RNA–Protein interactions for RNA: ENST00000536999.1

CHD4-206, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 318 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-206ENST00000536999 AEBP2Q6ZN18 517 aaPredicted RBP12.62□□□□□ -0.39
CHD4-206ENST00000536999 CHIC1Q5VXU3 224 aa12.14□□□□□ -0.47
CHD4-206ENST00000536999 NISCHQ9Y2I1 1504 aa11.96□□□□□ -0.5
CHD4-206ENST00000536999 ABCC9O60706 1549 aa11.65□□□□□ -0.54
CHD4-206ENST00000536999 DNAJC5BQ9UF47 199 aa11.44□□□□□ -0.58
CHD4-206ENST00000536999 DNAJC5Q9H3Z4 198 aa10.99□□□□□ -0.65
CHD4-206ENST00000536999 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
CHD4-206ENST00000536999 RB1CC1Q8TDY2 1594 aa10.79□□□□□ -0.68
CHD4-206ENST00000536999 PABPN1Q86U42 306 aaKnown RBP eCLIP10.77□□□□□ -0.69
CHD4-206ENST00000536999 PHF23Q9BUL5 403 aaPredicted RBP10.7□□□□□ -0.7
CHD4-206ENST00000536999 SENP3Q9H4L4 574 aaPredicted RBP10.65□□□□□ -0.7
CHD4-206ENST00000536999 CECR2Q9BXF3 1484 aa10.56□□□□□ -0.72
CHD4-206ENST00000536999 NACADO15069 1562 aa10.55□□□□□ -0.72
CHD4-206ENST00000536999 DCAF8L2P0C7V8 631 aa10.48□□□□□ -0.73
CHD4-206ENST00000536999 UNC13AQ9UPW8 1703 aa10.45□□□□□ -0.74
CHD4-206ENST00000536999 CC2D2AQ9P2K1 1620 aa10.45□□□□□ -0.74
CHD4-206ENST00000536999 BICRAQ9NZM4 1560 aa10.44□□□□□ -0.74
CHD4-206ENST00000536999 TRIM41Q8WV44 630 aa10.32□□□□□ -0.76
CHD4-206ENST00000536999 CUX2O14529 1486 aa10.29□□□□□ -0.76
CHD4-206ENST00000536999 EIF4G1Q04637 1599 aaKnown RBP10.28□□□□□ -0.76
CHD4-206ENST00000536999 SHROOM4Q9ULL8 1493 aa10.28□□□□□ -0.76
CHD4-206ENST00000536999 MYO15BQ96JP2 1530 aa10.17□□□□□ -0.78
CHD4-206ENST00000536999 ERCC6Q03468 1493 aa10.15□□□□□ -0.78
CHD4-206ENST00000536999 SCRIBQ14160 1630 aa10.03□□□□□ -0.8
CHD4-206ENST00000536999 FOXD1Q16676 465 aa9.96□□□□□ -0.82
CHD4-206ENST00000536999 PLPPR3Q6T4P5 718 aa9.83□□□□□ -0.84
CHD4-206ENST00000536999 DCAF1Q9Y4B6 1507 aa9.82□□□□□ -0.84
CHD4-206ENST00000536999 NESP48681 1621 aa9.81□□□□□ -0.84
CHD4-206ENST00000536999 THOC2Q8NI27 1593 aaKnown RBP9.8□□□□□ -0.84
CHD4-206ENST00000536999 ZCCHC6Q5VYS8 1495 aaKnown RBP9.78□□□□□ -0.84
CHD4-206ENST00000536999 SMARCA2P51531 1590 aa9.75□□□□□ -0.85
CHD4-206ENST00000536999 NCAPD3P42695 1498 aa9.75□□□□□ -0.85
CHD4-206ENST00000536999 OSCARQ8IYS5 282 aa9.74□□□□□ -0.85
CHD4-206ENST00000536999 TRHP20396 242 aaPredicted RBP9.71□□□□□ -0.86
CHD4-206ENST00000536999 BAZ1AQ9NRL2 1556 aaPredicted RBP9.7□□□□□ -0.86
CHD4-206ENST00000536999 ATAD2BQ9ULI0 1458 aa9.64□□□□□ -0.87
CHD4-206ENST00000536999 PDS5BQ9NTI5 1447 aa9.64□□□□□ -0.87
CHD4-206ENST00000536999 KIF21AQ7Z4S6 1674 aa9.63□□□□□ -0.87
CHD4-206ENST00000536999 RIMBP3CA6NJZ7 1639 aa9.63□□□□□ -0.87
CHD4-206ENST00000536999 RIMBP3BA6NNM3 1639 aa9.63□□□□□ -0.87
CHD4-206ENST00000536999 RIMBP3Q9UFD9 1639 aa9.63□□□□□ -0.87
CHD4-206ENST00000536999 LAMC3Q9Y6N6 1575 aa9.63□□□□□ -0.87
CHD4-206ENST00000536999 HMGXB3Q12766 1538 aa9.61□□□□□ -0.87
CHD4-206ENST00000536999 MRC2Q9UBG0 1479 aa9.58□□□□□ -0.88
CHD4-206ENST00000536999 CYB5RLQ6IPT4 315 aa9.57□□□□□ -0.88
CHD4-206ENST00000536999 ARHGEF11O15085 1522 aa9.56□□□□□ -0.88
CHD4-206ENST00000536999 WDR62O43379 1518 aa9.55□□□□□ -0.88
CHD4-206ENST00000536999 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
CHD4-206ENST00000536999 ILDR1Q86SU0 546 aaPredicted RBP9.54□□□□□ -0.88
CHD4-206ENST00000536999 ADRA2BP18089 450 aa9.5□□□□□ -0.89
CHD4-206ENST00000536999 PPP6R1Q9UPN7 881 aa9.49□□□□□ -0.89
CHD4-206ENST00000536999 HRCP23327 699 aa9.48□□□□□ -0.89
CHD4-206ENST00000536999 PELP1Q8IZL8 1130 aaKnown RBP9.46□□□□□ -0.9
CHD4-206ENST00000536999 SMARCA4P51532 1647 aa9.45□□□□□ -0.9
CHD4-206ENST00000536999 CADPSQ9ULU8 1353 aa9.44□□□□□ -0.9
CHD4-206ENST00000536999 CEP164Q9UPV0 1460 aa9.42□□□□□ -0.9
CHD4-206ENST00000536999 ARAP1Q96P48 1450 aa9.41□□□□□ -0.9
CHD4-206ENST00000536999 ZEB1P37275 1124 aaPredicted RBP9.37□□□□□ -0.91
CHD4-206ENST00000536999 SUPT5HO00267 1087 aaKnown RBP9.35□□□□□ -0.91
CHD4-206ENST00000536999 FANCD2Q9BXW9 1451 aa9.34□□□□□ -0.91
CHD4-206ENST00000536999 PEG3Q9GZU2 1588 aa9.34□□□□□ -0.91
CHD4-206ENST00000536999 PIAS4Q8N2W9 510 aaPredicted RBP9.31□□□□□ -0.92
CHD4-206ENST00000536999 RSF1Q96T23 1441 aaPredicted RBP9.31□□□□□ -0.92
CHD4-206ENST00000536999 URB2Q14146 1524 aaKnown RBP9.28□□□□□ -0.92
CHD4-206ENST00000536999 ZNF608Q9ULD9 1512 aaPredicted RBP9.28□□□□□ -0.92
CHD4-206ENST00000536999 FBLN2P98095 1184 aa9.27□□□□□ -0.93
CHD4-206ENST00000536999 MYT1Q01538 1121 aa9.26□□□□□ -0.93
CHD4-206ENST00000536999 IFT140Q96RY7 1462 aa9.26□□□□□ -0.93
CHD4-206ENST00000536999 CHD1O14646 1710 aa9.22□□□□□ -0.93
CHD4-206ENST00000536999 TRIM26Q12899 539 aaPredicted RBP9.21□□□□□ -0.94
CHD4-206ENST00000536999 MROH2BQ7Z745 1585 aa9.2□□□□□ -0.94
CHD4-206ENST00000536999 MSH5O43196 834 aa9.2□□□□□ -0.94
CHD4-206ENST00000536999 EIF4G3O43432 1585 aaKnown RBP9.2□□□□□ -0.94
CHD4-206ENST00000536999 PCGF6Q9BYE7 350 aa9.19□□□□□ -0.94
CHD4-206ENST00000536999 CFTRP13569 1480 aa9.19□□□□□ -0.94
CHD4-206ENST00000536999 KDM4FA0A1W2PPD8 638 aa9.15□□□□□ -0.94
CHD4-206ENST00000536999 AQRO60306 1485 aaKnown RBP eCLIP9.14□□□□□ -0.95
CHD4-206ENST00000536999 GAPVD1Q14C86 1478 aa9.11□□□□□ -0.95
CHD4-206ENST00000536999 CLASP1Q7Z460 1538 aa9.1□□□□□ -0.95
CHD4-206ENST00000536999 TOPBP1Q92547 1522 aa9.09□□□□□ -0.95
CHD4-206ENST00000536999 SYNJ1O43426 1573 aa9.08□□□□□ -0.96
CHD4-206ENST00000536999 FBXO41Q8TF61 875 aa9.08□□□□□ -0.96
CHD4-206ENST00000536999 CHMP7Q8WUX9 453 aaPredicted RBP9.08□□□□□ -0.96
CHD4-206ENST00000536999 LMTK3Q96Q04 1460 aa9.06□□□□□ -0.96
CHD4-206ENST00000536999 ERCC6L2Q5T890 1561 aa9.06□□□□□ -0.96
CHD4-206ENST00000536999 WIZO95785 1651 aa9.06□□□□□ -0.96
CHD4-206ENST00000536999 SNAPC4Q5SXM2 1469 aa9.03□□□□□ -0.96
CHD4-206ENST00000536999 ABCC8Q09428 1581 aa9.03□□□□□ -0.96
CHD4-206ENST00000536999 TARBP1Q13395 1621 aaKnown RBP9.02□□□□□ -0.97
CHD4-206ENST00000536999 HECW2Q9P2P5 1572 aa9.01□□□□□ -0.97
CHD4-206ENST00000536999 TDRD9Q8NDG6 1382 aaKnown RBP9□□□□□ -0.97
CHD4-206ENST00000536999 DNMBPQ6XZF7 1577 aa8.99□□□□□ -0.97
CHD4-206ENST00000536999 FAM69CQ0P6D2 419 aa8.99□□□□□ -0.97
CHD4-206ENST00000536999 PRDM2Q13029 1718 aa8.99□□□□□ -0.97
CHD4-206ENST00000536999 KIF13AQ9H1H9 1805 aa8.98□□□□□ -0.97
CHD4-206ENST00000536999 SOCS7O14512 581 aa8.98□□□□□ -0.97
CHD4-206ENST00000536999 KDM6BO15054 1643 aa8.98□□□□□ -0.97
CHD4-206ENST00000536999 MAGI1Q96QZ7 1491 aaPredicted RBP8.97□□□□□ -0.97
CHD4-206ENST00000536999 SYNJ2O15056 1496 aa8.96□□□□□ -0.98
CHD4-206ENST00000536999 POLA1P09884 1462 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms