RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 TOPBP1Q92547 1522 aa9.34□□□□□ -0.91
NEDD9-216ENST00000620854 KIF7Q2M1P5 1343 aa9.33□□□□□ -0.92
NEDD9-216ENST00000620854 SKAP1Q86WV1 359 aa9.33□□□□□ -0.92
NEDD9-216ENST00000620854 JPH4Q96JJ6 628 aa9.33□□□□□ -0.92
NEDD9-216ENST00000620854 PCF11O94913 1555 aaKnown RBP9.33□□□□□ -0.92
NEDD9-216ENST00000620854 LAMC3Q9Y6N6 1575 aa9.33□□□□□ -0.92
NEDD9-216ENST00000620854 NAIPQ13075 1403 aa9.33□□□□□ -0.92
NEDD9-216ENST00000620854 CCDC7Q96M83 1385 aa9.32□□□□□ -0.92
NEDD9-216ENST00000620854 NEFMP07197 916 aa9.32□□□□□ -0.92
NEDD9-216ENST00000620854 CNTLNQ9NXG0 1405 aa9.31□□□□□ -0.92
NEDD9-216ENST00000620854 NUDCQ9Y266 331 aa9.31□□□□□ -0.92
NEDD9-216ENST00000620854 KDM2AQ9Y2K7 1162 aa9.31□□□□□ -0.92
NEDD9-216ENST00000620854 POLA1P09884 1462 aaPredicted RBP9.31□□□□□ -0.92
NEDD9-216ENST00000620854 HFM1A2PYH4 1435 aa9.31□□□□□ -0.92
NEDD9-216ENST00000620854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.31□□□□□ -0.929e-10■□□□□ 9.9
NEDD9-216ENST00000620854 EXOC6Q8TAG9 804 aa9.3□□□□□ -0.92
NEDD9-216ENST00000620854 ESF1Q9H501 851 aaKnown RBP9.3□□□□□ -0.92
NEDD9-216ENST00000620854 SLC4A3P48751 1232 aa9.29□□□□□ -0.92
NEDD9-216ENST00000620854 DNMBPQ6XZF7 1577 aa9.29□□□□□ -0.92
NEDD9-216ENST00000620854 MAP3K1Q13233 1512 aa9.28□□□□□ -0.92
NEDD9-216ENST00000620854 PLIN1O60240 522 aa9.28□□□□□ -0.92
NEDD9-216ENST00000620854 GRIN2BQ13224 1484 aa9.28□□□□□ -0.92
NEDD9-216ENST00000620854 ZNF644Q9H582 1327 aaPredicted RBP9.27□□□□□ -0.92
NEDD9-216ENST00000620854 CASKIN1Q8WXD9 1431 aa9.27□□□□□ -0.93
NEDD9-216ENST00000620854 IFT140Q96RY7 1462 aa9.27□□□□□ -0.93
NEDD9-216ENST00000620854 NCOA2Q15596 1464 aa9.26□□□□□ -0.93
NEDD9-216ENST00000620854 EIF5BO60841 1220 aaKnown RBP9.25□□□□□ -0.93
NEDD9-216ENST00000620854 PDE4AP27815 886 aa9.25□□□□□ -0.93
NEDD9-216ENST00000620854 MYOM3Q5VTT5 1437 aa9.25□□□□□ -0.93
NEDD9-216ENST00000620854 PTPN23Q9H3S7 1636 aa9.24□□□□□ -0.93
NEDD9-216ENST00000620854 CHGAP10645 457 aaKnown RBP9.24□□□□□ -0.93
NEDD9-216ENST00000620854 FYCO1Q9BQS8 1478 aa9.23□□□□□ -0.93
NEDD9-216ENST00000620854 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.23□□□□□ -0.93
NEDD9-216ENST00000620854 CDCA7LQ96GN5 454 aa9.23□□□□□ -0.93
NEDD9-216ENST00000620854 NCOA1Q15788 1441 aa9.23□□□□□ -0.93
NEDD9-216ENST00000620854 CANXP27824 592 aaKnown RBP9.23□□□□□ -0.93
NEDD9-216ENST00000620854 OSCARQ8IYS5 282 aa9.23□□□□□ -0.93
NEDD9-216ENST00000620854 PNISRQ8TF01 805 aaKnown RBP9.23□□□□□ -0.93
NEDD9-216ENST00000620854 CARD11Q9BXL7 1154 aa9.22□□□□□ -0.93
NEDD9-216ENST00000620854 RCAN3Q9UKA8 241 aa9.22□□□□□ -0.93
NEDD9-216ENST00000620854 BRPF3Q9ULD4 1205 aa9.22□□□□□ -0.93
NEDD9-216ENST00000620854 KDM5BQ9UGL1 1544 aa9.22□□□□□ -0.93
NEDD9-216ENST00000620854 PTPRGP23470 1445 aa9.21□□□□□ -0.93
NEDD9-216ENST00000620854 STAG3Q9UJ98 1225 aa9.21□□□□□ -0.94
NEDD9-216ENST00000620854 SMG6Q86US8 1419 aaKnown RBP9.2□□□□□ -0.94
NEDD9-216ENST00000620854 ABCA10Q8WWZ4 1543 aa9.2□□□□□ -0.94
NEDD9-216ENST00000620854 RRP1P56182 461 aaKnown RBP9.2□□□□□ -0.94
NEDD9-216ENST00000620854 ST20-MTHFSA0A0A6YYL1 179 aa9.2□□□□□ -0.94
NEDD9-216ENST00000620854 PKD2Q13563 968 aa9.2□□□□□ -0.94
NEDD9-216ENST00000620854 CC2D1BQ5T0F9 858 aaKnown RBP9.19□□□□□ -0.94
NEDD9-216ENST00000620854 URB2Q14146 1524 aaKnown RBP9.19□□□□□ -0.94
NEDD9-216ENST00000620854 DENND4BO75064 1496 aaPredicted RBP9.19□□□□□ -0.94
NEDD9-216ENST00000620854 USP47Q96K76 1375 aa9.19□□□□□ -0.94
NEDD9-216ENST00000620854 PLPPR3Q6T4P5 718 aa9.18□□□□□ -0.94
NEDD9-216ENST00000620854 CFAP43Q8NDM7 1665 aa9.18□□□□□ -0.94
NEDD9-216ENST00000620854 RGL3Q3MIN7 710 aa9.18□□□□□ -0.94
NEDD9-216ENST00000620854 KDM6BO15054 1643 aa9.17□□□□□ -0.94
NEDD9-216ENST00000620854 TCERG1O14776 1098 aaKnown RBP9.17□□□□□ -0.94
NEDD9-216ENST00000620854 BACH2Q9BYV9 841 aa9.17□□□□□ -0.94
NEDD9-216ENST00000620854 ANKRD30BQ9BXX2 1392 aa9.17□□□□□ -0.94
NEDD9-216ENST00000620854 DCAF11Q8TEB1 546 aa9.17□□□□□ -0.94
NEDD9-216ENST00000620854 SNAPC4Q5SXM2 1469 aa9.17□□□□□ -0.94
NEDD9-216ENST00000620854 EFCAB2Q5VUJ9 269 aa9.17□□□□□ -0.94
NEDD9-216ENST00000620854 ARXQ96QS3 562 aa9.16□□□□□ -0.94
NEDD9-216ENST00000620854 RGS3P49796 1198 aa9.16□□□□□ -0.94
NEDD9-216ENST00000620854 CRBNQ96SW2 442 aa9.15□□□□□ -0.94
NEDD9-216ENST00000620854 DHX29Q7Z478 1369 aaKnown RBP9.15□□□□□ -0.94
NEDD9-216ENST00000620854 RNF123Q5XPI4 1314 aa9.15□□□□□ -0.95
NEDD9-216ENST00000620854 C20orf194Q5TEA3 1177 aa9.14□□□□□ -0.95
NEDD9-216ENST00000620854 PPM1GO15355 546 aaPredicted RBP9.14□□□□□ -0.95
NEDD9-216ENST00000620854 TRHP20396 242 aaPredicted RBP9.14□□□□□ -0.95
NEDD9-216ENST00000620854 NFKBIBQ15653 356 aa9.13□□□□□ -0.95
NEDD9-216ENST00000620854 CYB5RLQ6IPT4 315 aa9.13□□□□□ -0.95
NEDD9-216ENST00000620854 FRAT1Q92837 279 aaPredicted RBP9.12□□□□□ -0.95
NEDD9-216ENST00000620854 SPATA31E1Q6ZUB1 1445 aa9.12□□□□□ -0.95
NEDD9-216ENST00000620854 GSE1Q14687 1217 aa9.12□□□□□ -0.95
NEDD9-216ENST00000620854 ARID4BQ4LE39 1312 aaPredicted RBP9.12□□□□□ -0.95
NEDD9-216ENST00000620854 SLC24A1O60721 1099 aa9.11□□□□□ -0.95
NEDD9-216ENST00000620854 RPRD2Q5VT52 1461 aaKnown RBP9.11□□□□□ -0.95
NEDD9-216ENST00000620854 EFCAB5A4FU69 1503 aa9.11□□□□□ -0.95
NEDD9-216ENST00000620854 CDK13Q14004 1512 aaKnown RBP9.11□□□□□ -0.95
NEDD9-216ENST00000620854 MAGI3Q5TCQ9 1506 aa9.11□□□□□ -0.95
NEDD9-216ENST00000620854 MYBBP1AQ9BQG0 1328 aaKnown RBP9.11□□□□□ -0.95
NEDD9-216ENST00000620854 PRG4Q92954 1404 aaPredicted RBP9.1□□□□□ -0.95
NEDD9-216ENST00000620854 FRAT2O75474 233 aaPredicted RBP9.1□□□□□ -0.95
NEDD9-216ENST00000620854 ZNF608Q9ULD9 1512 aaPredicted RBP9.1□□□□□ -0.95
NEDD9-216ENST00000620854 HNRNPMP52272 730 aaKnown RBP eCLIP9.1□□□□□ -0.95
NEDD9-216ENST00000620854 USP35Q9P2H5 1018 aa9.1□□□□□ -0.95
NEDD9-216ENST00000620854 SUPT6HQ7KZ85 1726 aaKnown RBP9.09□□□□□ -0.95
NEDD9-216ENST00000620854 ANKRD30AQ9BXX3 1397 aa9.09□□□□□ -0.95
NEDD9-216ENST00000620854 KIF15Q9NS87 1388 aa9.09□□□□□ -0.95
NEDD9-216ENST00000620854 NBPF1Q3BBV0 1214 aa9.09□□□□□ -0.95
NEDD9-216ENST00000620854 RSPH4AQ5TD94 716 aa9.09□□□□□ -0.95
NEDD9-216ENST00000620854 NLRP13Q86W25 1043 aa9.08□□□□□ -0.96
NEDD9-216ENST00000620854 CUL7Q14999 1698 aa9.08□□□□□ -0.96
NEDD9-216ENST00000620854 RALBP1Q15311 655 aa9.08□□□□□ -0.96
NEDD9-216ENST00000620854 KIAA0586Q9BVV6 1533 aa9.08□□□□□ -0.96
NEDD9-216ENST00000620854 PRDM2Q13029 1718 aa9.08□□□□□ -0.96
NEDD9-216ENST00000620854 NUP155O75694 1391 aa9.08□□□□□ -0.96
NEDD9-216ENST00000620854 DDRGK1Q96HY6 314 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms