RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	MTC1	P47018	478 aa	Known RBP	7.94	□□□□□ -1.14
NCL1	YBL024W	DRS1	P32892	752 aa	Known RBP	7.64	□□□□□ -1.19
NCL1	YBL024W	FAP1	P53971	965 aa		6.97	□□□□□ -1.29
NCL1	YBL024W	DIP2	Q12220	943 aa	Predicted RBP	6.62	□□□□□ -1.35
NCL1	YBL024W	ISW2	Q08773	1120 aa		6.59	□□□□□ -1.35
NCL1	YBL024W	PRI1	P10363	409 aa		6.57	□□□□□ -1.36
NCL1	YBL024W	AAD16	Q02895	342 aa		6.54	□□□□□ -1.36
NCL1	YBL024W	PRY3	P47033	881 aa		6.53	□□□□□ -1.36
NCL1	YBL024W	RPG1	P38249	964 aa	Known RBP	6.48	□□□□□ -1.37
NCL1	YBL024W	BFR2	Q06631	534 aa	Known RBP	6.47	□□□□□ -1.37
NCL1	YBL024W	AVT3	P36062	692 aa		6.39	□□□□□ -1.39
NCL1	YBL024W	RSE1	Q04693	1361 aa	Known RBP	6.36	□□□□□ -1.39
NCL1	YBL024W	TSR3	Q12094	313 aa	Known RBP	6.24	□□□□□ -1.41
NCL1	YBL024W	RPL17A	P05740	184 aa	Known RBP	6.14	□□□□□ -1.43
NCL1	YBL024W	RPL17B	P46990	184 aa	Known RBP	6.14	□□□□□ -1.43
NCL1	YBL024W	HAA1	Q12753	694 aa	Known RBP	6.14	□□□□□ -1.43
NCL1	YBL024W	REB1	P21538	810 aa		6.13	□□□□□ -1.43
NCL1	YBL024W	YCK3	P39962	524 aa		6.05	□□□□□ -1.44
NCL1	YBL024W	MRPL32	P25348	183 aa		6.03	□□□□□ -1.44
NCL1	YBL024W	SPT21	P35209	758 aa		5.83	□□□□□ -1.48
NCL1	YBL024W	TFA1	P36100	482 aa		5.8	□□□□□ -1.48
NCL1	YBL024W	YKR023W	P36119	530 aa	Known RBP	5.72	□□□□□ -1.49
NCL1	YBL024W	YGL015C	P33199	130 aa		5.71	□□□□□ -1.49
NCL1	YBL024W	CDC27	P38042	758 aa		5.7	□□□□□ -1.5
NCL1	YBL024W	RIM101	P33400	625 aa		5.69	□□□□□ -1.5
NCL1	YBL024W	HO	P09932	586 aa		5.63	□□□□□ -1.51
NCL1	YBL024W	TFC8	Q12308	588 aa		5.62	□□□□□ -1.51
NCL1	YBL024W	DCD1	P06773	312 aa		5.59	□□□□□ -1.52
NCL1	YBL024W	UBP10	P53874	792 aa	Predicted RBP	5.56	□□□□□ -1.52
NCL1	YBL024W	MAP2	P38174	421 aa	Known RBP	5.52	□□□□□ -1.53
NCL1	YBL024W	YIL055C	P40523	627 aa	Known RBP	5.5	□□□□□ -1.53
NCL1	YBL024W	OXP1	P28273	1286 aa		5.49	□□□□□ -1.53
NCL1	YBL024W	PTP3	P40048	928 aa		5.47	□□□□□ -1.53
NCL1	YBL024W	SCY1	P53009	804 aa		5.46	□□□□□ -1.53
NCL1	YBL024W	BCH2	P36122	765 aa		5.44	□□□□□ -1.54
NCL1	YBL024W	YAH1	Q12184	172 aa	Known RBP	5.42	□□□□□ -1.54
NCL1	YBL024W	SLX5	P32828	619 aa	Known RBP	5.4	□□□□□ -1.54
NCL1	YBL024W	RSM7	P47150	247 aa		5.38	□□□□□ -1.55
NCL1	YBL024W	TIF4632	P39936	914 aa	Known RBP	5.36	□□□□□ -1.55
NCL1	YBL024W	EPS1	P40557	701 aa		5.35	□□□□□ -1.55
NCL1	YBL024W	BBC1	P47068	1157 aa		5.33	□□□□□ -1.56
NCL1	YBL024W	SSP1	P38871	571 aa		5.32	□□□□□ -1.56
NCL1	YBL024W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.31	□□□□□ -1.56	not detected
NCL1	YBL024W	AI2	P03876	854 aa		5.3	□□□□□ -1.56
NCL1	YBL024W	BDF1	P35817	686 aa		5.3	□□□□□ -1.56
NCL1	YBL024W	TGL3	P40308	642 aa		5.29	□□□□□ -1.56
NCL1	YBL024W	YLR271W	Q06152	274 aa		5.28	□□□□□ -1.56
NCL1	YBL024W	PSD2	P53037	1138 aa	Known RBP	5.19	□□□□□ -1.58
NCL1	YBL024W	MGA2	P40578	1113 aa		5.16	□□□□□ -1.58
NCL1	YBL024W	MRM1	P25270	412 aa		5.12	□□□□□ -1.59
NCL1	YBL024W	BUD31	P25337	157 aa	Predicted RBP	5.12	□□□□□ -1.59
NCL1	YBL024W	UBP9	P39967	754 aa		5.12	□□□□□ -1.59
NCL1	YBL024W	YOR238W	Q08634	303 aa		5.12	□□□□□ -1.59
NCL1	YBL024W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
NCL1	YBL024W	YAP5	P40574	245 aa		5.11	□□□□□ -1.59
NCL1	YBL024W	CST9	Q06032	482 aa		5.11	□□□□□ -1.59
NCL1	YBL024W	MST1	P07236	462 aa		5.06	□□□□□ -1.6
NCL1	YBL024W	RTG3	P38165	486 aa		5.04	□□□□□ -1.6
NCL1	YBL024W	GTT3	P39996	337 aa		5.03	□□□□□ -1.6
NCL1	YBL024W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	5	□□□□□ -1.61	not detected
NCL1	YBL024W	PIB1	Q06651	286 aa		5	□□□□□ -1.61
NCL1	YBL024W	VPS29	P38759	282 aa		4.98	□□□□□ -1.61
NCL1	YBL024W	RQC2	Q12532	1038 aa	Known RBP	4.98	□□□□□ -1.61
NCL1	YBL024W	YBL029C-A	Q3E756	94 aa		4.97	□□□□□ -1.61
NCL1	YBL024W	WSC3	Q12215	556 aa		4.96	□□□□□ -1.61
NCL1	YBL024W	DBP1	P24784	617 aa	Known RBP	4.96	□□□□□ -1.62
NCL1	YBL024W	SIS1	P25294	352 aa	Known RBP	4.95	□□□□□ -1.62
NCL1	YBL024W	RCR1	P38212	213 aa		4.95	□□□□□ -1.62
NCL1	YBL024W	YFR006W	P43590	535 aa		4.95	□□□□□ -1.62
NCL1	YBL024W	VNX1	P42839	908 aa		4.93	□□□□□ -1.62
NCL1	YBL024W	SPP1	Q03012	353 aa		4.92	□□□□□ -1.62
NCL1	YBL024W	STS1	P38637	319 aa		4.92	□□□□□ -1.62
NCL1	YBL024W	VMA1	P17255	1071 aa	Known RBP	4.88	□□□□□ -1.63
NCL1	YBL024W	TIF11	P38912	153 aa	Known RBP	4.88	□□□□□ -1.63
NCL1	YBL024W	MSB4	Q12317	492 aa		4.88	□□□□□ -1.63
NCL1	YBL024W	RAM2	P29703	316 aa		4.87	□□□□□ -1.63
NCL1	YBL024W	MAK11	P20484	414 aa	Known RBP	4.87	□□□□□ -1.63
NCL1	YBL024W	SET4	P42948	560 aa		4.86	□□□□□ -1.63
NCL1	YBL024W	YOL036W	Q08206	761 aa		4.86	□□□□□ -1.63
NCL1	YBL024W	EAP1	P36041	632 aa	Known RBP	4.85	□□□□□ -1.63
NCL1	YBL024W	ULI1	P43604	169 aa		4.85	□□□□□ -1.63
NCL1	YBL024W	SAM3	Q08986	587 aa		4.84	□□□□□ -1.63
NCL1	YBL024W	MIF2	P35201	549 aa		4.84	□□□□□ -1.64
NCL1	YBL024W	ABP1	P15891	592 aa	Known RBP	4.82	□□□□□ -1.64
NCL1	YBL024W	GYP5	Q12344	894 aa		4.82	□□□□□ -1.64
NCL1	YBL024W	COQ8	P27697	501 aa		4.79	□□□□□ -1.64
NCL1	YBL024W	LDB19	Q12502	818 aa		4.79	□□□□□ -1.64
NCL1	YBL024W	TRP5	P00931	707 aa	Known RBP	4.79	□□□□□ -1.64
NCL1	YBL024W	DMA1	P38823	416 aa		4.78	□□□□□ -1.64
NCL1	YBL024W	GRE2	Q12068	342 aa	Known RBP	4.78	□□□□□ -1.64
NCL1	YBL024W	IOC2	Q12072	812 aa		4.78	□□□□□ -1.64
NCL1	YBL024W	HTA1	P04911	132 aa	Known RBP	4.77	□□□□□ -1.65
NCL1	YBL024W	HTA2	P04912	132 aa		4.77	□□□□□ -1.65
NCL1	YBL024W	DCW1	P36091	449 aa		4.77	□□□□□ -1.65
NCL1	YBL024W	ATH1	P48016	1211 aa		4.77	□□□□□ -1.65
NCL1	YBL024W	PTC3	P34221	468 aa	Known RBP	4.77	□□□□□ -1.65
NCL1	YBL024W	EDS1	P38073	919 aa		4.76	□□□□□ -1.65
NCL1	YBL024W	FKH1	P40466	484 aa		4.76	□□□□□ -1.65
NCL1	YBL024W	RTG1	P32607	177 aa		4.75	□□□□□ -1.65
NCL1	YBL024W	YJL171C	P46992	396 aa		4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 35.2 ms