RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, humanhuman

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC12-223ENST00000497597 NISCHQ9Y2I1 1504 aa18.88■□□□□ 0.61
TRAPPC12-223ENST00000497597 PPARGC1BQ86YN6 1023 aaKnown RBP17.91■□□□□ 0.46
TRAPPC12-223ENST00000497597 SUPT5HO00267 1087 aaKnown RBP17.85■□□□□ 0.45
TRAPPC12-223ENST00000497597 PCGF6Q9BYE7 350 aa17.8■□□□□ 0.44
TRAPPC12-223ENST00000497597 HRCP23327 699 aa17.79■□□□□ 0.44
TRAPPC12-223ENST00000497597 SHROOM4Q9ULL8 1493 aa17.74■□□□□ 0.43
TRAPPC12-223ENST00000497597 PELP1Q8IZL8 1130 aaKnown RBP17.33■□□□□ 0.36
TRAPPC12-223ENST00000497597 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
TRAPPC12-223ENST00000497597 MYO15BQ96JP2 1530 aa17.08■□□□□ 0.32
TRAPPC12-223ENST00000497597 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
TRAPPC12-223ENST00000497597 LOC105371045A0A1W2PR82 267 aa17.03■□□□□ 0.32
TRAPPC12-223ENST00000497597 DCAF8L2P0C7V8 631 aa17.02■□□□□ 0.32
TRAPPC12-223ENST00000497597 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
TRAPPC12-223ENST00000497597 EHMT2Q96KQ7 1210 aa16.98■□□□□ 0.31
TRAPPC12-223ENST00000497597 TRIM26Q12899 539 aaPredicted RBP16.8■□□□□ 0.28
TRAPPC12-223ENST00000497597 FAM9AQ8IZU1 332 aaPredicted RBP16.69■□□□□ 0.26
TRAPPC12-223ENST00000497597 ZEB1P37275 1124 aaPredicted RBP16.66■□□□□ 0.26
TRAPPC12-223ENST00000497597 GTF3C3Q9Y5Q9 886 aa16.64■□□□□ 0.25
TRAPPC12-223ENST00000497597 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
TRAPPC12-223ENST00000497597 MYT1Q01538 1121 aa16.63■□□□□ 0.25
TRAPPC12-223ENST00000497597 YTHDC1Q96MU7 727 aaKnown RBP16.57■□□□□ 0.24
TRAPPC12-223ENST00000497597 ACIN1Q9UKV3 1341 aaKnown RBP16.54■□□□□ 0.24
TRAPPC12-223ENST00000497597 TTBK1Q5TCY1 1321 aaPredicted RBP16.54■□□□□ 0.24
TRAPPC12-223ENST00000497597 CENPBP07199 599 aaPredicted RBP16.52■□□□□ 0.24
TRAPPC12-223ENST00000497597 CCER1Q8TC90 406 aaPredicted RBP16.46■□□□□ 0.23
TRAPPC12-223ENST00000497597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
TRAPPC12-223ENST00000497597 DCAF1Q9Y4B6 1507 aa16.38■□□□□ 0.21
TRAPPC12-223ENST00000497597 DIEXFQ68CQ4 756 aaKnown RBP16.34■□□□□ 0.21
TRAPPC12-223ENST00000497597 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
TRAPPC12-223ENST00000497597 BCL11AQ9H165 835 aa15.98■□□□□ 0.15
TRAPPC12-223ENST00000497597 ABCC9O60706 1549 aa15.92■□□□□ 0.14
TRAPPC12-223ENST00000497597 MIER1Q8N108 512 aa15.88■□□□□ 0.13
TRAPPC12-223ENST00000497597 ZNF316A6NFI3 1004 aaPredicted RBP15.85■□□□□ 0.13
TRAPPC12-223ENST00000497597 ZCCHC6Q5VYS8 1495 aaKnown RBP15.83■□□□□ 0.12
TRAPPC12-223ENST00000497597 BCANQ96GW7 911 aa15.82■□□□□ 0.12
TRAPPC12-223ENST00000497597 HNRNPUL2Q1KMD3 747 aaKnown RBP15.79■□□□□ 0.12
TRAPPC12-223ENST00000497597 NACADO15069 1562 aa15.78■□□□□ 0.12
TRAPPC12-223ENST00000497597 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
TRAPPC12-223ENST00000497597 ANP32EQ9BTT0 268 aa15.69■□□□□ 0.1
TRAPPC12-223ENST00000497597 RB1CC1Q8TDY2 1594 aa15.69■□□□□ 0.1
TRAPPC12-223ENST00000497597 RANGAP1P46060 587 aaPredicted RBP15.67■□□□□ 0.1
TRAPPC12-223ENST00000497597 UBTFP17480 764 aaKnown RBP15.6■□□□□ 0.09
TRAPPC12-223ENST00000497597 TSHZ2Q9NRE2 1034 aa15.6■□□□□ 0.09
TRAPPC12-223ENST00000497597 SUPT16HQ9Y5B9 1047 aaKnown RBP15.6■□□□□ 0.09
TRAPPC12-223ENST00000497597 UNC13AQ9UPW8 1703 aa15.57■□□□□ 0.08
TRAPPC12-223ENST00000497597 ERICH6Q7L0X2 663 aa15.52■□□□□ 0.07
TRAPPC12-223ENST00000497597 PRKCSHP14314 528 aaPredicted RBP15.47■□□□□ 0.07
TRAPPC12-223ENST00000497597 ITGAEP38570 1179 aa15.45■□□□□ 0.06
TRAPPC12-223ENST00000497597 FKBP8Q14318 412 aa15.44■□□□□ 0.06
TRAPPC12-223ENST00000497597 APLP2Q06481 763 aa15.43■□□□□ 0.06
TRAPPC12-223ENST00000497597 NEFLP07196 543 aa15.41■□□□□ 0.06
TRAPPC12-223ENST00000497597 KCNH8Q96L42 1107 aa15.33■□□□□ 0.05
TRAPPC12-223ENST00000497597 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.04
TRAPPC12-223ENST00000497597 RBM19Q9Y4C8 960 aaKnown RBP15.26■□□□□ 0.03
TRAPPC12-223ENST00000497597 RSF1Q96T23 1441 aaPredicted RBP15.25■□□□□ 0.03
TRAPPC12-223ENST00000497597 TRIM52Q96A61 297 aa15.24■□□□□ 0.03
TRAPPC12-223ENST00000497597 IRX6P78412 446 aaPredicted RBP15.21■□□□□ 0.03
TRAPPC12-223ENST00000497597 CLSPNQ9HAW4 1339 aa15.19■□□□□ 0.02
TRAPPC12-223ENST00000497597 CEP162Q5TB80 1403 aa15.16■□□□□ 0.02
TRAPPC12-223ENST00000497597 DDX10Q13206 875 aaKnown RBP15.15■□□□□ 0.02
TRAPPC12-223ENST00000497597 HIRIP3Q9BW71 556 aaPredicted RBP15.15■□□□□ 0.02
TRAPPC12-223ENST00000497597 MSH5O43196 834 aa15.14■□□□□ 0.01
TRAPPC12-223ENST00000497597 ANO8Q9HCE9 1232 aaPredicted RBP15.13■□□□□ 0.01
TRAPPC12-223ENST00000497597 SCRIBQ14160 1630 aa15.13■□□□□ 0.01
TRAPPC12-223ENST00000497597 NBR1Q14596 966 aa15.13■□□□□ 0.01
TRAPPC12-223ENST00000497597 CCDC136Q96JN2 1154 aa15.08■□□□□ 0
TRAPPC12-223ENST00000497597 CDK11AQ9UQ88 783 aaPredicted RBP15.05■□□□□ 0
TRAPPC12-223ENST00000497597 RTN4Q9NQC3 1192 aaKnown RBP15.02■□□□□ -0
TRAPPC12-223ENST00000497597 DEKP35659 375 aaKnown RBP15.01□□□□□ -0.01
TRAPPC12-223ENST00000497597 CNGB1Q14028 1251 aaPredicted RBP14.99□□□□□ -0.01
TRAPPC12-223ENST00000497597 SOGA1O94964 1423 aa14.96□□□□□ -0.02
TRAPPC12-223ENST00000497597 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.94□□□□□ -0.02
TRAPPC12-223ENST00000497597 SALL2Q9Y467 1007 aaPredicted RBP14.94□□□□□ -0.02
TRAPPC12-223ENST00000497597 ANP32CO43423 234 aa14.92□□□□□ -0.02
TRAPPC12-223ENST00000497597 HNRNPUQ00839 825 aaKnown RBP eCLIP14.91□□□□□ -0.02
TRAPPC12-223ENST00000497597 RTL5Q5HYW3 569 aaPredicted RBP14.89□□□□□ -0.03
TRAPPC12-223ENST00000497597 TNIKQ9UKE5 1360 aa14.89□□□□□ -0.03
TRAPPC12-223ENST00000497597 CCDC88BA6NC98 1476 aa14.88□□□□□ -0.03
TRAPPC12-223ENST00000497597 CECR2Q9BXF3 1484 aa14.88□□□□□ -0.03
TRAPPC12-223ENST00000497597 ATP1B4Q9UN42 357 aaPredicted RBP14.88□□□□□ -0.03
TRAPPC12-223ENST00000497597 WRNQ14191 1432 aaPredicted RBP eCLIP14.86□□□□□ -0.03
TRAPPC12-223ENST00000497597 ABCC8Q09428 1581 aa14.85□□□□□ -0.03
TRAPPC12-223ENST00000497597 SENP3-EIF4A1A0A087X0R7 540 aa14.83□□□□□ -0.03
TRAPPC12-223ENST00000497597 SIN3AQ96ST3 1273 aa14.82□□□□□ -0.04
TRAPPC12-223ENST00000497597 RUSC2Q8N2Y8 1516 aa14.82□□□□□ -0.04
TRAPPC12-223ENST00000497597 EIF5BO60841 1220 aaKnown RBP14.82□□□□□ -0.04
TRAPPC12-223ENST00000497597 B4GALNT3Q6L9W6 998 aa14.81□□□□□ -0.04
TRAPPC12-223ENST00000497597 CLIP1P30622 1438 aa14.8□□□□□ -0.04
TRAPPC12-223ENST00000497597 DHX57Q6P158 1386 aaKnown RBP14.79□□□□□ -0.04
TRAPPC12-223ENST00000497597 EIF4G1Q04637 1599 aaKnown RBP14.78□□□□□ -0.04
TRAPPC12-223ENST00000497597 NPM2Q86SE8 214 aaKnown RBP14.78□□□□□ -0.04
TRAPPC12-223ENST00000497597 IL27Q8NEV9 243 aa14.78□□□□□ -0.04
TRAPPC12-223ENST00000497597 FAM50AQ14320 339 aaKnown RBP14.77□□□□□ -0.04
TRAPPC12-223ENST00000497597 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
TRAPPC12-223ENST00000497597 KANK4Q5T7N3 995 aaPredicted RBP14.73□□□□□ -0.05
TRAPPC12-223ENST00000497597 MROH2BQ7Z745 1585 aa14.72□□□□□ -0.05
TRAPPC12-223ENST00000497597 NOP58Q9Y2X3 529 aaKnown RBP14.72□□□□□ -0.05
TRAPPC12-223ENST00000497597 FAM9BQ8IZU0 186 aa14.72□□□□□ -0.05
TRAPPC12-223ENST00000497597 PEG3Q9GZU2 1588 aa14.72□□□□□ -0.05
TRAPPC12-223ENST00000497597 GOLGA3Q08378 1498 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms