RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CFAP43Q8NDM7 1665 aa4.62□□□□□ -1.67
USP53-205ENST00000509769 GOLGA6L4A6NEF3 574 aa4.62□□□□□ -1.67
USP53-205ENST00000509769 HSP90B1P14625 803 aaKnown RBP4.62□□□□□ -1.67
USP53-205ENST00000509769 GPS2Q13227 327 aa4.61□□□□□ -1.67
USP53-205ENST00000509769 CARMIL2Q6F5E8 1435 aa4.61□□□□□ -1.67
USP53-205ENST00000509769 KIAA2012Q0VF49 1180 aa4.61□□□□□ -1.67
USP53-205ENST00000509769 ZRSR1Q15695 479 aaKnown RBP4.61□□□□□ -1.67
USP53-205ENST00000509769 PRG4Q92954 1404 aaPredicted RBP4.61□□□□□ -1.67
USP53-205ENST00000509769 GRIN2AQ12879 1464 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 FHAD1B1AJZ9 1412 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 DEKP35659 375 aaKnown RBP4.6□□□□□ -1.67
USP53-205ENST00000509769 CHMP4BQ9H444 224 aaKnown RBP4.6□□□□□ -1.67
USP53-205ENST00000509769 NUP160Q12769 1436 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 HTATSF1O43719 755 aaKnown RBP4.6□□□□□ -1.67
USP53-205ENST00000509769 CWC15Q9P013 229 aaKnown RBP4.6□□□□□ -1.67
USP53-205ENST00000509769 POLA1P09884 1462 aaPredicted RBP4.6□□□□□ -1.67
USP53-205ENST00000509769 PTPRTO14522 1441 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 FKBP8Q14318 412 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 CSPP1Q1MSJ5 1256 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 TEX35Q5T0J7 233 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 CCDC136Q96JN2 1154 aa4.6□□□□□ -1.67
USP53-205ENST00000509769 SHROOM2Q13796 1616 aa4.59□□□□□ -1.67
USP53-205ENST00000509769 USP8P40818 1118 aa4.59□□□□□ -1.67
USP53-205ENST00000509769 TPM2P07951 284 aa4.58□□□□□ -1.68
USP53-205ENST00000509769 UBTFP17480 764 aaKnown RBP4.58□□□□□ -1.68
USP53-205ENST00000509769 NBR1Q14596 966 aa4.58□□□□□ -1.68
USP53-205ENST00000509769 PTPRMP28827 1452 aa4.58□□□□□ -1.68
USP53-205ENST00000509769 TDRD9Q8NDG6 1382 aaKnown RBP4.58□□□□□ -1.68
USP53-205ENST00000509769 PRKCSHP14314 528 aaPredicted RBP4.57□□□□□ -1.68
USP53-205ENST00000509769 SYAP1Q96A49 352 aaPredicted RBP4.57□□□□□ -1.68
USP53-205ENST00000509769 PBRM1Q86U86 1689 aa4.57□□□□□ -1.68
USP53-205ENST00000509769 BCANQ96GW7 911 aa4.57□□□□□ -1.68
USP53-205ENST00000509769 PES1O00541 588 aaKnown RBP4.57□□□□□ -1.68
USP53-205ENST00000509769 NCBP3Q53F19 620 aaKnown RBP4.57□□□□□ -1.68
USP53-205ENST00000509769 NPM2Q86SE8 214 aaKnown RBP4.57□□□□□ -1.68
USP53-205ENST00000509769 VSIG10Q8N0Z9 540 aa4.57□□□□□ -1.68
USP53-205ENST00000509769 ARID3AQ99856 593 aa4.57□□□□□ -1.68
USP53-205ENST00000509769 DCAF8L1A6NGE4 600 aa4.57□□□□□ -1.68
USP53-205ENST00000509769 FANCAO15360 1455 aa4.57□□□□□ -1.68
USP53-205ENST00000509769 PHF14O94880 888 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 CASC1Q6TDU7 716 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 YEATS2Q9ULM3 1422 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 SCAF1Q9H7N4 1312 aaKnown RBP4.56□□□□□ -1.68
USP53-205ENST00000509769 AXDND1Q5T1B0 1012 aaPredicted RBP4.56□□□□□ -1.68
USP53-205ENST00000509769 TOM1O60784 492 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 HMMRO75330 724 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 PPP4R2Q9NY27 417 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 SETSIPP0DME0 302 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 SSR1P43307 286 aaKnown RBP4.56□□□□□ -1.68
USP53-205ENST00000509769 JPH4Q96JJ6 628 aa4.56□□□□□ -1.68
USP53-205ENST00000509769 ESF1Q9H501 851 aaKnown RBP4.56□□□□□ -1.68
USP53-205ENST00000509769 MS4A1P11836 297 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.55□□□□□ -1.68
USP53-205ENST00000509769 UHRF1BP1LA0JNW5 1464 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 GBP4Q96PP9 640 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 ACBD3Q9H3P7 528 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 RBM28Q9NW13 759 aaKnown RBP4.55□□□□□ -1.68
USP53-205ENST00000509769 CHMP3Q9Y3E7 222 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 PTPRGP23470 1445 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 RRP9O43818 475 aaKnown RBP4.55□□□□□ -1.68
USP53-205ENST00000509769 TAF7LQ5H9L4 462 aa4.55□□□□□ -1.68
USP53-205ENST00000509769 ABCC2Q92887 1545 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 TSPOAP1O95153 1857 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 TCERG1O14776 1098 aaKnown RBP4.54□□□□□ -1.68
USP53-205ENST00000509769 DHX8Q14562 1220 aaKnown RBP4.54□□□□□ -1.68
USP53-205ENST00000509769 C14orf37Q86TY3 774 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 MAGI3Q5TCQ9 1506 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 UBAP1LF5GYI3 381 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 FGD5Q6ZNL6 1462 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 TNIKQ9UKE5 1360 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 CDR1P51861 262 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 ADAMTS12P58397 1594 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 PDE4CQ08493 712 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 MYH16Q9H6N6 1097 aa4.54□□□□□ -1.68
USP53-205ENST00000509769 AKNAQ7Z591 1439 aa4.53□□□□□ -1.68
USP53-205ENST00000509769 CAVIN1Q6NZI2 390 aaKnown RBP4.53□□□□□ -1.68
USP53-205ENST00000509769 UBE2Q2Q8WVN8 375 aa4.53□□□□□ -1.68
USP53-205ENST00000509769 SKOR2Q2VWA4 1001 aaPredicted RBP4.53□□□□□ -1.68
USP53-205ENST00000509769 FBXO3Q9UK99 471 aa4.53□□□□□ -1.68
USP53-205ENST00000509769 ISY1Q9ULR0 285 aaKnown RBP4.53□□□□□ -1.68
USP53-205ENST00000509769 UHRF1BP1Q6BDS2 1440 aa4.53□□□□□ -1.68
USP53-205ENST00000509769 HAP1P54257 671 aaPredicted RBP4.53□□□□□ -1.68
USP53-205ENST00000509769 ASXL2Q76L83 1435 aa4.53□□□□□ -1.68
USP53-205ENST00000509769 TPM4P67936 248 aa4.53□□□□□ -1.68
USP53-205ENST00000509769 CALD1Q05682 793 aaKnown RBP4.53□□□□□ -1.68
USP53-205ENST00000509769 ZRSR2Q15696 482 aaKnown RBP4.53□□□□□ -1.68
USP53-205ENST00000509769 PTPRKQ15262 1439 aa4.53□□□□□ -1.69
USP53-205ENST00000509769 ABCA10Q8WWZ4 1543 aa4.52□□□□□ -1.69
USP53-205ENST00000509769 TPM3P06753 285 aa4.52□□□□□ -1.69
USP53-205ENST00000509769 ERICH3Q5RHP9 1530 aa4.52□□□□□ -1.69
USP53-205ENST00000509769 RDXP35241 583 aaKnown RBP4.52□□□□□ -1.69
USP53-205ENST00000509769 CCDC9Q9Y3X0 531 aaKnown RBP4.52□□□□□ -1.69
USP53-205ENST00000509769 PAIP2Q9BPZ3 127 aaKnown RBP4.52□□□□□ -1.69
USP53-205ENST00000509769 RAD54L2Q9Y4B4 1467 aa4.52□□□□□ -1.69
USP53-205ENST00000509769 NEXNQ0ZGT2 675 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 PDCL2Q8N4E4 241 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 CCDC191Q8NCU4 936 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 CAGE1Q8TC20 777 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 INCENPQ9NQS7 918 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 MED1Q15648 1581 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms