RNA–Protein interactions for RNA: ENST00000536999.1

CHD4-206, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 318 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-206ENST00000536999 POGZQ7Z3K3 1410 aa8.35□□□□□ -1.07
CHD4-206ENST00000536999 VPS8Q8N3P4 1428 aa8.35□□□□□ -1.07
CHD4-206ENST00000536999 MED1Q15648 1581 aaPredicted RBP8.35□□□□□ -1.07
CHD4-206ENST00000536999 PHLDB1Q86UU1 1377 aa8.34□□□□□ -1.07
CHD4-206ENST00000536999 NPM3O75607 178 aaKnown RBP8.33□□□□□ -1.08
CHD4-206ENST00000536999 CLIP1P30622 1438 aa8.32□□□□□ -1.08
CHD4-206ENST00000536999 MLECQ14165 292 aa8.32□□□□□ -1.08
CHD4-206ENST00000536999 MYT1LQ9UL68 1186 aa8.32□□□□□ -1.08
CHD4-206ENST00000536999 FANCAO15360 1455 aa8.32□□□□□ -1.08
CHD4-206ENST00000536999 IQGAP2Q13576 1575 aa8.31□□□□□ -1.08
CHD4-206ENST00000536999 PTPRTO14522 1441 aa8.31□□□□□ -1.08
CHD4-206ENST00000536999 DISP1Q96F81 1524 aa8.31□□□□□ -1.08
CHD4-206ENST00000536999 LTBP4Q8N2S1 1624 aa8.31□□□□□ -1.08
CHD4-206ENST00000536999 STRCQ7RTU9 1775 aa8.3□□□□□ -1.08
CHD4-206ENST00000536999 MIER1Q8N108 512 aa8.3□□□□□ -1.08
CHD4-206ENST00000536999 IGF1RP08069 1367 aa8.3□□□□□ -1.08
CHD4-206ENST00000536999 PREX1Q8TCU6 1659 aa8.3□□□□□ -1.08
CHD4-206ENST00000536999 UHRF1BP1Q6BDS2 1440 aa8.29□□□□□ -1.08
CHD4-206ENST00000536999 ARHGEF40Q8TER5 1519 aa8.29□□□□□ -1.08
CHD4-206ENST00000536999 HSPA1LP34931 641 aa8.28□□□□□ -1.08
CHD4-206ENST00000536999 AKNAQ7Z591 1439 aa8.28□□□□□ -1.08
CHD4-206ENST00000536999 TTC37Q6PGP7 1564 aa8.27□□□□□ -1.09
CHD4-206ENST00000536999 EHMT2Q96KQ7 1210 aa8.27□□□□□ -1.09
CHD4-206ENST00000536999 FRMPD1Q5SYB0 1578 aa8.27□□□□□ -1.09
CHD4-206ENST00000536999 NEO1Q92859 1461 aa8.26□□□□□ -1.09
CHD4-206ENST00000536999 FER1L4A9Z1Z3 1794 aa8.26□□□□□ -1.09
CHD4-206ENST00000536999 NEFLP07196 543 aa8.26□□□□□ -1.09
CHD4-206ENST00000536999 CEBPAP49715 358 aaPredicted RBP8.26□□□□□ -1.09
CHD4-206ENST00000536999 RNF216Q9NWF9 866 aaPredicted RBP8.26□□□□□ -1.09
CHD4-206ENST00000536999 CARMIL1Q5VZK9 1371 aa8.25□□□□□ -1.09
CHD4-206ENST00000536999 HOXD11P31277 338 aaPredicted RBP8.25□□□□□ -1.09
CHD4-206ENST00000536999 PIP4K2BP78356 416 aa8.25□□□□□ -1.09
CHD4-206ENST00000536999 YTHDC1Q96MU7 727 aaKnown RBP8.25□□□□□ -1.09
CHD4-206ENST00000536999 KIF27Q86VH2 1401 aa8.25□□□□□ -1.09
CHD4-206ENST00000536999 ANP32EQ9BTT0 268 aa8.24□□□□□ -1.09
CHD4-206ENST00000536999 KIAA0556O60303 1618 aa8.24□□□□□ -1.09
CHD4-206ENST00000536999 ARID3CA6NKF2 412 aa8.23□□□□□ -1.09
CHD4-206ENST00000536999 HNRNPUL2Q1KMD3 747 aaKnown RBP8.23□□□□□ -1.09
CHD4-206ENST00000536999 ERICH6BQ5W0A0 696 aa8.23□□□□□ -1.09
CHD4-206ENST00000536999 DENND4BO75064 1496 aaPredicted RBP8.23□□□□□ -1.09
CHD4-206ENST00000536999 ZNF335Q9H4Z2 1342 aaPredicted RBP8.23□□□□□ -1.09
CHD4-206ENST00000536999 UGGT2Q9NYU1 1516 aa8.23□□□□□ -1.09
CHD4-206ENST00000536999 ZFYVE16Q7Z3T8 1539 aa8.21□□□□□ -1.1
CHD4-206ENST00000536999 SUPT16HQ9Y5B9 1047 aaKnown RBP8.21□□□□□ -1.1
CHD4-206ENST00000536999 ABCA9Q8IUA7 1624 aa8.21□□□□□ -1.1
CHD4-206ENST00000536999 EFCAB5A4FU69 1503 aa8.2□□□□□ -1.1
CHD4-206ENST00000536999 MAP3K1Q13233 1512 aa8.2□□□□□ -1.1
CHD4-206ENST00000536999 DCAF8L1A6NGE4 600 aa8.2□□□□□ -1.1
CHD4-206ENST00000536999 CCER2I3L3R5 266 aa8.2□□□□□ -1.1
CHD4-206ENST00000536999 TOM1O60784 492 aa8.2□□□□□ -1.1
CHD4-206ENST00000536999 NCOA1Q15788 1441 aa8.2□□□□□ -1.1
CHD4-206ENST00000536999 RRBP1Q9P2E9 1410 aaKnown RBP8.2□□□□□ -1.1
CHD4-206ENST00000536999 ABCA8O94911 1581 aa8.19□□□□□ -1.1
CHD4-206ENST00000536999 FHOD3Q2V2M9 1422 aa8.19□□□□□ -1.1
CHD4-206ENST00000536999 ARHGEF12Q9NZN5 1544 aa8.19□□□□□ -1.1
CHD4-206ENST00000536999 DHX57Q6P158 1386 aaKnown RBP8.18□□□□□ -1.1
CHD4-206ENST00000536999 SIGLEC1Q9BZZ2 1709 aa8.17□□□□□ -1.1
CHD4-206ENST00000536999 SETD1BQ9UPS6 1966 aaKnown RBP8.17□□□□□ -1.1
CHD4-206ENST00000536999 RICTORQ6R327 1708 aa8.17□□□□□ -1.1
CHD4-206ENST00000536999 ZMYM4Q5VZL5 1548 aa8.16□□□□□ -1.1
CHD4-206ENST00000536999 MAGI2Q86UL8 1455 aa8.16□□□□□ -1.1
CHD4-206ENST00000536999 CCNB3Q8WWL7 1395 aa8.16□□□□□ -1.1
CHD4-206ENST00000536999 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.15□□□□□ -1.1
CHD4-206ENST00000536999 NCKAP5LQ9HCH0 1330 aa8.15□□□□□ -1.1
CHD4-206ENST00000536999 ESF1Q9H501 851 aaKnown RBP8.15□□□□□ -1.1
CHD4-206ENST00000536999 PRXQ9BXM0 1461 aa8.14□□□□□ -1.11
CHD4-206ENST00000536999 ATP10BO94823 1461 aa8.13□□□□□ -1.11
CHD4-206ENST00000536999 C9orf84Q5VXU9 1444 aa8.13□□□□□ -1.11
CHD4-206ENST00000536999 ANP32CO43423 234 aa8.13□□□□□ -1.11
CHD4-206ENST00000536999 RGS17Q9UGC6 210 aaPredicted RBP8.13□□□□□ -1.11
CHD4-206ENST00000536999 CAMSAP1Q5T5Y3 1602 aa8.13□□□□□ -1.11
CHD4-206ENST00000536999 ATP10AO60312 1499 aa8.13□□□□□ -1.11
CHD4-206ENST00000536999 TRAPPC8Q9Y2L5 1435 aa8.12□□□□□ -1.11
CHD4-206ENST00000536999 CFAP74Q9C0B2 1584 aa8.12□□□□□ -1.11
CHD4-206ENST00000536999 HECW1Q76N89 1606 aa8.11□□□□□ -1.11
CHD4-206ENST00000536999 TSHZ2Q9NRE2 1034 aa8.11□□□□□ -1.11
CHD4-206ENST00000536999 PKD2Q13563 968 aa8.1□□□□□ -1.11
CHD4-206ENST00000536999 RAPGEF2Q9Y4G8 1499 aa8.1□□□□□ -1.11
CHD4-206ENST00000536999 POTEAQ6S8J7 498 aa8.09□□□□□ -1.11
CHD4-206ENST00000536999 PTPRKQ15262 1439 aa8.09□□□□□ -1.11
CHD4-206ENST00000536999 SETD5Q9C0A6 1442 aa8.09□□□□□ -1.11
CHD4-206ENST00000536999 SRCAPQ6ZRS2 3230 aa8.08□□□□□ -1.12
CHD4-206ENST00000536999 ERICH6Q7L0X2 663 aa8.08□□□□□ -1.12
CHD4-206ENST00000536999 CDK11AQ9UQ88 783 aaPredicted RBP8.08□□□□□ -1.12
CHD4-206ENST00000536999 C3P01024 1663 aa8.08□□□□□ -1.12
CHD4-206ENST00000536999 SCAPERQ9BY12 1400 aa8.07□□□□□ -1.12
CHD4-206ENST00000536999 FANCIQ9NVI1 1328 aa8.06□□□□□ -1.12
CHD4-206ENST00000536999 CPS1P31327 1500 aa8.06□□□□□ -1.12
CHD4-206ENST00000536999 P3H3Q8IVL6 736 aa8.05□□□□□ -1.12
CHD4-206ENST00000536999 SETD1AO15047 1707 aaKnown RBP8.05□□□□□ -1.12
CHD4-206ENST00000536999 PLA2R1Q13018 1463 aa8.05□□□□□ -1.12
CHD4-206ENST00000536999 PLEKHD1A6NEE1 506 aa8.04□□□□□ -1.12
CHD4-206ENST00000536999 SLC4A1APQ9BWU0 796 aaKnown RBP8.04□□□□□ -1.12
CHD4-206ENST00000536999 CNTLNQ9NXG0 1405 aa8.03□□□□□ -1.12
CHD4-206ENST00000536999 TCOF1Q13428 1488 aaKnown RBP8.03□□□□□ -1.12
CHD4-206ENST00000536999 FKBP8Q14318 412 aa8.03□□□□□ -1.12
CHD4-206ENST00000536999 UPF1Q92900 1129 aaKnown RBP eCLIP8.03□□□□□ -1.12
CHD4-206ENST00000536999 NPATQ14207 1427 aa8.03□□□□□ -1.12
CHD4-206ENST00000536999 SHANK2Q9UPX8 1470 aa8.02□□□□□ -1.13
CHD4-206ENST00000536999 RAB3GAP2Q9H2M9 1393 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms