RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	SCM3	Q12334	223 aa		4.39	□□□□□ -1.71
CTK1	YKL139W	ERG27	Q12452	347 aa	Known RBP	4.39	□□□□□ -1.71
CTK1	YKL139W	YER175W-A	Q8TGU4	54 aa		4.39	□□□□□ -1.71
CTK1	YKL139W	SPO16	P17122	198 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	STE4	P18851	423 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	CNE1	P27825	502 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	ALY1	P36117	915 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	KTR3	P38130	404 aa	Predicted RBP	4.38	□□□□□ -1.71
CTK1	YKL139W	TPA1	P40032	644 aa	Known RBP	4.38	□□□□□ -1.71
CTK1	YKL139W	PFK26	P40433	827 aa	Known RBP	4.38	□□□□□ -1.71
CTK1	YKL139W	IMO32	P53219	342 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	SSL2	Q00578	843 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	PSK2	Q08217	1101 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	YOL073C	Q08232	322 aa		4.38	□□□□□ -1.71
CTK1	YKL139W	SEC53	P07283	254 aa	Known RBP	4.37	□□□□□ -1.71
CTK1	YKL139W	YML003W	P0CF16	290 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	YPK1	P12688	680 aa	Known RBP	4.37	□□□□□ -1.71
CTK1	YKL139W	FUR1	P18562	216 aa	Known RBP	4.37	□□□□□ -1.71
CTK1	YKL139W	PDE1	P22434	369 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	YCK1	P23291	538 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	CTS1	P29029	562 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	YJL206C	P39529	758 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	RMD8	P43620	662 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	SYF1	Q04048	859 aa	Predicted RBP	4.37	□□□□□ -1.71
CTK1	YKL139W	CIR2	Q08822	631 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	RRG1	Q12167	365 aa	Predicted RBP	4.37	□□□□□ -1.71
CTK1	YKL139W	PRS5	Q12265	496 aa	Known RBP	4.37	□□□□□ -1.71
CTK1	YKL139W	YBR255C-A	Q3E776	120 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	LAM4	P38800	1345 aa		4.37	□□□□□ -1.71
CTK1	YKL139W	GCN4	P03069	281 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	PRE8	P23639	250 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	LRE1	P25579	583 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	YBL029W	P38201	376 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	RKM3	P38222	552 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	CBR1	P38626	284 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	PCL5	P38794	229 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	AAD10	P47182	288 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	DSD1	P53095	428 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	YGR079W	P53249	370 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	PIL1	P53252	339 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	YNR061C	P53747	219 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	NGL3	Q03210	505 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	FCP1	Q03254	732 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	GTB1	Q04924	702 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	ARP9	Q05123	467 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	UTP21	Q06078	939 aa	Predicted RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	YOR019W	Q99248	730 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	ARG3	P05150	338 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	RFA2	P26754	273 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	LOT5	P34234	306 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	YPT10	P38146	199 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	ARG2	P40360	574 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	UBP7	P40453	1071 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	NDC80	P40460	691 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	PMT6	P42934	759 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	AVT1	P47082	602 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	MRX6	P48564	524 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	VPS75	P53853	264 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	SMX3	P54999	86 aa	Predicted RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	RPT6	Q01939	405 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	YML119W	Q03208	357 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	ATG23	Q06671	453 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	RIX7	Q07844	837 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	BMS1	Q08965	1183 aa	Known RBP	4.36	□□□□□ -1.71
CTK1	YKL139W	TGS1	Q12052	315 aa		4.36	□□□□□ -1.71
CTK1	YKL139W	CKA1	P15790	372 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	AMD2	P22580	549 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	ELM1	P32801	640 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	JHD1	P40034	492 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	SLZ1	P40167	298 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	ARF3	P40994	183 aa	RIP-Chip data	4.35	□□□□□ -1.71	not detected
CTK1	YKL139W	CIR1	P42940	261 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	CTR1	P49573	406 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	SPC98	P53540	846 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	INN1	P53901	409 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	YPL071C	Q02864	156 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	MUB1	Q03162	620 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	NGL2	Q03264	515 aa	Known RBP	4.35	□□□□□ -1.71
CTK1	YKL139W	CTI6	Q08923	506 aa		4.35	□□□□□ -1.71
CTK1	YKL139W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
CTK1	YKL139W	SNU66	Q12420	587 aa	Predicted RBP	4.35	□□□□□ -1.71
CTK1	YKL139W	CET1	O13297	549 aa	Predicted RBP	4.34	□□□□□ -1.71
CTK1	YKL139W	MET17	P06106	444 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	RED1	P14291	827 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	PEP3	P27801	918 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	SRB5	P32585	307 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	TFC3	P34111	1160 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	GMH1	P36125	273 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	RTS1	P38903	757 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	FLC2	P39719	783 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	YNL092W	P53934	400 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	UBP16	Q02863	499 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	YMR206W	Q03695	313 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	YDR179W-A	Q03983	463 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	SPN1	Q06505	410 aa	Predicted RBP	4.34	□□□□□ -1.71
CTK1	YKL139W	YDL242W	Q07746	117 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	NMD4	Q12129	218 aa		4.34	□□□□□ -1.71
CTK1	YKL139W	NOP58	Q12499	511 aa	Known RBP	4.34	□□□□□ -1.71
CTK1	YKL139W	AAC1	P04710	309 aa		4.33	□□□□□ -1.72
CTK1	YKL139W	HOM3	P10869	527 aa		4.33	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms