RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 NAIPQ13075 1403 aa10.69□□□□□ -0.7
VMA21-201ENST00000330374 SALL2Q9Y467 1007 aaPredicted RBP10.69□□□□□ -0.7
VMA21-201ENST00000330374 HFM1A2PYH4 1435 aa10.69□□□□□ -0.7
VMA21-201ENST00000330374 ZBED9Q6R2W3 1325 aa10.69□□□□□ -0.7
VMA21-201ENST00000330374 CNTLNQ9NXG0 1405 aa10.69□□□□□ -0.7
VMA21-201ENST00000330374 NCAPD3P42695 1498 aa10.68□□□□□ -0.7
VMA21-201ENST00000330374 RAD54L2Q9Y4B4 1467 aa10.68□□□□□ -0.7
VMA21-201ENST00000330374 ZBTB47Q9UFB7 747 aaPredicted RBP10.68□□□□□ -0.7
VMA21-201ENST00000330374 CFAP43Q8NDM7 1665 aa10.68□□□□□ -0.7
VMA21-201ENST00000330374 FMN1Q68DA7 1419 aa10.67□□□□□ -0.7
VMA21-201ENST00000330374 MPHOSPH9Q99550 1183 aa10.67□□□□□ -0.7
VMA21-201ENST00000330374 CASKIN1Q8WXD9 1431 aa10.67□□□□□ -0.7
VMA21-201ENST00000330374 CCDC7Q96M83 1385 aa10.67□□□□□ -0.7
VMA21-201ENST00000330374 PTPN23Q9H3S7 1636 aa10.67□□□□□ -0.7
VMA21-201ENST00000330374 NBPF8Q3BBV2 869 aa10.66□□□□□ -0.7
VMA21-201ENST00000330374 FYCO1Q9BQS8 1478 aa10.66□□□□□ -0.7
VMA21-201ENST00000330374 ANO8Q9HCE9 1232 aaPredicted RBP10.65□□□□□ -0.7
VMA21-201ENST00000330374 LAS1LQ9Y4W2 734 aaKnown RBP10.65□□□□□ -0.7
VMA21-201ENST00000330374 KIF7Q2M1P5 1343 aa10.65□□□□□ -0.71
VMA21-201ENST00000330374 ARID3AQ99856 593 aa10.64□□□□□ -0.71
VMA21-201ENST00000330374 NCOA2Q15596 1464 aa10.64□□□□□ -0.71
VMA21-201ENST00000330374 IPO9Q96P70 1041 aaKnown RBP10.64□□□□□ -0.71
VMA21-201ENST00000330374 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.63□□□□□ -0.71
VMA21-201ENST00000330374 KDM5BQ9UGL1 1544 aa10.63□□□□□ -0.71
VMA21-201ENST00000330374 CADPSQ9ULU8 1353 aa10.63□□□□□ -0.71
VMA21-201ENST00000330374 HMGXB3Q12766 1538 aa10.63□□□□□ -0.71
VMA21-201ENST00000330374 MYOM3Q5VTT5 1437 aa10.63□□□□□ -0.71
VMA21-201ENST00000330374 IL27Q8NEV9 243 aa10.62□□□□□ -0.71
VMA21-201ENST00000330374 NUDCQ9Y266 331 aa10.61□□□□□ -0.71
VMA21-201ENST00000330374 TMC1Q8TDI8 760 aa10.6□□□□□ -0.71
VMA21-201ENST00000330374 TDRD9Q8NDG6 1382 aaKnown RBP10.59□□□□□ -0.71
VMA21-201ENST00000330374 NCOA1Q15788 1441 aa10.59□□□□□ -0.71
VMA21-201ENST00000330374 SPRYD3Q8NCJ5 442 aa10.58□□□□□ -0.72
VMA21-201ENST00000330374 ECM2O94769 699 aaPredicted RBP10.58□□□□□ -0.72
VMA21-201ENST00000330374 NEFMP07197 916 aa10.57□□□□□ -0.72
VMA21-201ENST00000330374 KDM6BO15054 1643 aa10.57□□□□□ -0.72
VMA21-201ENST00000330374 SKAP1Q86WV1 359 aa10.57□□□□□ -0.72
VMA21-201ENST00000330374 EXOC6Q8TAG9 804 aa10.56□□□□□ -0.72
VMA21-201ENST00000330374 DENND4BO75064 1496 aaPredicted RBP10.56□□□□□ -0.72
VMA21-201ENST00000330374 SNAPC4Q5SXM2 1469 aa10.56□□□□□ -0.72
VMA21-201ENST00000330374 EFCAB5A4FU69 1503 aa10.55□□□□□ -0.72
VMA21-201ENST00000330374 FANCD2Q9BXW9 1451 aa10.55□□□□□ -0.72
VMA21-201ENST00000330374 ZNF644Q9H582 1327 aaPredicted RBP10.55□□□□□ -0.72
VMA21-201ENST00000330374 SMG6Q86US8 1419 aaKnown RBP10.55□□□□□ -0.72
VMA21-201ENST00000330374 MYCNP04198 464 aaPredicted RBP10.54□□□□□ -0.72
VMA21-201ENST00000330374 KDM2AQ9Y2K7 1162 aa10.54□□□□□ -0.72
VMA21-201ENST00000330374 ZNF777Q9ULD5 760 aaPredicted RBP10.53□□□□□ -0.72
VMA21-201ENST00000330374 POLA1P09884 1462 aaPredicted RBP10.53□□□□□ -0.72
VMA21-201ENST00000330374 SUPT6HQ7KZ85 1726 aaKnown RBP10.51□□□□□ -0.73
VMA21-201ENST00000330374 PLIN1O60240 522 aa10.51□□□□□ -0.73
VMA21-201ENST00000330374 PDE4AP27815 886 aa10.51□□□□□ -0.73
VMA21-201ENST00000330374 PNISRQ8TF01 805 aaKnown RBP10.51□□□□□ -0.73
VMA21-201ENST00000330374 CIZ1Q9ULV3 898 aaPredicted RBP10.51□□□□□ -0.73
VMA21-201ENST00000330374 SLC4A3P48751 1232 aa10.5□□□□□ -0.73
VMA21-201ENST00000330374 FBLN2P98095 1184 aa10.5□□□□□ -0.73
VMA21-201ENST00000330374 MAGI3Q5TCQ9 1506 aa10.5□□□□□ -0.73
VMA21-201ENST00000330374 ANKRD30BQ9BXX2 1392 aa10.5□□□□□ -0.73
VMA21-201ENST00000330374 USP47Q96K76 1375 aa10.5□□□□□ -0.73
VMA21-201ENST00000330374 NESP48681 1621 aa10.5□□□□□ -0.73
VMA21-201ENST00000330374 RRP1P56182 461 aaKnown RBP10.49□□□□□ -0.73
VMA21-201ENST00000330374 LRRIQ1Q96JM4 1722 aa10.49□□□□□ -0.73
VMA21-201ENST00000330374 GRIN2BQ13224 1484 aa10.49□□□□□ -0.73
VMA21-201ENST00000330374 CHGAP10645 457 aaKnown RBP10.49□□□□□ -0.73
VMA21-201ENST00000330374 RCAN3Q9UKA8 241 aa10.49□□□□□ -0.73
VMA21-201ENST00000330374 DHX29Q7Z478 1369 aaKnown RBP10.48□□□□□ -0.73
VMA21-201ENST00000330374 EHBP1L1Q8N3D4 1523 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 CARD11Q9BXL7 1154 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 ABCA10Q8WWZ4 1543 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 PLCD3Q8N3E9 789 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 TOPBP1Q92547 1522 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 CTTNBP2Q8WZ74 1663 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 CDCA7LQ96GN5 454 aa10.48□□□□□ -0.73
VMA21-201ENST00000330374 CDK13Q14004 1512 aaKnown RBP10.47□□□□□ -0.73
VMA21-201ENST00000330374 UGGT2Q9NYU1 1516 aa10.47□□□□□ -0.73
VMA21-201ENST00000330374 PKD2Q13563 968 aa10.47□□□□□ -0.73
VMA21-201ENST00000330374 RNF123Q5XPI4 1314 aa10.47□□□□□ -0.73
VMA21-201ENST00000330374 RPRD2Q5VT52 1461 aaKnown RBP10.47□□□□□ -0.73
VMA21-201ENST00000330374 SPATA31E1Q6ZUB1 1445 aa10.46□□□□□ -0.73
VMA21-201ENST00000330374 HECW1Q76N89 1606 aa10.46□□□□□ -0.74
VMA21-201ENST00000330374 ST20-MTHFSA0A0A6YYL1 179 aa10.45□□□□□ -0.74
VMA21-201ENST00000330374 TCERG1O14776 1098 aaKnown RBP10.45□□□□□ -0.74
VMA21-201ENST00000330374 BRPF3Q9ULD4 1205 aa10.45□□□□□ -0.74
VMA21-201ENST00000330374 PRDM2Q13029 1718 aa10.45□□□□□ -0.74
VMA21-201ENST00000330374 TEX14Q8IWB6 1497 aa10.45□□□□□ -0.74
VMA21-201ENST00000330374 BACH2Q9BYV9 841 aa10.44□□□□□ -0.74
VMA21-201ENST00000330374 EIF5BO60841 1220 aaKnown RBP10.43□□□□□ -0.74
VMA21-201ENST00000330374 DNMBPQ6XZF7 1577 aa10.43□□□□□ -0.74
VMA21-201ENST00000330374 CC2D1BQ5T0F9 858 aaKnown RBP10.43□□□□□ -0.74
VMA21-201ENST00000330374 CUL7Q14999 1698 aa10.42□□□□□ -0.74
VMA21-201ENST00000330374 GCC2Q8IWJ2 1684 aa10.42□□□□□ -0.74
VMA21-201ENST00000330374 GAPVD1Q14C86 1478 aa10.42□□□□□ -0.74
VMA21-201ENST00000330374 DCAF11Q8TEB1 546 aa10.42□□□□□ -0.74
VMA21-201ENST00000330374 CRBNQ96SW2 442 aa10.42□□□□□ -0.74
VMA21-201ENST00000330374 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.41□□□□□ -0.74
VMA21-201ENST00000330374 CC2D2AQ9P2K1 1620 aa10.41□□□□□ -0.74
VMA21-201ENST00000330374 DAPK1P53355 1430 aa10.41□□□□□ -0.74
VMA21-201ENST00000330374 VASPP50552 380 aaPredicted RBP10.41□□□□□ -0.74
VMA21-201ENST00000330374 EPRSP07814 1512 aaKnown RBP10.41□□□□□ -0.74
VMA21-201ENST00000330374 TCOF1Q13428 1488 aaKnown RBP10.41□□□□□ -0.74
VMA21-201ENST00000330374 PPM1GO15355 546 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms