RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 NISCHQ9Y2I1 1504 aa15.01□□□□□ -0.01
VMA21-201ENST00000330374 CHIC1Q5VXU3 224 aa14.9□□□□□ -0.02
VMA21-201ENST00000330374 AEBP2Q6ZN18 517 aaPredicted RBP14.01□□□□□ -0.17
VMA21-201ENST00000330374 EHMT2Q96KQ7 1210 aa13.83□□□□□ -0.2
VMA21-201ENST00000330374 SHROOM4Q9ULL8 1493 aa13.57□□□□□ -0.24
VMA21-201ENST00000330374 SUPT5HO00267 1087 aaKnown RBP13.47□□□□□ -0.25
VMA21-201ENST00000330374 HRCP23327 699 aa13.18□□□□□ -0.3
VMA21-201ENST00000330374 PCGF6Q9BYE7 350 aa13.15□□□□□ -0.3
VMA21-201ENST00000330374 PPARGC1BQ86YN6 1023 aaKnown RBP13.1□□□□□ -0.31
VMA21-201ENST00000330374 MYO15BQ96JP2 1530 aa13.03□□□□□ -0.32
VMA21-201ENST00000330374 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
VMA21-201ENST00000330374 DCAF8L2P0C7V8 631 aa13.01□□□□□ -0.33
VMA21-201ENST00000330374 PLPPR3Q6T4P5 718 aa12.96□□□□□ -0.33
VMA21-201ENST00000330374 PHF23Q9BUL5 403 aaPredicted RBP12.95□□□□□ -0.34
VMA21-201ENST00000330374 LOC105371045A0A1W2PR82 267 aa12.84□□□□□ -0.35
VMA21-201ENST00000330374 ZCCHC6Q5VYS8 1495 aaKnown RBP12.71□□□□□ -0.37
VMA21-201ENST00000330374 TRIM26Q12899 539 aaPredicted RBP12.61□□□□□ -0.39
VMA21-201ENST00000330374 DCAF1Q9Y4B6 1507 aa12.57□□□□□ -0.4
VMA21-201ENST00000330374 FAM9AQ8IZU1 332 aaPredicted RBP12.53□□□□□ -0.4
VMA21-201ENST00000330374 KCNA4P22459 653 aa12.48□□□□□ -0.41
VMA21-201ENST00000330374 SCAF1Q9H7N4 1312 aaKnown RBP12.44□□□□□ -0.42
VMA21-201ENST00000330374 SLC4A1APQ9BWU0 796 aaKnown RBP12.43□□□□□ -0.42
VMA21-201ENST00000330374 ZEB1P37275 1124 aaPredicted RBP12.39□□□□□ -0.43
VMA21-201ENST00000330374 PELP1Q8IZL8 1130 aaKnown RBP12.38□□□□□ -0.43
VMA21-201ENST00000330374 CCDC180Q9P1Z9 1646 aa12.38□□□□□ -0.43
VMA21-201ENST00000330374 TRIM41Q8WV44 630 aa12.37□□□□□ -0.43
VMA21-201ENST00000330374 SENP3Q9H4L4 574 aaPredicted RBP12.27□□□□□ -0.45
VMA21-201ENST00000330374 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.25□□□□□ -0.45
VMA21-201ENST00000330374 TTBK1Q5TCY1 1321 aaPredicted RBP12.25□□□□□ -0.45
VMA21-201ENST00000330374 AMER1Q5JTC6 1135 aaPredicted RBP12.22□□□□□ -0.45
VMA21-201ENST00000330374 CCER1Q8TC90 406 aaPredicted RBP12.2□□□□□ -0.46
VMA21-201ENST00000330374 NEUROD1Q13562 356 aa12.19□□□□□ -0.46
VMA21-201ENST00000330374 RTN4Q9NQC3 1192 aaKnown RBP12.17□□□□□ -0.46
VMA21-201ENST00000330374 ACIN1Q9UKV3 1341 aaKnown RBP12.15□□□□□ -0.46
VMA21-201ENST00000330374 GTF3C3Q9Y5Q9 886 aa12.13□□□□□ -0.47
VMA21-201ENST00000330374 RSF1Q96T23 1441 aaPredicted RBP12.1□□□□□ -0.47
VMA21-201ENST00000330374 DIEXFQ68CQ4 756 aaKnown RBP12.08□□□□□ -0.48
VMA21-201ENST00000330374 CSRNP3Q8WYN3 585 aa12.08□□□□□ -0.48
VMA21-201ENST00000330374 RB1CC1Q8TDY2 1594 aa12.05□□□□□ -0.48
VMA21-201ENST00000330374 YTHDC1Q96MU7 727 aaKnown RBP12.05□□□□□ -0.48
VMA21-201ENST00000330374 SCRIBQ14160 1630 aa12.05□□□□□ -0.48
VMA21-201ENST00000330374 CENPBP07199 599 aaPredicted RBP12.05□□□□□ -0.48
VMA21-201ENST00000330374 ABCC9O60706 1549 aa12.05□□□□□ -0.48
VMA21-201ENST00000330374 ADRA2BP18089 450 aa11.96□□□□□ -0.5
VMA21-201ENST00000330374 NCBP3Q53F19 620 aaKnown RBP11.94□□□□□ -0.5
VMA21-201ENST00000330374 CECR2Q9BXF3 1484 aa11.87□□□□□ -0.51
VMA21-201ENST00000330374 ZNF316A6NFI3 1004 aaPredicted RBP11.83□□□□□ -0.52
VMA21-201ENST00000330374 UBTFP17480 764 aaKnown RBP11.82□□□□□ -0.52
VMA21-201ENST00000330374 HNRNPUL2Q1KMD3 747 aaKnown RBP11.82□□□□□ -0.52
