RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
DEPDC4-208ENST00000549341 CHIC1Q5VXU3 224 aa21.95■■□□□ 1.1
DEPDC4-208ENST00000549341 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
DEPDC4-208ENST00000549341 PHF23Q9BUL5 403 aaPredicted RBP19.72■□□□□ 0.75
DEPDC4-208ENST00000549341 FOXD1Q16676 465 aa18.68■□□□□ 0.58
DEPDC4-208ENST00000549341 POTEDQ86YR6 584 aa17.83■□□□□ 0.44
DEPDC4-208ENST00000549341 MSH5O43196 834 aa17.74■□□□□ 0.43
DEPDC4-208ENST00000549341 NISCHQ9Y2I1 1504 aa17.42■□□□□ 0.38
DEPDC4-208ENST00000549341 PIAS4Q8N2W9 510 aaPredicted RBP17.41■□□□□ 0.38
DEPDC4-208ENST00000549341 PLPPR3Q6T4P5 718 aa17.37■□□□□ 0.37
DEPDC4-208ENST00000549341 PPP6R1Q9UPN7 881 aa17.14■□□□□ 0.33
DEPDC4-208ENST00000549341 ADRA2BP18089 450 aa17.09■□□□□ 0.33
DEPDC4-208ENST00000549341 ABCC9O60706 1549 aa16.3■□□□□ 0.2
DEPDC4-208ENST00000549341 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
DEPDC4-208ENST00000549341 SCAF1Q9H7N4 1312 aaKnown RBP15.81■□□□□ 0.12
DEPDC4-208ENST00000549341 MAPK8IP2Q13387 824 aaPredicted RBP15.78■□□□□ 0.12
DEPDC4-208ENST00000549341 CCDC180Q9P1Z9 1646 aa15.73■□□□□ 0.11
DEPDC4-208ENST00000549341 DNAJC5BQ9UF47 199 aa15.6■□□□□ 0.09
DEPDC4-208ENST00000549341 CACNB1Q02641 598 aaPredicted RBP15.41■□□□□ 0.06
DEPDC4-208ENST00000549341 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
DEPDC4-208ENST00000549341 DCAF8L1A6NGE4 600 aa15.21■□□□□ 0.03
DEPDC4-208ENST00000549341 PABPN1Q86U42 306 aaKnown RBP eCLIP15.14■□□□□ 0.01
DEPDC4-208ENST00000549341 PPP4R3CPQ6ZMV5 832 aa15.13■□□□□ 0.01
DEPDC4-208ENST00000549341 HOXD11P31277 338 aaPredicted RBP15.12■□□□□ 0.01
DEPDC4-208ENST00000549341 RNF39Q9H2S5 420 aa15.04■□□□□ -0
DEPDC4-208ENST00000549341 DCAF8L2P0C7V8 631 aa15.01□□□□□ -0.01
DEPDC4-208ENST00000549341 NACADO15069 1562 aa15.01□□□□□ -0.01
DEPDC4-208ENST00000549341 CNKSR2Q8WXI2 1034 aa14.98□□□□□ -0.01
DEPDC4-208ENST00000549341 RNF216Q9NWF9 866 aaPredicted RBP14.93□□□□□ -0.02
DEPDC4-208ENST00000549341 C1QBPQ07021 282 aaKnown RBP14.87□□□□□ -0.03
DEPDC4-208ENST00000549341 BICRAQ9NZM4 1560 aa14.79□□□□□ -0.04
DEPDC4-208ENST00000549341 UNC13AQ9UPW8 1703 aa14.76□□□□□ -0.05
DEPDC4-208ENST00000549341 CECR2Q9BXF3 1484 aa14.71□□□□□ -0.05
DEPDC4-208ENST00000549341 MYO15BQ96JP2 1530 aa14.63□□□□□ -0.07
DEPDC4-208ENST00000549341 CC2D2AQ9P2K1 1620 aa14.62□□□□□ -0.07
DEPDC4-208ENST00000549341 DNAJC5Q9H3Z4 198 aa14.59□□□□□ -0.07
DEPDC4-208ENST00000549341 SHROOM4Q9ULL8 1493 aa14.56□□□□□ -0.08
DEPDC4-208ENST00000549341 NCBP3Q53F19 620 aaKnown RBP14.54□□□□□ -0.08
DEPDC4-208ENST00000549341 EIF4G1Q04637 1599 aaKnown RBP14.51□□□□□ -0.09
DEPDC4-208ENST00000549341 SCRIBQ14160 1630 aa14.46□□□□□ -0.09
DEPDC4-208ENST00000549341 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.43□□□□□ -0.1
DEPDC4-208ENST00000549341 ZCCHC6Q5VYS8 1495 aaKnown RBP14.38□□□□□ -0.11
DEPDC4-208ENST00000549341 DCAF1Q9Y4B6 1507 aa14.31□□□□□ -0.12
DEPDC4-208ENST00000549341 NPM3O75607 178 aaKnown RBP14.2□□□□□ -0.14
DEPDC4-208ENST00000549341 CUX2O14529 1486 aa14.15□□□□□ -0.14
DEPDC4-208ENST00000549341 ERCC6Q03468 1493 aa14.13□□□□□ -0.15
DEPDC4-208ENST00000549341 U3KPZ7 1027 aaPredicted RBP14.02□□□□□ -0.17
DEPDC4-208ENST00000549341 CAPN15O75808 1086 aa13.97□□□□□ -0.17
DEPDC4-208ENST00000549341 DSG3P32926 999 aa13.95□□□□□ -0.18
DEPDC4-208ENST00000549341 POTEHQ6S545 545 aa13.93□□□□□ -0.18
DEPDC4-208ENST00000549341 TRIM41Q8WV44 630 aa13.93□□□□□ -0.18
DEPDC4-208ENST00000549341 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
DEPDC4-208ENST00000549341 NCAPD3P42695 1498 aa13.88□□□□□ -0.19
DEPDC4-208ENST00000549341 NESP48681 1621 aa13.86□□□□□ -0.19
DEPDC4-208ENST00000549341 ATAD2BQ9ULI0 1458 aa13.82□□□□□ -0.2
DEPDC4-208ENST00000549341 APLP2Q06481 763 aa13.77□□□□□ -0.21
DEPDC4-208ENST00000549341 SMARCA2P51531 1590 aa13.76□□□□□ -0.21
DEPDC4-208ENST00000549341 THOC2Q8NI27 1593 aaKnown RBP13.75□□□□□ -0.21
DEPDC4-208ENST00000549341 HMGXB3Q12766 1538 aa13.75□□□□□ -0.21
DEPDC4-208ENST00000549341 BAZ1BQ9UIG0 1483 aaKnown RBP13.7□□□□□ -0.22
DEPDC4-208ENST00000549341 SMARCA4P51532 1647 aa13.68□□□□□ -0.22
DEPDC4-208ENST00000549341 ZNF219Q9P2Y4 722 aaPredicted RBP13.66□□□□□ -0.22
DEPDC4-208ENST00000549341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.65□□□□□ -0.22
DEPDC4-208ENST00000549341 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
DEPDC4-208ENST00000549341 SLC4A2P04920 1241 aa13.63□□□□□ -0.23
DEPDC4-208ENST00000549341 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
DEPDC4-208ENST00000549341 LAMC3Q9Y6N6 1575 aa13.62□□□□□ -0.23
DEPDC4-208ENST00000549341 PDS5BQ9NTI5 1447 aa13.61□□□□□ -0.23
DEPDC4-208ENST00000549341 KIF21AQ7Z4S6 1674 aa13.58□□□□□ -0.24
DEPDC4-208ENST00000549341 KCNA4P22459 653 aa13.57□□□□□ -0.24
DEPDC4-208ENST00000549341 BAZ1AQ9NRL2 1556 aaPredicted RBP13.56□□□□□ -0.24
DEPDC4-208ENST00000549341 ABCB7O75027 752 aa13.55□□□□□ -0.24
DEPDC4-208ENST00000549341 MRC2Q9UBG0 1479 aa13.55□□□□□ -0.24
DEPDC4-208ENST00000549341 SAMD1Q6SPF0 538 aaPredicted RBP13.51□□□□□ -0.25
DEPDC4-208ENST00000549341 PEG3Q9GZU2 1588 aa13.49□□□□□ -0.25
DEPDC4-208ENST00000549341 WDR62O43379 1518 aa13.49□□□□□ -0.25
DEPDC4-208ENST00000549341 CADPSQ9ULU8 1353 aa13.47□□□□□ -0.25
DEPDC4-208ENST00000549341 MROH2BQ7Z745 1585 aa13.45□□□□□ -0.26
DEPDC4-208ENST00000549341 OSCARQ8IYS5 282 aa13.44□□□□□ -0.26
DEPDC4-208ENST00000549341 RBM42Q9BTD8 480 aaKnown RBP13.43□□□□□ -0.26
DEPDC4-208ENST00000549341 CEP164Q9UPV0 1460 aa13.42□□□□□ -0.26
DEPDC4-208ENST00000549341 FANCD2Q9BXW9 1451 aa13.36□□□□□ -0.27
DEPDC4-208ENST00000549341 RIMBP3CA6NJZ7 1639 aa13.3□□□□□ -0.28
DEPDC4-208ENST00000549341 RIMBP3BA6NNM3 1639 aa13.3□□□□□ -0.28
DEPDC4-208ENST00000549341 RIMBP3Q9UFD9 1639 aa13.3□□□□□ -0.28
DEPDC4-208ENST00000549341 ARHGEF11O15085 1522 aa13.26□□□□□ -0.29
DEPDC4-208ENST00000549341 URB2Q14146 1524 aaKnown RBP13.26□□□□□ -0.29
DEPDC4-208ENST00000549341 WIZO95785 1651 aa13.23□□□□□ -0.29
DEPDC4-208ENST00000549341 CFTRP13569 1480 aa13.23□□□□□ -0.29
DEPDC4-208ENST00000549341 MYCNP04198 464 aaPredicted RBP13.21□□□□□ -0.29
DEPDC4-208ENST00000549341 POLA2Q14181 598 aa13.2□□□□□ -0.3
DEPDC4-208ENST00000549341 CYB5RLQ6IPT4 315 aa13.2□□□□□ -0.3
DEPDC4-208ENST00000549341 CHRDL2Q6WN34 429 aa13.2□□□□□ -0.3
DEPDC4-208ENST00000549341 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
DEPDC4-208ENST00000549341 IFT140Q96RY7 1462 aa13.14□□□□□ -0.31
DEPDC4-208ENST00000549341 ARAP1Q96P48 1450 aa13.11□□□□□ -0.31
DEPDC4-208ENST00000549341 TOP2AP11388 1531 aaKnown RBP13.08□□□□□ -0.32
DEPDC4-208ENST00000549341 FBLN2P98095 1184 aa13.07□□□□□ -0.32
DEPDC4-208ENST00000549341 EIF4G3O43432 1585 aaKnown RBP13.07□□□□□ -0.32
DEPDC4-208ENST00000549341 TOPBP1Q92547 1522 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms