□□□ 0.18
SCD6P45978 RTC3YHR087W 336 nt16.15■□□□□ 0.18
SCD6P45978 RRN5YLR141W 1092 nt15.81■□□□□ 0.12
SCD6P45978 SHR5YOL110W 714 nt15.7■□□□□ 0.1
SCD6P45978 YDJ1YNL064C 1230 nt15.67■□□□□ 0.1
SCD6P45978 RSB1YOR049C 1065 nt15.53■□□□□ 0.08
SCD6P45978 YER088W-BYER088W-B 147 nt15.5■□□□□ 0.07
SCD6P45978 GAR1YHR089C 618 nt15.26■□□□□ 0.03
SCD6P45978 PST2YDR032C 597 nt15.21■□□□□ 0.03 RIP-Chip
SCD6P45978 URN1YPR152C 1398 nt15.17■□□□□ 0.02
SCD6P45978 DEP1YAL013W 1218 nt15.16■□□□□ 0.02
SCD6P45978 RPN10YHR200W 807 nt15.02■□□□□ -0
SCD6P45978 YNL208WYNL208W 600 nt14.99□□□□□ -0.01
SCD6P45978 OPI9YLR338W 858 nt14.94□□□□□ -0.02
SCD6P45978 PUT4YOR348C 1884 nt14.87□□□□□ -0.03
SCD6P45978 SAH1YER043C 1350 nt14.77□□□□□ -0.04
SCD6P45978 TIR1YER011W 765 nt14.75□□□□□ -0.05 RIP-Chip
SCD6P45978 YKL097CYKL097C 411 nt14.69□□□□□ -0.06
SCD6P45978 ARE1YCR048W 1833 nt14.64□□□□□ -0.07
SCD6P45978 SHU1YHL006C 453 nt14.55□□□□□ -0.08
SCD6P45978 PUN1YLR414C 792 nt14.52□□□□□ -0.09
SCD6P45978 SSA1YAL005C 1929 nt14.52□□□□□ -0.09
SCD6P45978 YJR018WYJR018W 363 nt14.49□□□□□ -0.09
SCD6P45978 YHR049C-AYHR049C-A 297 nt14.47□□□□□ -0.09
SCD6P45978 POA1YBR022W 534 nt14.42□□□□□ -0.1
SCD6P45978 PTC2YER089C 1395 nt14.28□□□□□ -0.12
SCD6P45978 SRB2YHR041C 633 nt14.27□□□□□ -0.13
SCD6P45978 YAL037C-BYAL037C-B 975 nt14.27□□□□□ -0.13
SCD6P45978 YJR120WYJR120W 351 nt14.26□□□□□ -0.13
SCD6P45978 RPP2BYDR382W 333 nt14.25□□□□□ -0.13
SCD6P45978 BUD23YCR047C 828 nt14.14□□□□□ -0.15
SCD6P45978 YGR021WYGR021W 873 nt14.11□□□□□ -0.15
SCD6P45978 NAB2YGL122C 1578 nt14.1□□□□□ -0.15
SCD6P45978 WWM1YFL010C 636 nt14.1□□□□□ -0.15
SCD6P45978 BSC6YOL137W 1494 nt14.09□□□□□ -0.15
SCD6P45978 YOR139CYOR139C 393 nt14.05□□□□□ -0.16
SCD6P45978 HOM6YJR139C 1080 nt14.04□□□□□ -0.16
SCD6P45978 INM2YDR287W 879 nt13.98□□□□□ -0.17 RIP-Chip
SCD6P45978 BDH2YAL061W 1254 nt13.98□□□□□ -0.17 RIP-Chip
SCD6P45978 MNP1YGL068W 585 nt13.95□□□□□ -0.18
SCD6P45978 NPL3YDR432W 1245 nt13.94□□□□□ -0.18
SCD6P45978 DAL1YIR027C 1383 nt13.94□□□□□ -0.18
SCD6P45978 YFL021C-AYFL021C-A 855 nt13.92□□□□□ -0.18
SCD6P45978 FIS1YIL065C 468 nt13.89□□□□□ -0.19
SCD6P45978 FPR4YLR449W 1179 nt13.88□□□□□ -0.19
SCD6P45978 SSA3YBL075C 1950 nt13.87□□□□□ -0.19 RIP-Chip
SCD6P45978 LSM3YLR438C-A 270 nt13.84□□□□□ -0.19
SCD6P45978 YBL100CYBL100C 315 nt13.84□□□□□ -0.19
SCD6P45978 YOL037CYOL037C 354 nt13.84□□□□□ -0.19
SCD6P45978 RKM5YLR137W 1104 nt13.83□□□□□ -0.2
SCD6P45978 PHO4YFR034C 939 nt13.79□□□□□ -0.2
SCD6P45978 TRM9YML014W 840 nt13.69□□□□□ -0.22
SCD6P45978 FUN26YAL022C 1554 nt13.67□□□□□ -0.22
SCD6P45978 CCT6YDR188W 1641 nt13.54□□□□□ -0.24 RIP-Chip
SCD6P45978 tM(CAU)CtM(CAU)C 72 nt13.5□□□□□ -0.25
SCD6P45978 IMT4tM(CAU)E 72 nt13.5□□□□□ -0.25
SCD6P45978 IMT3tM(CAU)J3 72 nt13.5□□□□□ -0.25
SCD6P45978 IMT1tM(CAU)O1 72 nt13.5□□□□□ -0.25
SCD6P45978 IMT2tM(CAU)P 72 nt13.5□□□□□ -0.25
SCD6P45978 YPS1YLR120C 1710 nt13.47□□□□□ -0.25
SCD6P45978 YLR281CYLR281C 468 nt13.47□□□□□ -0.25
SCD6P45978 ALF1YNL148C 765 nt13.47□□□□□ -0.25
SCD6P45978 SUF2tP(AGG)C 72 nt13.45□□□□□ -0.26
SCD6P45978 SUF10tP(AGG)N 72 nt13.45□□□□□ -0.26
SCD6P45978 YDR095CYDR095C 411 nt13.43□□□□□ -0.26
SCD6P45978 WHI5YOR083W 888 nt13.41□□□□□ -0.26
SCD6P45978 PUS2YGL063W 1113 nt13.38□□□□□ -0.27
SCD6P45978 YHR165W-AYHR165W-A 312 nt13.33□□□□□ -0.28
SCD6P45978 YLR154C-GYLR154C-G 150 nt13.3□□□□□ -0.28
SCD6P45978 SPT5YML010W 3192 nt13.27□□□□□ -0.29 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 19.7 ms