VMA21-201ENST00000330374 MIER1Q8N108 512 aa11.8□□□□□ -0.52
VMA21-201ENST00000330374 MYT1Q01538 1121 aa11.8□□□□□ -0.52
VMA21-201ENST00000330374 MROH2BQ7Z745 1585 aa11.79□□□□□ -0.52
VMA21-201ENST00000330374 RANGAP1P46060 587 aaPredicted RBP11.75□□□□□ -0.53
VMA21-201ENST00000330374 WIZO95785 1651 aa11.75□□□□□ -0.53
VMA21-201ENST00000330374 HAP1P54257 671 aaPredicted RBP11.74□□□□□ -0.53
VMA21-201ENST00000330374 CEP162Q5TB80 1403 aa11.73□□□□□ -0.53
VMA21-201ENST00000330374 ABCC8Q09428 1581 aa11.71□□□□□ -0.54
VMA21-201ENST00000330374 CCDC88BA6NC98 1476 aa11.7□□□□□ -0.54
VMA21-201ENST00000330374 SOGA1O94964 1423 aa11.68□□□□□ -0.54
VMA21-201ENST00000330374 RUSC2Q8N2Y8 1516 aa11.62□□□□□ -0.55
VMA21-201ENST00000330374 WRNQ14191 1432 aaPredicted RBP eCLIP11.62□□□□□ -0.55
VMA21-201ENST00000330374 FKBP8Q14318 412 aa11.61□□□□□ -0.55
VMA21-201ENST00000330374 TNIKQ9UKE5 1360 aa11.6□□□□□ -0.55
VMA21-201ENST00000330374 APLP2Q06481 763 aa11.59□□□□□ -0.55
VMA21-201ENST00000330374 PPP4R3CPQ6ZMV5 832 aa11.57□□□□□ -0.56
VMA21-201ENST00000330374 BAZ1AQ9NRL2 1556 aaPredicted RBP11.54□□□□□ -0.56
VMA21-201ENST00000330374 SUPT16HQ9Y5B9 1047 aaKnown RBP11.52□□□□□ -0.57
VMA21-201ENST00000330374 EIF4G1Q04637 1599 aaKnown RBP11.51□□□□□ -0.57
VMA21-201ENST00000330374 BCANQ96GW7 911 aa11.5□□□□□ -0.57
VMA21-201ENST00000330374 GOLGA3Q08378 1498 aa11.48□□□□□ -0.57
VMA21-201ENST00000330374 NACADO15069 1562 aa11.47□□□□□ -0.57
VMA21-201ENST00000330374 PRKCSHP14314 528 aaPredicted RBP11.47□□□□□ -0.57
VMA21-201ENST00000330374 ITGAEP38570 1179 aa11.46□□□□□ -0.57
VMA21-201ENST00000330374 CLIP1P30622 1438 aa11.46□□□□□ -0.58
VMA21-201ENST00000330374 TOP2AP11388 1531 aaKnown RBP11.43□□□□□ -0.58
VMA21-201ENST00000330374 SMARCA2P51531 1590 aa11.42□□□□□ -0.58
VMA21-201ENST00000330374 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
VMA21-201ENST00000330374 TSHZ2Q9NRE2 1034 aa11.42□□□□□ -0.58
VMA21-201ENST00000330374 PABPN1Q86U42 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
VMA21-201ENST00000330374 EEA1Q15075 1411 aa11.42□□□□□ -0.58
VMA21-201ENST00000330374 TPRNQ4KMQ1 711 aa11.38□□□□□ -0.59
VMA21-201ENST00000330374 VPS8Q8N3P4 1428 aa11.37□□□□□ -0.59
VMA21-201ENST00000330374 CEP164Q9UPV0 1460 aa11.36□□□□□ -0.59
VMA21-201ENST00000330374 SMARCA4P51532 1647 aa11.35□□□□□ -0.59
VMA21-201ENST00000330374 ANP32EQ9BTT0 268 aa11.35□□□□□ -0.59
VMA21-201ENST00000330374 DHX57Q6P158 1386 aaKnown RBP11.35□□□□□ -0.59
VMA21-201ENST00000330374 KANK4Q5T7N3 995 aaPredicted RBP11.34□□□□□ -0.59
VMA21-201ENST00000330374 PPP6R1Q9UPN7 881 aa11.34□□□□□ -0.59
VMA21-201ENST00000330374 RAPGEF2Q9Y4G8 1499 aa11.33□□□□□ -0.6
VMA21-201ENST00000330374 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
VMA21-201ENST00000330374 DDX10Q13206 875 aaKnown RBP11.3□□□□□ -0.6
VMA21-201ENST00000330374 CLSPNQ9HAW4 1339 aa11.3□□□□□ -0.6
VMA21-201ENST00000330374 SYNJ1O43426 1573 aa11.28□□□□□ -0.6
VMA21-201ENST00000330374 PIAS4Q8N2W9 510 aaPredicted RBP11.28□□□□□ -0.6
VMA21-201ENST00000330374 BCL11AQ9H165 835 aa11.27□□□□□ -0.61
VMA21-201ENST00000330374 TRIM52Q96A61 297 aa11.26□□□□□ -0.61
VMA21-201ENST00000330374 KIF21BO75037 1637 aa11.26□□□□□ -0.61
VMA21-201ENST00000330374 FOXD4L1Q9NU39 408 aa11.24□□□□□ -0.61
VMA21-201ENST00000330374 NEFLP07196 543 aa11.23□□□□□ -0.61
VMA21-201ENST00000330374 SIN3AQ96ST3 1273 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms