RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, humanhuman

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC12-223ENST00000497597 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.58□□□□□ -0.555e-11■■■■■ 246.7
TRAPPC12-223ENST00000497597 FMR1Q06787 632 aaKnown RBP eCLIP12.05□□□□□ -0.482e-31■■■■■ 109.2
TRAPPC12-223ENST00000497597 SF3B1O75533 1304 aaKnown RBP eCLIP10.93□□□□□ -0.665e-6■■■■■ 68.9
TRAPPC12-223ENST00000497597 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.99□□□□□ -0.496e-6■■■■■ 55.1
TRAPPC12-223ENST00000497597 RBM15Q96T37 977 aaKnown RBP eCLIP11.29□□□□□ -0.62e-7■■■■■ 39.2
TRAPPC12-223ENST00000497597 DKC1O60832 514 aaKnown RBP eCLIP11.28□□□□□ -0.63e-14■■■■■ 34.3
TRAPPC12-223ENST00000497597 SRSF7Q16629 238 aaKnown RBP eCLIP8.71□□□□□ -1.014e-9■■■■■ 29.7
TRAPPC12-223ENST00000497597 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.65□□□□□ -0.71e-6■■■■■ 28.9
TRAPPC12-223ENST00000497597 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.8□□□□□ -0.682e-6■■■■■ 28.1
TRAPPC12-223ENST00000497597 QKIQ96PU8 341 aaKnown RBP eCLIP10.61□□□□□ -0.718e-8■■■■□ 26.5
TRAPPC12-223ENST00000497597 HNRNPKP61978 463 aaKnown RBP eCLIP9.24□□□□□ -0.935e-7■■■■□ 26.5
TRAPPC12-223ENST00000497597 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.47□□□□□ -0.253e-6■■■■□ 26.4
TRAPPC12-223ENST00000497597 HNRNPMP52272 730 aaKnown RBP eCLIP13.25□□□□□ -0.291e-6■■■■□ 26.1
TRAPPC12-223ENST00000497597 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.67□□□□□ -0.72e-7■■■■□ 25.2
TRAPPC12-223ENST00000497597 SF3B4Q15427 424 aaKnown RBP eCLIP10.83□□□□□ -0.683e-11■■■■□ 25
TRAPPC12-223ENST00000497597 TARDBPQ13148 414 aaKnown RBP eCLIP10.25□□□□□ -0.779e-9■■■■□ 24.6
TRAPPC12-223ENST00000497597 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.56□□□□□ -0.564e-7■■■■□ 24.4
TRAPPC12-223ENST00000497597 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.4□□□□□ -0.584e-6■■■■□ 24.2
TRAPPC12-223ENST00000497597 YWHAGP61981 247 aaKnown RBP eCLIP11.21□□□□□ -0.629e-7■■■■□ 23.9
TRAPPC12-223ENST00000497597 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.44□□□□□ -1.061e-6■■■■□ 23.9
TRAPPC12-223ENST00000497597 PPIGQ13427 754 aaKnown RBP eCLIP10.26□□□□□ -0.776e-7■■■■□ 21.9
TRAPPC12-223ENST00000497597 TRA2AQ13595 282 aaKnown RBP eCLIP9.36□□□□□ -0.911e-5■■■■□ 21.3
TRAPPC12-223ENST00000497597 HNRNPLP14866 589 aaKnown RBP eCLIP10.82□□□□□ -0.682e-11■■■■□ 19.4
TRAPPC12-223ENST00000497597 KHSRPQ92945 711 aaKnown RBP eCLIP10.49□□□□□ -0.736e-11■■■□□ 18.6
TRAPPC12-223ENST00000497597 EIF4G2P78344 907 aaKnown RBP eCLIP14.26□□□□□ -0.132e-9■■■□□ 17.1
TRAPPC12-223ENST00000497597 EFTUD2Q15029 972 aaKnown RBP eCLIP11.23□□□□□ -0.612e-7■■■□□ 16.9
TRAPPC12-223ENST00000497597 SRSF9Q13242 221 aaKnown RBP eCLIP8.51□□□□□ -1.054e-7■■■□□ 16.1
TRAPPC12-223ENST00000497597 RBM22Q9NW64 420 aaKnown RBP eCLIP10.51□□□□□ -0.732e-6■■■□□ 15.6
TRAPPC12-223ENST00000497597 HLTFQ14527 1009 aaKnown RBP eCLIP11.96□□□□□ -0.57e-7■■■□□ 15.5
TRAPPC12-223ENST00000497597 SAFB2Q14151 953 aaKnown RBP eCLIP13.09□□□□□ -0.319e-7■■■□□ 15.2
TRAPPC12-223ENST00000497597 HNRNPCP07910 306 aaKnown RBP eCLIP11.38□□□□□ -0.592e-6■■■□□ 14.6
TRAPPC12-223ENST00000497597 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.52□□□□□ -0.579e-8■■□□□ 13.8
TRAPPC12-223ENST00000497597 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.86□□□□□ -0.838e-6■■□□□ 13.2
TRAPPC12-223ENST00000497597 U2AF2P26368 475 aaKnown RBP eCLIP13□□□□□ -0.332e-7■■□□□ 13
TRAPPC12-223ENST00000497597 NIPBLQ6KC79 2804 aaeCLIP7.59□□□□□ -1.192e-7■■□□□ 12.9
TRAPPC12-223ENST00000497597 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.8□□□□□ -0.527e-8■■□□□ 12.3
TRAPPC12-223ENST00000497597 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.22□□□□□ -0.772e-6■□□□□ 11.2
TRAPPC12-223ENST00000497597 ZRANB2O95218 330 aaKnown RBP eCLIP12.24□□□□□ -0.452e-6■□□□□ 11.2
TRAPPC12-223ENST00000497597 SF3A3Q12874 501 aaKnown RBP eCLIP12.16□□□□□ -0.463e-9■□□□□ 10.4
TRAPPC12-223ENST00000497597 XRCC6P12956 609 aaKnown RBP eCLIP13.64□□□□□ -0.233e-7■□□□□ 10.3
TRAPPC12-223ENST00000497597 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.42□□□□□ -0.421e-6■□□□□ 10.1
TRAPPC12-223ENST00000497597 AGGF1Q8N302 714 aaeCLIP11.38□□□□□ -0.591e-8■□□□□ 9.3
TRAPPC12-223ENST00000497597 U2AF1Q01081 240 aaKnown RBP eCLIP13.19□□□□□ -0.32e-6■□□□□ 9.2
TRAPPC12-223ENST00000497597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.55□□□□□ -0.241e-7■□□□□ 8.7
Retrieved 44 of 44 RNA–protein pairs in 11.3 ms