RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 NISCHQ9Y2I1 1504 aa13□□□□□ -0.33
NEDD9-216ENST00000620854 DCAF8L2P0C7V8 631 aa12.1□□□□□ -0.47
NEDD9-216ENST00000620854 SHROOM4Q9ULL8 1493 aa11.93□□□□□ -0.5
NEDD9-216ENST00000620854 SUPT5HO00267 1087 aaKnown RBP11.89□□□□□ -0.51
NEDD9-216ENST00000620854 PCGF6Q9BYE7 350 aa11.62□□□□□ -0.55
NEDD9-216ENST00000620854 HRCP23327 699 aa11.57□□□□□ -0.56
NEDD9-216ENST00000620854 PPARGC1BQ86YN6 1023 aaKnown RBP11.57□□□□□ -0.56
NEDD9-216ENST00000620854 CHIC1Q5VXU3 224 aa11.42□□□□□ -0.58
NEDD9-216ENST00000620854 MYO15BQ96JP2 1530 aa11.37□□□□□ -0.59
NEDD9-216ENST00000620854 LOC105371045A0A1W2PR82 267 aa11.34□□□□□ -0.59
NEDD9-216ENST00000620854 EHMT2Q96KQ7 1210 aa11.19□□□□□ -0.62
NEDD9-216ENST00000620854 TRIM26Q12899 539 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-216ENST00000620854 FAM9AQ8IZU1 332 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-216ENST00000620854 ABCC9O60706 1549 aa11.04□□□□□ -0.64
NEDD9-216ENST00000620854 ZCCHC6Q5VYS8 1495 aaKnown RBP10.98□□□□□ -0.65
NEDD9-216ENST00000620854 SCAF1Q9H7N4 1312 aaKnown RBP10.95□□□□□ -0.66
NEDD9-216ENST00000620854 CCDC180Q9P1Z9 1646 aa10.93□□□□□ -0.66
NEDD9-216ENST00000620854 DCAF1Q9Y4B6 1507 aa10.92□□□□□ -0.66
NEDD9-216ENST00000620854 TRIM41Q8WV44 630 aa10.88□□□□□ -0.67
NEDD9-216ENST00000620854 PELP1Q8IZL8 1130 aaKnown RBP10.86□□□□□ -0.67
NEDD9-216ENST00000620854 ZEB1P37275 1124 aaPredicted RBP10.86□□□□□ -0.67
NEDD9-216ENST00000620854 TTBK1Q5TCY1 1321 aaPredicted RBP10.85□□□□□ -0.67
NEDD9-216ENST00000620854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.81□□□□□ -0.68
NEDD9-216ENST00000620854 CCER1Q8TC90 406 aaPredicted RBP10.76□□□□□ -0.69
NEDD9-216ENST00000620854 NEUROD1Q13562 356 aa10.74□□□□□ -0.69
NEDD9-216ENST00000620854 GTF3C3Q9Y5Q9 886 aa10.7□□□□□ -0.7
NEDD9-216ENST00000620854 PABPN1Q86U42 306 aaKnown RBP eCLIP10.69□□□□□ -0.7
NEDD9-216ENST00000620854 ACIN1Q9UKV3 1341 aaKnown RBP10.68□□□□□ -0.7
NEDD9-216ENST00000620854 YTHDC1Q96MU7 727 aaKnown RBP10.66□□□□□ -0.7
NEDD9-216ENST00000620854 DIEXFQ68CQ4 756 aaKnown RBP10.64□□□□□ -0.71
NEDD9-216ENST00000620854 CENPBP07199 599 aaPredicted RBP10.59□□□□□ -0.71
NEDD9-216ENST00000620854 SCRIBQ14160 1630 aa10.55□□□□□ -0.72
NEDD9-216ENST00000620854 RSF1Q96T23 1441 aaPredicted RBP10.53□□□□□ -0.72
NEDD9-216ENST00000620854 RB1CC1Q8TDY2 1594 aa10.49□□□□□ -0.73
NEDD9-216ENST00000620854 NACADO15069 1562 aa10.47□□□□□ -0.73
NEDD9-216ENST00000620854 RANGAP1P46060 587 aaPredicted RBP10.44□□□□□ -0.74
NEDD9-216ENST00000620854 APLP2Q06481 763 aa10.44□□□□□ -0.74
NEDD9-216ENST00000620854 HNRNPUL2Q1KMD3 747 aaKnown RBP10.43□□□□□ -0.74
NEDD9-216ENST00000620854 UBTFP17480 764 aaKnown RBP10.42□□□□□ -0.74
NEDD9-216ENST00000620854 MIER1Q8N108 512 aa10.4□□□□□ -0.74
NEDD9-216ENST00000620854 ZNF316A6NFI3 1004 aaPredicted RBP10.4□□□□□ -0.75
NEDD9-216ENST00000620854 CECR2Q9BXF3 1484 aa10.34□□□□□ -0.75
NEDD9-216ENST00000620854 MYT1Q01538 1121 aa10.34□□□□□ -0.75
NEDD9-216ENST00000620854 MROH2BQ7Z745 1585 aa10.24□□□□□ -0.77
NEDD9-216ENST00000620854 CEP162Q5TB80 1403 aa10.23□□□□□ -0.77
NEDD9-216ENST00000620854 CSRNP3Q8WYN3 585 aa10.21□□□□□ -0.77
NEDD9-216ENST00000620854 SOGA1O94964 1423 aa10.21□□□□□ -0.78
NEDD9-216ENST00000620854 CCDC88BA6NC98 1476 aa10.2□□□□□ -0.78
NEDD9-216ENST00000620854 ABCC8Q09428 1581 aa10.19□□□□□ -0.78
NEDD9-216ENST00000620854 ATP1B4Q9UN42 357 aaPredicted RBP10.19□□□□□ -0.78
NEDD9-216ENST00000620854 WIZO95785 1651 aa10.18□□□□□ -0.78
NEDD9-216ENST00000620854 BCANQ96GW7 911 aa10.17□□□□□ -0.78
NEDD9-216ENST00000620854 RUSC2Q8N2Y8 1516 aa10.15□□□□□ -0.78
NEDD9-216ENST00000620854 ITGAEP38570 1179 aa10.13□□□□□ -0.79
NEDD9-216ENST00000620854 SUPT16HQ9Y5B9 1047 aaKnown RBP10.12□□□□□ -0.79
NEDD9-216ENST00000620854 BAZ1AQ9NRL2 1556 aaPredicted RBP10.11□□□□□ -0.79
NEDD9-216ENST00000620854 TNIKQ9UKE5 1360 aa10.11□□□□□ -0.79
NEDD9-216ENST00000620854 ERICH6Q7L0X2 663 aa10.1□□□□□ -0.79
NEDD9-216ENST00000620854 WRNQ14191 1432 aaPredicted RBP eCLIP10.09□□□□□ -0.79
NEDD9-216ENST00000620854 KCNH8Q96L42 1107 aa10.08□□□□□ -0.8
NEDD9-216ENST00000620854 BAZ1BQ9UIG0 1483 aaKnown RBP10.05□□□□□ -0.8
NEDD9-216ENST00000620854 TSHZ2Q9NRE2 1034 aa10.04□□□□□ -0.8
NEDD9-216ENST00000620854 NEFLP07196 543 aa10.02□□□□□ -0.81
NEDD9-216ENST00000620854 CLIP1P30622 1438 aa10□□□□□ -0.81
NEDD9-216ENST00000620854 FKBP8Q14318 412 aa10□□□□□ -0.81
NEDD9-216ENST00000620854 HIRIP3Q9BW71 556 aaPredicted RBP10□□□□□ -0.81
NEDD9-216ENST00000620854 ANP32EQ9BTT0 268 aa9.98□□□□□ -0.81
NEDD9-216ENST00000620854 GOLGA3Q08378 1498 aa9.98□□□□□ -0.81
NEDD9-216ENST00000620854 DDX10Q13206 875 aaKnown RBP9.97□□□□□ -0.81
NEDD9-216ENST00000620854 KANK4Q5T7N3 995 aaPredicted RBP9.96□□□□□ -0.81
NEDD9-216ENST00000620854 TRIM52Q96A61 297 aa9.95□□□□□ -0.82
NEDD9-216ENST00000620854 FBLN2P98095 1184 aa9.93□□□□□ -0.82
NEDD9-216ENST00000620854 BCL11AQ9H165 835 aa9.92□□□□□ -0.82
NEDD9-216ENST00000620854 DHX57Q6P158 1386 aaKnown RBP9.91□□□□□ -0.82
NEDD9-216ENST00000620854 CNGB1Q14028 1251 aaPredicted RBP9.91□□□□□ -0.82
NEDD9-216ENST00000620854 SMARCA2P51531 1590 aa9.91□□□□□ -0.82
NEDD9-216ENST00000620854 EEA1Q15075 1411 aa9.9□□□□□ -0.82
NEDD9-216ENST00000620854 VPS8Q8N3P4 1428 aa9.89□□□□□ -0.83
NEDD9-216ENST00000620854 EIF4G1Q04637 1599 aaKnown RBP9.88□□□□□ -0.83
NEDD9-216ENST00000620854 SIN3AQ96ST3 1273 aa9.88□□□□□ -0.83
NEDD9-216ENST00000620854 RAPGEF2Q9Y4G8 1499 aa9.88□□□□□ -0.83
NEDD9-216ENST00000620854 CEP164Q9UPV0 1460 aa9.87□□□□□ -0.83
NEDD9-216ENST00000620854 TOP2AP11388 1531 aaKnown RBP9.87□□□□□ -0.83
NEDD9-216ENST00000620854 IRX6P78412 446 aaPredicted RBP9.87□□□□□ -0.83
NEDD9-216ENST00000620854 CLSPNQ9HAW4 1339 aa9.86□□□□□ -0.83
NEDD9-216ENST00000620854 RBM19Q9Y4C8 960 aaKnown RBP9.86□□□□□ -0.83
NEDD9-216ENST00000620854 SMARCA4P51532 1647 aa9.85□□□□□ -0.83
NEDD9-216ENST00000620854 FAM50AQ14320 339 aaKnown RBP9.84□□□□□ -0.83
NEDD9-216ENST00000620854 POLR3GLQ9BT43 218 aa9.84□□□□□ -0.83
NEDD9-216ENST00000620854 ATAD2BQ9ULI0 1458 aa9.83□□□□□ -0.84
NEDD9-216ENST00000620854 P3H3Q8IVL6 736 aa9.81□□□□□ -0.84
NEDD9-216ENST00000620854 KIF21BO75037 1637 aa9.78□□□□□ -0.84
NEDD9-216ENST00000620854 ANP32CO43423 234 aa9.78□□□□□ -0.84
NEDD9-216ENST00000620854 SYNJ1O43426 1573 aa9.77□□□□□ -0.85
NEDD9-216ENST00000620854 ERCC6Q03468 1493 aa9.75□□□□□ -0.85
NEDD9-216ENST00000620854 RAB3GAP2Q9H2M9 1393 aa9.75□□□□□ -0.85
NEDD9-216ENST00000620854 MYT1LQ9UL68 1186 aa9.75□□□□□ -0.85
NEDD9-216ENST00000620854 CCNB3Q8WWL7 1395 aa9.75□□□□□ -0.85
NEDD9-216ENST00000620854 HNRNPUQ00839 825 aaKnown RBP eCLIP9.74□□□□□ -0.85
NEDD9-216ENST00000620854 MSH5O43196 834 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms