RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W TY1A-JR2P47099 440 aa8.54□□□□□ -1.04
ROT1YMR200W TY1A-DR1Q03856 440 aa8.54□□□□□ -1.04
ROT1YMR200W TY1A-ML1Q04706 440 aaKnown RBP8.54□□□□□ -1.04
ROT1YMR200W TY1A-BRQ12217 440 aa8.54□□□□□ -1.04
ROT1YMR200W TY1A-NL2Q12470 440 aa8.54□□□□□ -1.04
ROT1YMR200W TY1A-GR2Q12485 440 aa8.54□□□□□ -1.04
ROT1YMR200W PRT1P06103 763 aaKnown RBP8.53□□□□□ -1.04
ROT1YMR200W SAS4Q04003 481 aa8.52□□□□□ -1.05
ROT1YMR200W SEC2P17065 759 aa8.51□□□□□ -1.05
ROT1YMR200W NPL4P33755 580 aa8.51□□□□□ -1.05
ROT1YMR200W RAS1P01119 309 aa8.5□□□□□ -1.05
ROT1YMR200W GCD11P32481 527 aaKnown RBP8.48□□□□□ -1.05
ROT1YMR200W ERF2Q06551 359 aa8.48□□□□□ -1.05
ROT1YMR200W KEX2P13134 814 aa8.46□□□□□ -1.06
ROT1YMR200W CLB5P30283 435 aa8.46□□□□□ -1.06
ROT1YMR200W AMS1P22855 1083 aa8.44□□□□□ -1.06
ROT1YMR200W SRC1Q03707 834 aa8.44□□□□□ -1.06
ROT1YMR200W TEA1P47988 759 aa8.42□□□□□ -1.06
ROT1YMR200W NIS1P53939 407 aa8.4□□□□□ -1.06
ROT1YMR200W MRF1P30775 413 aaPredicted RBP8.39□□□□□ -1.07
ROT1YMR200W RRN7P40992 514 aa8.39□□□□□ -1.07
ROT1YMR200W YEL077CQ3E7X8 1277 aa8.38□□□□□ -1.07
ROT1YMR200W SIT4P20604 311 aa8.37□□□□□ -1.07
ROT1YMR200W SPT16P32558 1035 aaKnown RBP8.36□□□□□ -1.07
ROT1YMR200W GLC3P32775 704 aa8.36□□□□□ -1.07
ROT1YMR200W CST6P40535 587 aa8.36□□□□□ -1.07
ROT1YMR200W YNR021WP53723 404 aaKnown RBP8.35□□□□□ -1.07
ROT1YMR200W AGE1Q04412 482 aa8.35□□□□□ -1.07
ROT1YMR200W ERG12P07277 443 aa8.34□□□□□ -1.07
ROT1YMR200W PAC1P39946 494 aaKnown RBP8.34□□□□□ -1.07
ROT1YMR200W RTF1P53064 558 aa8.34□□□□□ -1.07
ROT1YMR200W YNL115CP53925 644 aa8.33□□□□□ -1.08
ROT1YMR200W FPK1P53739 893 aa8.32□□□□□ -1.08
ROT1YMR200W TUB4P53378 473 aa8.31□□□□□ -1.08
ROT1YMR200W ATF2P53296 535 aa8.3□□□□□ -1.08
ROT1YMR200W LAM6Q08001 693 aa8.3□□□□□ -1.08
ROT1YMR200W PAT1P25644 796 aaKnown RBP8.28□□□□□ -1.08
ROT1YMR200W CLA4P48562 842 aa8.28□□□□□ -1.08
ROT1YMR200W YMR196WQ04336 1088 aa8.28□□□□□ -1.08
ROT1YMR200W FRK1Q03002 865 aaPredicted RBP8.27□□□□□ -1.09
ROT1YMR200W SCJ1P25303 377 aa8.26□□□□□ -1.09
ROT1YMR200W LEO1P38439 464 aa8.26□□□□□ -1.09
ROT1YMR200W BDP1P46678 594 aa8.26□□□□□ -1.09
ROT1YMR200W MOD5P07884 428 aa8.24□□□□□ -1.09
ROT1YMR200W SLY41P22215 453 aa8.24□□□□□ -1.09
ROT1YMR200W AIR1P40507 360 aaKnown RBP8.24□□□□□ -1.09
ROT1YMR200W HST2P53686 357 aa8.24□□□□□ -1.09
ROT1YMR200W LEU3P08638 886 aa8.23□□□□□ -1.09
ROT1YMR200W TRK1P12685 1235 aa8.23□□□□□ -1.09
ROT1YMR200W AIM7Q12156 149 aa8.23□□□□□ -1.09
ROT1YMR200W TYW1Q08960 810 aaKnown RBP8.19□□□□□ -1.1
ROT1YMR200W MMP1Q12372 583 aa8.19□□□□□ -1.1
ROT1YMR200W ESS1P22696 170 aa8.17□□□□□ -1.1
ROT1YMR200W KTR1P27810 393 aaKnown RBP8.17□□□□□ -1.1
ROT1YMR200W GLN1P32288 370 aaKnown RBP8.16□□□□□ -1.1
ROT1YMR200W PUS5Q06244 254 aa8.16□□□□□ -1.1
ROT1YMR200W PDC1P06169 563 aaKnown RBP8.15□□□□□ -1.1
ROT1YMR200W TRM1P15565 570 aaKnown RBP8.15□□□□□ -1.1
ROT1YMR200W YJU3P28321 313 aa8.14□□□□□ -1.11
ROT1YMR200W PUS6P53294 404 aa8.14□□□□□ -1.11
ROT1YMR200W YDL206WQ12424 762 aa8.14□□□□□ -1.11
ROT1YMR200W KXD1P53158 218 aa8.13□□□□□ -1.11
ROT1YMR200W TBF1Q02457 562 aa8.12□□□□□ -1.11
ROT1YMR200W HED1Q03937 162 aa8.12□□□□□ -1.11
ROT1YMR200W TPD3P31383 635 aa8.11□□□□□ -1.11
ROT1YMR200W RRD1P40454 393 aaKnown RBP8.11□□□□□ -1.11
ROT1YMR200W HXT10P43581 546 aa8.11□□□□□ -1.11
ROT1YMR200W CDC4P07834 779 aa8.1□□□□□ -1.11
ROT1YMR200W KIN1P13185 1064 aa8.1□□□□□ -1.11
ROT1YMR200W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.1□□□□□ -1.11not detected
ROT1YMR200W CSN12P47130 423 aa8.09□□□□□ -1.11
ROT1YMR200W RPA14P50106 137 aa8.09□□□□□ -1.11
ROT1YMR200W PKH3Q03306 898 aaPredicted RBP8.08□□□□□ -1.12
ROT1YMR200W YPR097WQ06839 1073 aa8.08□□□□□ -1.12
ROT1YMR200W MET32Q12041 191 aa8.08□□□□□ -1.12
ROT1YMR200W RSC30P38781 883 aa8.07□□□□□ -1.12
ROT1YMR200W RPN1P38764 993 aaKnown RBP8.06□□□□□ -1.12
ROT1YMR200W ALR1Q08269 859 aa8.06□□□□□ -1.12
ROT1YMR200W BRE2P43132 505 aa8.04□□□□□ -1.12
ROT1YMR200W ARG8P18544 423 aa8□□□□□ -1.13
ROT1YMR200W ASH1P34233 588 aa7.99□□□□□ -1.13
ROT1YMR200W SYH1Q02875 849 aaKnown RBP7.99□□□□□ -1.13
ROT1YMR200W RAD59Q12223 238 aa7.99□□□□□ -1.13
ROT1YMR200W GUA1P38625 525 aaKnown RBP7.97□□□□□ -1.13
ROT1YMR200W AFT1P22149 690 aa7.96□□□□□ -1.14
ROT1YMR200W KIP2P28743 706 aa7.95□□□□□ -1.14
ROT1YMR200W SSA2P10592 639 aaKnown RBP7.94□□□□□ -1.14
ROT1YMR200W IXR1P33417 597 aa7.94□□□□□ -1.14
ROT1YMR200W GCR2Q01722 534 aa7.94□□□□□ -1.14
ROT1YMR200W VAC17P25591 423 aa7.93□□□□□ -1.14
ROT1YMR200W HST3P53687 447 aa7.93□□□□□ -1.14
ROT1YMR200W ITT1Q04638 464 aa7.92□□□□□ -1.14
ROT1YMR200W MRT4P33201 236 aaKnown RBP7.89□□□□□ -1.15
ROT1YMR200W FIG4P42837 879 aa7.89□□□□□ -1.15
ROT1YMR200W YJR115WP47152 169 aa7.88□□□□□ -1.15
ROT1YMR200W MSB3P48566 633 aaPredicted RBP7.87□□□□□ -1.15
ROT1YMR200W MAK16P10962 306 aaPredicted RBP7.86□□□□□ -1.15
ROT1YMR200W MET22P32179 357 aa7.86□□□□□ -1.15
ROT1YMR200W HPC2Q01448 625 aa7.84□□□□□ -1.15
ROT1YMR200W YPR084WQ06821 456 aa7.83□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 49.1 ms