RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 MAP3K4Q9Y6R4 1608 aa12.08□□□□□ -0.48
DEPDC4-208ENST00000549341 CHADLQ6NUI6 762 aa12.08□□□□□ -0.48
DEPDC4-208ENST00000549341 CARMIL1Q5VZK9 1371 aa12.07□□□□□ -0.48
DEPDC4-208ENST00000549341 IQGAP2Q13576 1575 aa12.07□□□□□ -0.48
DEPDC4-208ENST00000549341 KDM5BQ9UGL1 1544 aa12.06□□□□□ -0.48
DEPDC4-208ENST00000549341 WDR7Q9Y4E6 1490 aa12.06□□□□□ -0.48
DEPDC4-208ENST00000549341 DISP1Q96F81 1524 aa12.05□□□□□ -0.48
DEPDC4-208ENST00000549341 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
DEPDC4-208ENST00000549341 LMTK3Q96Q04 1460 aa12.02□□□□□ -0.48
DEPDC4-208ENST00000549341 CLCN6P51797 869 aa12.02□□□□□ -0.49
DEPDC4-208ENST00000549341 CD109Q6YHK3 1445 aa12.02□□□□□ -0.49
DEPDC4-208ENST00000549341 KIF21BO75037 1637 aa12.01□□□□□ -0.49
DEPDC4-208ENST00000549341 KCNH8Q96L42 1107 aa12□□□□□ -0.49
DEPDC4-208ENST00000549341 MAGI3Q5TCQ9 1506 aa11.98□□□□□ -0.49
DEPDC4-208ENST00000549341 PTPRMP28827 1452 aa11.98□□□□□ -0.49
DEPDC4-208ENST00000549341 KIAA0556O60303 1618 aa11.97□□□□□ -0.49
DEPDC4-208ENST00000549341 CD44P16070 742 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-208ENST00000549341 UGGT2Q9NYU1 1516 aa11.96□□□□□ -0.5
DEPDC4-208ENST00000549341 ARID3CA6NKF2 412 aa11.95□□□□□ -0.5
DEPDC4-208ENST00000549341 FARP1Q9Y4F1 1045 aaPredicted RBP11.95□□□□□ -0.5
DEPDC4-208ENST00000549341 PCF11O94913 1555 aaKnown RBP11.94□□□□□ -0.5
DEPDC4-208ENST00000549341 ARID4BQ4LE39 1312 aaPredicted RBP11.93□□□□□ -0.5
DEPDC4-208ENST00000549341 CFAP43Q8NDM7 1665 aa11.91□□□□□ -0.5
DEPDC4-208ENST00000549341 RAPGEF2Q9Y4G8 1499 aa11.9□□□□□ -0.5
DEPDC4-208ENST00000549341 HSPA2P54652 639 aa11.9□□□□□ -0.5
DEPDC4-208ENST00000549341 DISP3Q9P2K9 1392 aa11.9□□□□□ -0.5
DEPDC4-208ENST00000549341 RAPGEF3O95398 923 aa11.89□□□□□ -0.51
DEPDC4-208ENST00000549341 ARAP3Q8WWN8 1544 aa11.88□□□□□ -0.51
DEPDC4-208ENST00000549341 MADDQ8WXG6 1647 aa11.88□□□□□ -0.51
DEPDC4-208ENST00000549341 ADAMTSL3P82987 1691 aa11.87□□□□□ -0.51
DEPDC4-208ENST00000549341 ILDR2Q71H61 639 aa11.87□□□□□ -0.51
DEPDC4-208ENST00000549341 ABCA8O94911 1581 aa11.87□□□□□ -0.51
DEPDC4-208ENST00000549341 GOLGA3Q08378 1498 aa11.85□□□□□ -0.51
DEPDC4-208ENST00000549341 SOCS7O14512 581 aa11.84□□□□□ -0.51
DEPDC4-208ENST00000549341 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
DEPDC4-208ENST00000549341 CERKQ8TCT0 537 aa11.84□□□□□ -0.51
DEPDC4-208ENST00000549341 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
DEPDC4-208ENST00000549341 BCORL1Q5H9F3 1711 aa11.81□□□□□ -0.52
DEPDC4-208ENST00000549341 FRMPD1Q5SYB0 1578 aa11.8□□□□□ -0.52
DEPDC4-208ENST00000549341 RIMS1Q86UR5 1692 aaKnown RBP11.8□□□□□ -0.52
DEPDC4-208ENST00000549341 ARHGEF40Q8TER5 1519 aa11.8□□□□□ -0.52
DEPDC4-208ENST00000549341 PHLDB1Q86UU1 1377 aa11.79□□□□□ -0.52
DEPDC4-208ENST00000549341 NEO1Q92859 1461 aa11.79□□□□□ -0.52
DEPDC4-208ENST00000549341 P3H3Q8IVL6 736 aa11.79□□□□□ -0.52
DEPDC4-208ENST00000549341 ATP10BO94823 1461 aa11.77□□□□□ -0.52
DEPDC4-208ENST00000549341 MLECQ14165 292 aa11.77□□□□□ -0.53
DEPDC4-208ENST00000549341 ZNF579Q8NAF0 562 aaKnown RBP11.77□□□□□ -0.53
DEPDC4-208ENST00000549341 STAG3Q9UJ98 1225 aa11.77□□□□□ -0.53
DEPDC4-208ENST00000549341 ABCA9Q8IUA7 1624 aa11.77□□□□□ -0.53
DEPDC4-208ENST00000549341 SPATA31D1Q6ZQQ2 1576 aa11.75□□□□□ -0.53
DEPDC4-208ENST00000549341 FAM9AQ8IZU1 332 aaPredicted RBP11.75□□□□□ -0.53
DEPDC4-208ENST00000549341 POGZQ7Z3K3 1410 aa11.75□□□□□ -0.53
DEPDC4-208ENST00000549341 FANCAO15360 1455 aa11.75□□□□□ -0.53
DEPDC4-208ENST00000549341 AKNAQ7Z591 1439 aa11.74□□□□□ -0.53
DEPDC4-208ENST00000549341 DENND4BO75064 1496 aaPredicted RBP11.74□□□□□ -0.53
DEPDC4-208ENST00000549341 CTTNBP2Q8WZ74 1663 aa11.74□□□□□ -0.53
DEPDC4-208ENST00000549341 ZRANB1Q9UGI0 708 aa11.73□□□□□ -0.53
DEPDC4-208ENST00000549341 YEATS2Q9ULM3 1422 aa11.72□□□□□ -0.53
DEPDC4-208ENST00000549341 ZFYVE16Q7Z3T8 1539 aa11.7□□□□□ -0.54
DEPDC4-208ENST00000549341 FHOD3Q2V2M9 1422 aa11.69□□□□□ -0.54
DEPDC4-208ENST00000549341 RANGAP1P46060 587 aaPredicted RBP11.67□□□□□ -0.54
DEPDC4-208ENST00000549341 CREBZFQ9NS37 354 aa11.67□□□□□ -0.54
DEPDC4-208ENST00000549341 EFCAB5A4FU69 1503 aa11.66□□□□□ -0.54
DEPDC4-208ENST00000549341 NUP153P49790 1475 aaKnown RBP11.66□□□□□ -0.54
DEPDC4-208ENST00000549341 PRXQ9BXM0 1461 aa11.66□□□□□ -0.54
DEPDC4-208ENST00000549341 RAPGEF6Q8TEU7 1601 aa11.66□□□□□ -0.54
DEPDC4-208ENST00000549341 TTC37Q6PGP7 1564 aa11.66□□□□□ -0.54
DEPDC4-208ENST00000549341 ZMYM4Q5VZL5 1548 aa11.65□□□□□ -0.54
DEPDC4-208ENST00000549341 CEBPAP49715 358 aaPredicted RBP11.65□□□□□ -0.54
DEPDC4-208ENST00000549341 SIGLEC1Q9BZZ2 1709 aa11.65□□□□□ -0.54
DEPDC4-208ENST00000549341 RICTORQ6R327 1708 aa11.64□□□□□ -0.55
DEPDC4-208ENST00000549341 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
DEPDC4-208ENST00000549341 UHRF1BP1Q6BDS2 1440 aa11.63□□□□□ -0.55
DEPDC4-208ENST00000549341 CFAP74Q9C0B2 1584 aa11.62□□□□□ -0.55
DEPDC4-208ENST00000549341 FER1L4A9Z1Z3 1794 aa11.62□□□□□ -0.55
DEPDC4-208ENST00000549341 ARHGEF12Q9NZN5 1544 aa11.61□□□□□ -0.55
DEPDC4-208ENST00000549341 PLEKHD1A6NEE1 506 aa11.61□□□□□ -0.55
DEPDC4-208ENST00000549341 MAGI2Q86UL8 1455 aa11.61□□□□□ -0.55
DEPDC4-208ENST00000549341 C9orf84Q5VXU9 1444 aa11.6□□□□□ -0.55
DEPDC4-208ENST00000549341 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.6□□□□□ -0.55
DEPDC4-208ENST00000549341 HECW1Q76N89 1606 aa11.6□□□□□ -0.55
DEPDC4-208ENST00000549341 SAMD9Q5K651 1589 aa11.6□□□□□ -0.55
DEPDC4-208ENST00000549341 PLSCR2Q9NRY7 297 aa11.6□□□□□ -0.55
DEPDC4-208ENST00000549341 SCAPERQ9BY12 1400 aa11.6□□□□□ -0.55
DEPDC4-208ENST00000549341 PREX1Q8TCU6 1659 aa11.59□□□□□ -0.55
DEPDC4-208ENST00000549341 GALR2O43603 387 aaPredicted RBP11.59□□□□□ -0.55
DEPDC4-208ENST00000549341 ATP10AO60312 1499 aa11.57□□□□□ -0.56
DEPDC4-208ENST00000549341 CSRNP3Q8WYN3 585 aa11.56□□□□□ -0.56
DEPDC4-208ENST00000549341 MYT1LQ9UL68 1186 aa11.56□□□□□ -0.56
DEPDC4-208ENST00000549341 PTPRTO14522 1441 aa11.55□□□□□ -0.56
DEPDC4-208ENST00000549341 CDK13Q14004 1512 aaKnown RBP11.54□□□□□ -0.56
DEPDC4-208ENST00000549341 STRCQ7RTU9 1775 aa11.54□□□□□ -0.56
DEPDC4-208ENST00000549341 SPDYE4A6NLX3 237 aa11.53□□□□□ -0.56
DEPDC4-208ENST00000549341 UBAP1LF5GYI3 381 aa11.53□□□□□ -0.56
DEPDC4-208ENST00000549341 LTBP4Q8N2S1 1624 aa11.53□□□□□ -0.56
DEPDC4-208ENST00000549341 OTUD5Q96G74 571 aa11.52□□□□□ -0.57
DEPDC4-208ENST00000549341 ESF1Q9H501 851 aaKnown RBP11.52□□□□□ -0.57
DEPDC4-208ENST00000549341 PLCH2O75038 1416 aa11.52□□□□□ -0.57
DEPDC4-208ENST00000549341 NCOA1Q15788 1441 aa11.51□□□□□ -0.57
DEPDC4-208ENST00000549341 IQSEC2Q5JU85 1478 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms