RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	YEL077C	Q3E7X8	1277 aa		4.25	□□□□□ -1.73
NCL1	YBL024W	SPT16	P32558	1035 aa	Known RBP	4.24	□□□□□ -1.73
NCL1	YBL024W	KEX2	P13134	814 aa		4.23	□□□□□ -1.73
NCL1	YBL024W	YMR196W	Q04336	1088 aa		4.23	□□□□□ -1.73
NCL1	YBL024W	ERG12	P07277	443 aa		4.23	□□□□□ -1.73
NCL1	YBL024W	GLC3	P32775	704 aa		4.23	□□□□□ -1.73
NCL1	YBL024W	RPN1	P38764	993 aa	Known RBP	4.22	□□□□□ -1.73
NCL1	YBL024W	RTF1	P53064	558 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-DR4	O74302	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-H	P0C2I4	478 aa	Known RBP	4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-A	P0CX57	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-PR1	P0CX58	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-OR	P0CX59	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-PR2	P0CX60	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-DR5	P0CX65	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-ER2	P0CX66	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-GR3	P0CX67	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-LR1	P0CX68	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-MR2	P0CX69	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	AMS1	P22855	1083 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-JR2	P47099	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-DR1	Q03856	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-ML1	Q04706	440 aa	Known RBP	4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-BR	Q12217	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-NL2	Q12470	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	TY1A-GR2	Q12485	440 aa		4.22	□□□□□ -1.73
NCL1	YBL024W	RRN7	P40992	514 aa		4.21	□□□□□ -1.74
NCL1	YBL024W	YNL115C	P53925	644 aa		4.2	□□□□□ -1.74
NCL1	YBL024W	NIS1	P53939	407 aa		4.2	□□□□□ -1.74
NCL1	YBL024W	SEC2	P17065	759 aa		4.2	□□□□□ -1.74
NCL1	YBL024W	ERF2	Q06551	359 aa		4.2	□□□□□ -1.74
NCL1	YBL024W	AIM7	Q12156	149 aa		4.2	□□□□□ -1.74
NCL1	YBL024W	SIT4	P20604	311 aa		4.19	□□□□□ -1.74
NCL1	YBL024W	RAS1	P01119	309 aa		4.18	□□□□□ -1.74
NCL1	YBL024W	FPK1	P53739	893 aa		4.18	□□□□□ -1.74
NCL1	YBL024W	SDH2	P21801	266 aa		4.18	□□□□□ -1.74
NCL1	YBL024W	SLY41	P22215	453 aa		4.17	□□□□□ -1.74
NCL1	YBL024W	DMA2	P53924	522 aa		4.17	□□□□□ -1.74
NCL1	YBL024W	TUB4	P53378	473 aa		4.16	□□□□□ -1.74
NCL1	YBL024W	GLN1	P32288	370 aa	Known RBP	4.15	□□□□□ -1.74
NCL1	YBL024W	HST2	P53686	357 aa		4.15	□□□□□ -1.74
NCL1	YBL024W	TBF1	Q02457	562 aa		4.15	□□□□□ -1.74
NCL1	YBL024W	MMP1	Q12372	583 aa		4.15	□□□□□ -1.74
NCL1	YBL024W	FRK1	Q03002	865 aa	Predicted RBP	4.15	□□□□□ -1.75
NCL1	YBL024W	PAC1	P39946	494 aa	Known RBP	4.14	□□□□□ -1.75
NCL1	YBL024W	KXD1	P53158	218 aa		4.14	□□□□□ -1.75
NCL1	YBL024W	CST6	P40535	587 aa		4.14	□□□□□ -1.75
NCL1	YBL024W	KIN1	P13185	1064 aa		4.13	□□□□□ -1.75
NCL1	YBL024W	AGE1	Q04412	482 aa		4.13	□□□□□ -1.75
NCL1	YBL024W	SCJ1	P25303	377 aa		4.12	□□□□□ -1.75
NCL1	YBL024W	BDP1	P46678	594 aa		4.12	□□□□□ -1.75
NCL1	YBL024W	PUS6	P53294	404 aa		4.12	□□□□□ -1.75
NCL1	YBL024W	LAM6	Q08001	693 aa		4.12	□□□□□ -1.75
NCL1	YBL024W	TRK1	P12685	1235 aa		4.12	□□□□□ -1.75
NCL1	YBL024W	CSN12	P47130	423 aa		4.12	□□□□□ -1.75
NCL1	YBL024W	ESS1	P22696	170 aa		4.11	□□□□□ -1.75
NCL1	YBL024W	TYW1	Q08960	810 aa	Known RBP	4.11	□□□□□ -1.75
NCL1	YBL024W	TRM1	P15565	570 aa	Known RBP	4.1	□□□□□ -1.75
NCL1	YBL024W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
NCL1	YBL024W	SRC1	Q03707	834 aa		4.1	□□□□□ -1.75
NCL1	YBL024W	PKH3	Q03306	898 aa	Predicted RBP	4.1	□□□□□ -1.75
NCL1	YBL024W	ALR1	Q08269	859 aa		4.1	□□□□□ -1.75
NCL1	YBL024W	SSA2	P10592	639 aa	Known RBP	4.09	□□□□□ -1.75
NCL1	YBL024W	YDL206W	Q12424	762 aa		4.09	□□□□□ -1.75
NCL1	YBL024W	HXT10	P43581	546 aa		4.09	□□□□□ -1.76
NCL1	YBL024W	RPA14	P50106	137 aa		4.09	□□□□□ -1.76
NCL1	YBL024W	PDC1	P06169	563 aa	Known RBP	4.08	□□□□□ -1.76
NCL1	YBL024W	MOD5	P07884	428 aa		4.08	□□□□□ -1.76
NCL1	YBL024W	HED1	Q03937	162 aa		4.08	□□□□□ -1.76
NCL1	YBL024W	ARG8	P18544	423 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	YJU3	P28321	313 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	CDC4	P07834	779 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	TPD3	P31383	635 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	RRD1	P40454	393 aa	Known RBP	4.07	□□□□□ -1.76
NCL1	YBL024W	CLA4	P48562	842 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	PUS5	Q06244	254 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	YPR097W	Q06839	1073 aa		4.07	□□□□□ -1.76
NCL1	YBL024W	KTR1	P27810	393 aa	Known RBP	4.06	□□□□□ -1.76
NCL1	YBL024W	AIR1	P40507	360 aa	Known RBP	4.06	□□□□□ -1.76
NCL1	YBL024W	KIP2	P28743	706 aa		4.05	□□□□□ -1.76
NCL1	YBL024W	GCR2	Q01722	534 aa		4.05	□□□□□ -1.76
NCL1	YBL024W	SYH1	Q02875	849 aa	Known RBP	4.05	□□□□□ -1.76
NCL1	YBL024W	RAD59	Q12223	238 aa		4.04	□□□□□ -1.76
NCL1	YBL024W	BRE2	P43132	505 aa		4.03	□□□□□ -1.76
NCL1	YBL024W	HST3	P53687	447 aa		4.03	□□□□□ -1.76
NCL1	YBL024W	IXR1	P33417	597 aa		4.02	□□□□□ -1.77
NCL1	YBL024W	GUA1	P38625	525 aa	Known RBP	4.02	□□□□□ -1.77
NCL1	YBL024W	RSC30	P38781	883 aa		4.02	□□□□□ -1.77
NCL1	YBL024W	BRL1	P38770	471 aa		4.01	□□□□□ -1.77
NCL1	YBL024W	ASH1	P34233	588 aa		4.01	□□□□□ -1.77
NCL1	YBL024W	HPC2	Q01448	625 aa		4.01	□□□□□ -1.77
NCL1	YBL024W	MET32	Q12041	191 aa		4.01	□□□□□ -1.77
NCL1	YBL024W	RLF2	Q12495	606 aa		4.01	□□□□□ -1.77
NCL1	YBL024W	AFT1	P22149	690 aa		3.99	□□□□□ -1.77
NCL1	YBL024W	VAC17	P25591	423 aa		3.98	□□□□□ -1.77
NCL1	YBL024W	HGH1	P48362	394 aa	Known RBP	3.98	□□□□□ -1.77
NCL1	YBL024W	UGA3	P26370	528 aa		3.98	□□□□□ -1.77
NCL1	YBL024W	YBL036C	P38197	257 aa		3.98	□□□□□ -1.77
NCL1	YBL024W	MAK16	P10962	306 aa	Predicted RBP	3.97	□□□□□ -1.77
NCL1	YBL024W	TEC1	P18412	486 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms