RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	CCDC7	Q96M83	1385 aa		13.96	□□□□□ -0.17
TRAPPC12-223	ENST00000497597	KDM2A	Q9Y2K7	1162 aa		13.96	□□□□□ -0.17
TRAPPC12-223	ENST00000497597	ARHGAP35	Q9NRY4	1499 aa		13.96	□□□□□ -0.17
TRAPPC12-223	ENST00000497597	KIF27	Q86VH2	1401 aa		13.95	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	CUX2	O14529	1486 aa		13.94	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	CDCA7L	Q96GN5	454 aa		13.94	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	CRBN	Q96SW2	442 aa		13.94	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	CCDC18	Q5T9S5	1454 aa		13.93	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.92	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	CADPS	Q9ULU8	1353 aa		13.91	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	NBPF8	Q3BBV2	869 aa		13.91	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	PNN	Q9H307	717 aa	Known RBP	13.91	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.9	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	POGK	Q9P215	609 aa		13.9	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	ARID3A	Q99856	593 aa		13.9	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	NES	P48681	1621 aa		13.9	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	FHAD1	B1AJZ9	1412 aa		13.9	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	SMG6	Q86US8	1419 aa	Known RBP	13.9	□□□□□ -0.18
TRAPPC12-223	ENST00000497597	MPHOSPH9	Q99550	1183 aa		13.89	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	LRRC9	Q6ZRR7	1453 aa		13.89	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.88	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	HSP90AA1	P07900	732 aa	Known RBP	13.88	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	FHOD3	Q2V2M9	1422 aa		13.88	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	FAM43A	Q8N2R8	423 aa		13.86	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	PRX	Q9BXM0	1461 aa		13.86	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	WDR62	O43379	1518 aa		13.86	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	CC2D1B	Q5T0F9	858 aa	Known RBP	13.86	□□□□□ -0.19
TRAPPC12-223	ENST00000497597		A0A0U1RQG5	324 aa	Predicted RBP	13.85	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	MS4A1	P11836	297 aa		13.85	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	PNISR	Q8TF01	805 aa	Known RBP	13.84	□□□□□ -0.19
TRAPPC12-223	ENST00000497597	PODXL2	Q9NZ53	605 aa		13.83	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	C20orf194	Q5TEA3	1177 aa		13.83	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	CARMIL1	Q5VZK9	1371 aa		13.82	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	UACA	Q9BZF9	1416 aa		13.82	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	AQR	O60306	1485 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	CANX	P27824	592 aa	Known RBP	13.81	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	CARD11	Q9BXL7	1154 aa		13.81	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	PDS5B	Q9NTI5	1447 aa		13.81	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.8	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	FMN1	Q68DA7	1419 aa		13.8	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	FAM161A	Q3B820	660 aa		13.79	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	TIAM1	Q13009	1591 aa		13.78	□□□□□ -0.2
TRAPPC12-223	ENST00000497597	FANCD2	Q9BXW9	1451 aa		13.76	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	BECN1	Q14457	450 aa		13.76	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	L1TD1	Q5T7N2	865 aa	Known RBP	13.76	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	MRC2	Q9UBG0	1479 aa		13.76	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	PTPRK	Q15262	1439 aa		13.76	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	FGD6	Q6ZV73	1430 aa		13.76	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	PANK2	Q9BZ23	570 aa		13.75	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	GOLGA6L3	A6NEY3	463 aa		13.75	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	TRIM44	Q96DX7	344 aa	Predicted RBP	13.75	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	ERICH3	Q5RHP9	1530 aa		13.73	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	NCOA1	Q15788	1441 aa		13.73	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	ST20-MTHFS	A0A0A6YYL1	179 aa		13.73	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	ZBTB7C	A1YPR0	619 aa		13.73	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	RNF123	Q5XPI4	1314 aa		13.73	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	UPF2	Q9HAU5	1272 aa	Known RBP	13.72	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	BIVM-ERCC5	R4GMW8	1640 aa		13.72	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	RGL3	Q3MIN7	710 aa		13.72	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	USP47	Q96K76	1375 aa		13.71	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	DNMBP	Q6XZF7	1577 aa		13.71	□□□□□ -0.21
TRAPPC12-223	ENST00000497597	URB2	Q14146	1524 aa	Known RBP	13.71	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	NAIP	Q13075	1403 aa		13.71	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	IGF1R	P08069	1367 aa		13.7	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	WDR43	Q15061	677 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.69	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.68	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.68	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	HFM1	A2PYH4	1435 aa		13.68	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	NLRP13	Q86W25	1043 aa		13.67	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	NEUROD2	Q15784	382 aa		13.66	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	CCDC146	Q8IYE0	955 aa		13.66	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	MYH16	Q9H6N6	1097 aa		13.66	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	ERCC6	Q03468	1493 aa		13.66	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	KTN1	Q86UP2	1357 aa	Known RBP	13.66	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	RBM10	P98175	930 aa	Known RBP	13.66	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	C8orf34	Q49A92	452 aa		13.65	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	PKD2	Q13563	968 aa		13.65	□□□□□ -0.22
TRAPPC12-223	ENST00000497597	XRCC6	P12956	609 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	3e-7	■□□□□ 10.3
TRAPPC12-223	ENST00000497597	TARBP1	Q13395	1621 aa	Known RBP	13.64	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	NCOA2	Q15596	1464 aa		13.64	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	RALBP1	Q15311	655 aa		13.64	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	FOXD4L1	Q9NU39	408 aa		13.64	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	MAP3K1	Q13233	1512 aa		13.64	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	TOP2B	Q02880	1626 aa		13.63	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	PDE3B	Q13370	1112 aa		13.63	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	TOPBP1	Q92547	1522 aa		13.63	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	SEC24B	O95487	1268 aa		13.63	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	KIF15	Q9NS87	1388 aa		13.63	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	ZNF644	Q9H582	1327 aa	Predicted RBP	13.61	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	CUX1	P39880	1505 aa		13.61	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	RRP9	O43818	475 aa	Known RBP	13.61	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	DHX29	Q7Z478	1369 aa	Known RBP	13.6	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	FAM13B	Q9NYF5	915 aa		13.6	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	COG6	Q9Y2V7	657 aa		13.6	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	KDM5B	Q9UGL1	1544 aa		13.6	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	PCF11	O94913	1555 aa	Known RBP	13.6	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	MFAP1	P55081	439 aa	Known RBP	13.6	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	CLUAP1	Q96AJ1	413 aa		13.59	□□□□□ -0.23
TRAPPC12-223	ENST00000497597	NCL	P19338	710 aa	Known RBP	13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms