RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 BRPF3Q9ULD4 1205 aa10.26□□□□□ -0.77
BRCA1-201ENST00000352993 DAXXQ9UER7 740 aaPredicted RBP10.26□□□□□ -0.77
BRCA1-201ENST00000352993 GRIN2AQ12879 1464 aa10.25□□□□□ -0.77
BRCA1-201ENST00000352993 KIF27Q86VH2 1401 aa10.24□□□□□ -0.77
BRCA1-201ENST00000352993 GAPVD1Q14C86 1478 aa10.24□□□□□ -0.77
BRCA1-201ENST00000352993 PPM1GO15355 546 aaPredicted RBP10.23□□□□□ -0.77
BRCA1-201ENST00000352993 UBE2Q2Q8WVN8 375 aa10.23□□□□□ -0.77
BRCA1-201ENST00000352993 PPRC1Q5VV67 1664 aaKnown RBP10.22□□□□□ -0.77
BRCA1-201ENST00000352993 NUDCQ9Y266 331 aa10.22□□□□□ -0.77
BRCA1-201ENST00000352993 ERCC6L2Q5T890 1561 aa10.21□□□□□ -0.77
BRCA1-201ENST00000352993 LRRC9Q6ZRR7 1453 aa10.21□□□□□ -0.77
BRCA1-201ENST00000352993 USP35Q9P2H5 1018 aa10.21□□□□□ -0.77
BRCA1-201ENST00000352993 CHIC2Q9UKJ5 165 aa10.21□□□□□ -0.78
BRCA1-201ENST00000352993 TIAM1Q13009 1591 aa10.2□□□□□ -0.78
BRCA1-201ENST00000352993 FHAD1B1AJZ9 1412 aa10.2□□□□□ -0.78
BRCA1-201ENST00000352993 RRP7BPQ9NSQ0 103 aa10.2□□□□□ -0.78
BRCA1-201ENST00000352993 CNTLNQ9NXG0 1405 aa10.19□□□□□ -0.78
BRCA1-201ENST00000352993 PDE4AP27815 886 aa10.19□□□□□ -0.78
BRCA1-201ENST00000352993 C11orf95C9JLR9 678 aaPredicted RBP10.19□□□□□ -0.78
BRCA1-201ENST00000352993 GLI2P10070 1586 aa10.18□□□□□ -0.78
BRCA1-201ENST00000352993 GSE1Q14687 1217 aa10.18□□□□□ -0.78
BRCA1-201ENST00000352993 CCDC18Q5T9S5 1454 aa10.18□□□□□ -0.78
BRCA1-201ENST00000352993 DIP2BQ9P265 1576 aa10.18□□□□□ -0.78
BRCA1-201ENST00000352993 ADCY10Q96PN6 1610 aa10.18□□□□□ -0.78
BRCA1-201ENST00000352993 SLC4A3P48751 1232 aa10.17□□□□□ -0.78
BRCA1-201ENST00000352993 TCERG1O14776 1098 aaKnown RBP10.17□□□□□ -0.78
BRCA1-201ENST00000352993 ZNF326Q5BKZ1 582 aaKnown RBP10.17□□□□□ -0.78
BRCA1-201ENST00000352993 TMC1Q8TDI8 760 aa10.17□□□□□ -0.78
BRCA1-201ENST00000352993 FOXD1Q16676 465 aa10.16□□□□□ -0.78
BRCA1-201ENST00000352993 EXOC6Q8TAG9 804 aa10.16□□□□□ -0.78
BRCA1-201ENST00000352993 CCDC7Q96M83 1385 aa10.15□□□□□ -0.78
BRCA1-201ENST00000352993 L3MBTL2Q969R5 705 aa10.15□□□□□ -0.78
BRCA1-201ENST00000352993 SMG6Q86US8 1419 aaKnown RBP10.14□□□□□ -0.79
BRCA1-201ENST00000352993 FRAT1Q92837 279 aaPredicted RBP10.14□□□□□ -0.79
BRCA1-201ENST00000352993 UACAQ9BZF9 1416 aa10.14□□□□□ -0.79
BRCA1-201ENST00000352993 DDRGK1Q96HY6 314 aa10.14□□□□□ -0.79
BRCA1-201ENST00000352993 MTUS2Q5JR59 1369 aa10.13□□□□□ -0.79
BRCA1-201ENST00000352993 NFKBIBQ15653 356 aa10.13□□□□□ -0.79
BRCA1-201ENST00000352993 WASHC2CQ9Y4E1 1318 aa10.13□□□□□ -0.79
BRCA1-201ENST00000352993 MAP3K4Q9Y6R4 1608 aa10.12□□□□□ -0.79
BRCA1-201ENST00000352993 BACH2Q9BYV9 841 aa10.12□□□□□ -0.79
BRCA1-201ENST00000352993 SKAP1Q86WV1 359 aa10.11□□□□□ -0.79
BRCA1-201ENST00000352993 KIF7Q2M1P5 1343 aa10.11□□□□□ -0.79
BRCA1-201ENST00000352993 CARMIL1Q5VZK9 1371 aa10.1□□□□□ -0.79
BRCA1-201ENST00000352993 ARXQ96QS3 562 aa10.1□□□□□ -0.79
BRCA1-201ENST00000352993 FHOD3Q2V2M9 1422 aa10.09□□□□□ -0.79
BRCA1-201ENST00000352993 RRP1P56182 461 aaKnown RBP10.09□□□□□ -0.79
BRCA1-201ENST00000352993 UHRF1BP1LA0JNW5 1464 aa10.09□□□□□ -0.79
BRCA1-201ENST00000352993 RCAN3Q9UKA8 241 aa10.09□□□□□ -0.79
BRCA1-201ENST00000352993 FMN1Q68DA7 1419 aa10.09□□□□□ -0.79
BRCA1-201ENST00000352993 FGD6Q6ZV73 1430 aa10.08□□□□□ -0.8
BRCA1-201ENST00000352993 TDRD9Q8NDG6 1382 aaKnown RBP10.08□□□□□ -0.8
BRCA1-201ENST00000352993 RSPH6AQ9H0K4 717 aa10.08□□□□□ -0.8
BRCA1-201ENST00000352993 MAP3K1Q13233 1512 aa10.08□□□□□ -0.8
BRCA1-201ENST00000352993 CTTNBP2Q8WZ74 1663 aa10.07□□□□□ -0.8
BRCA1-201ENST00000352993 MPHOSPH9Q99550 1183 aa10.07□□□□□ -0.8
BRCA1-201ENST00000352993 ABCC10Q5T3U5 1492 aa10.07□□□□□ -0.8
BRCA1-201ENST00000352993 PLIN1O60240 522 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 NCOA2Q15596 1464 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 MS4A1P11836 297 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 NBPF8Q3BBV2 869 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 GLIPR1L2Q4G1C9 344 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 IGF1RP08069 1367 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 PKNOX2Q96KN3 472 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 HFM1A2PYH4 1435 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 RNF123Q5XPI4 1314 aa10.06□□□□□ -0.8
BRCA1-201ENST00000352993 PTPRKQ15262 1439 aa10.05□□□□□ -0.8
BRCA1-201ENST00000352993 NCOA1Q15788 1441 aa10.05□□□□□ -0.8
BRCA1-201ENST00000352993 FRAT2O75474 233 aaPredicted RBP10.05□□□□□ -0.8
BRCA1-201ENST00000352993 NAIPQ13075 1403 aa10.05□□□□□ -0.8
BRCA1-201ENST00000352993 PCF11O94913 1555 aaKnown RBP10.04□□□□□ -0.8
BRCA1-201ENST00000352993 ARID3CA6NKF2 412 aa10.03□□□□□ -0.8
BRCA1-201ENST00000352993 PNISRQ8TF01 805 aaKnown RBP10.03□□□□□ -0.8
BRCA1-201ENST00000352993 KIAA0586Q9BVV6 1533 aa10.03□□□□□ -0.8
BRCA1-201ENST00000352993 PTPN23Q9H3S7 1636 aa10.02□□□□□ -0.8
BRCA1-201ENST00000352993 UGGT2Q9NYU1 1516 aa10.02□□□□□ -0.81
BRCA1-201ENST00000352993 VSIG10Q8N0Z9 540 aa10.02□□□□□ -0.81
BRCA1-201ENST00000352993 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.02□□□□□ -0.81
BRCA1-201ENST00000352993 RGS3P49796 1198 aa10.02□□□□□ -0.81
BRCA1-201ENST00000352993 SLC4A1APQ9BWU0 796 aaKnown RBP10.02□□□□□ -0.81
BRCA1-201ENST00000352993 FAM43AQ8N2R8 423 aa10.01□□□□□ -0.81
BRCA1-201ENST00000352993 NAP1L5Q96NT1 182 aaPredicted RBP10.01□□□□□ -0.81
BRCA1-201ENST00000352993 CRBNQ96SW2 442 aa10.01□□□□□ -0.81
BRCA1-201ENST00000352993 CFAP43Q8NDM7 1665 aa9.99□□□□□ -0.81
BRCA1-201ENST00000352993 CDCA7LQ96GN5 454 aa9.99□□□□□ -0.81
BRCA1-201ENST00000352993 DCAF11Q8TEB1 546 aa9.99□□□□□ -0.81
BRCA1-201ENST00000352993 KDM5BQ9UGL1 1544 aa9.99□□□□□ -0.81
BRCA1-201ENST00000352993 ZCCHC11Q5TAX3 1644 aaKnown RBP9.97□□□□□ -0.81
BRCA1-201ENST00000352993 IQGAP2Q13576 1575 aa9.96□□□□□ -0.81
BRCA1-201ENST00000352993 CASKIN1Q8WXD9 1431 aa9.96□□□□□ -0.81
BRCA1-201ENST00000352993 FYCO1Q9BQS8 1478 aa9.96□□□□□ -0.82
BRCA1-201ENST00000352993 KIAA0556O60303 1618 aa9.96□□□□□ -0.82
BRCA1-201ENST00000352993 AEBP2Q6ZN18 517 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-201ENST00000352993 SLKQ9H2G2 1235 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-201ENST00000352993 MYOM3Q5VTT5 1437 aa9.95□□□□□ -0.82
BRCA1-201ENST00000352993 KDM2AQ9Y2K7 1162 aa9.95□□□□□ -0.82
BRCA1-201ENST00000352993 FAM161AQ3B820 660 aa9.95□□□□□ -0.82
BRCA1-201ENST00000352993 USP47Q96K76 1375 aa9.94□□□□□ -0.82
BRCA1-201ENST00000352993 POGKQ9P215 609 aa9.94□□□□□ -0.82
BRCA1-201ENST00000352993 DHX29Q7Z478 1369 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 144 ms