RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Wfdc13Q5DQQ6 81 aa13.97□□□□□ -0.17
Upf3a-201ENSMUST00000043767 Lrp1bQ9JI18 4599 aa13.95□□□□□ -0.18
Upf3a-201ENSMUST00000043767 Gm27235Q3UW50 83 aa13.95□□□□□ -0.18
Upf3a-201ENSMUST00000043767 Spint4Q9D263 159 aa13.92□□□□□ -0.18
Upf3a-201ENSMUST00000043767 Q8K1L6 76 aa13.92□□□□□ -0.18
Upf3a-201ENSMUST00000043767 SacsQ9JLC8 4582 aa13.91□□□□□ -0.18
Upf3a-201ENSMUST00000043767 Hectd4E9Q2E4 4418 aa13.91□□□□□ -0.18
Upf3a-201ENSMUST00000043767 Cdc42se1Q8BHL7 80 aa13.91□□□□□ -0.18
Upf3a-201ENSMUST00000043767 1700018G05RikA0A1B0GSI2 66 aa13.87□□□□□ -0.19
Upf3a-201ENSMUST00000043767 Igkv3-7A0A0G2JE31 119 aa13.86□□□□□ -0.19
Upf3a-201ENSMUST00000043767 Igkv3-10A0A0G2JGN0 119 aa13.85□□□□□ -0.19
Upf3a-201ENSMUST00000043767 Gm21886J3QJU9 214 aa13.84□□□□□ -0.19
Upf3a-201ENSMUST00000043767 Chchd10Q7TNL9 138 aa13.83□□□□□ -0.2
Upf3a-201ENSMUST00000043767 Atox1O08997 68 aaKnown RBP13.81□□□□□ -0.2
Upf3a-201ENSMUST00000043767 Ryr1E9PZQ0 5035 aa13.8□□□□□ -0.2
Upf3a-201ENSMUST00000043767 Igkv3-5A0A140T8M6 119 aa13.8□□□□□ -0.2
Upf3a-201ENSMUST00000043767 Odf3bQ5M8M2 238 aa13.79□□□□□ -0.2
Upf3a-201ENSMUST00000043767 Defb39Q70KL3 74 aa13.76□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Coa5Q99M07 74 aa13.75□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Anapc11Q9CPX9 84 aa13.75□□□□□ -0.21
Upf3a-201ENSMUST00000043767 A0A286YE49 62 aa13.75□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Gm10197F6QEY5 67 aa13.73□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Gm20604F8WIA3 75 aa13.73□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Fat2Q5F226 4351 aa13.72□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Gm28230A0A0A0MQ91 144 aa13.71□□□□□ -0.21
Upf3a-201ENSMUST00000043767 Ccdc179J3QM76 67 aa13.7□□□□□ -0.22
Upf3a-201ENSMUST00000043767 Kmt2cQ8BRH4 4903 aa13.7□□□□□ -0.22
Upf3a-201ENSMUST00000043767 Reg3aO09037 175 aa13.7□□□□□ -0.22
Upf3a-201ENSMUST00000043767 Defb12Q8K4N3 78 aa13.65□□□□□ -0.22
Upf3a-201ENSMUST00000043767 Vps13bQ80TY5 3993 aa13.64□□□□□ -0.23
Upf3a-201ENSMUST00000043767 Bean1Q9EQG5 255 aa13.63□□□□□ -0.23
Upf3a-201ENSMUST00000043767 Znf706Q9D115 76 aaKnown RBP13.63□□□□□ -0.23
Upf3a-201ENSMUST00000043767 Rpl37aP61514 92 aa13.62□□□□□ -0.23
Upf3a-201ENSMUST00000043767 RetnlbQ99P86 105 aa13.62□□□□□ -0.23
Upf3a-201ENSMUST00000043767 1700074P13RikQ9D9G7 251 aa13.6□□□□□ -0.23
Upf3a-201ENSMUST00000043767 Gm2310J3QNJ2 377 aa13.59□□□□□ -0.23
Upf3a-201ENSMUST00000043767 Cypt14J3QPF7 87 aa13.55□□□□□ -0.24
Upf3a-201ENSMUST00000043767 Pkhd1l1Q80ZA4 4249 aa13.55□□□□□ -0.24
Upf3a-201ENSMUST00000043767 Sox16Q62247 57 aa13.52□□□□□ -0.25
Upf3a-201ENSMUST00000043767 Dnah8Q91XQ0 4731 aa13.49□□□□□ -0.25
Upf3a-201ENSMUST00000043767 Phxr4P15974 95 aa13.48□□□□□ -0.25
Upf3a-201ENSMUST00000043767 Lrp1Q91ZX7 4545 aaKnown RBP13.45□□□□□ -0.26
Upf3a-201ENSMUST00000043767 Chtf8P0CG14 533 aa13.43□□□□□ -0.26
Upf3a-201ENSMUST00000043767 4933415A04RikQ9D443 101 aa13.41□□□□□ -0.26
Upf3a-201ENSMUST00000043767 Krtap19-5O08632 62 aa13.38□□□□□ -0.27
Upf3a-201ENSMUST00000043767 Fat3Q8BNA6 4555 aa13.36□□□□□ -0.27
Upf3a-201ENSMUST00000043767 Abca13Q5SSE9 5034 aa13.33□□□□□ -0.28
Upf3a-201ENSMUST00000043767 Spaca4Q80ZQ0 127 aa13.31□□□□□ -0.28
Upf3a-201ENSMUST00000043767 Gm10267M0QWD8 85 aa13.3□□□□□ -0.28
Upf3a-201ENSMUST00000043767 Gm10160F6Y577 67 aa13.29□□□□□ -0.28
Upf3a-201ENSMUST00000043767 Gm16253D3Z167 63 aa13.28□□□□□ -0.28
Upf3a-201ENSMUST00000043767 Igkv3-3A0A140T8Q0 119 aa13.25□□□□□ -0.29
Upf3a-201ENSMUST00000043767 Herc2Q4U2R1 4836 aa13.23□□□□□ -0.29
Upf3a-201ENSMUST00000043767 Birc6O88738 4882 aa13.12□□□□□ -0.31
Upf3a-201ENSMUST00000043767 Kiaa1109A2AAE1 5005 aa13.12□□□□□ -0.31
Upf3a-201ENSMUST00000043767 Gm10643Q3URG9 111 aa13.09□□□□□ -0.31
Upf3a-201ENSMUST00000043767 Gm20661K7N787 53 aa13.08□□□□□ -0.32
Upf3a-201ENSMUST00000043767 Mycbp2Q7TPH6 4711 aa13.03□□□□□ -0.32
Upf3a-201ENSMUST00000043767 Ndufb1P0DN34 57 aa13.03□□□□□ -0.32
Upf3a-201ENSMUST00000043767 Dnhd1D3Z2X2 4750 aa12.99□□□□□ -0.33
Upf3a-201ENSMUST00000043767 Defb38Q7TNV7 63 aa12.98□□□□□ -0.33
Upf3a-201ENSMUST00000043767 Gm9736A0A1W2P7N1 277 aa12.97□□□□□ -0.33
Upf3a-201ENSMUST00000043767 HydinQ80W93 5154 aa12.95□□□□□ -0.34
Upf3a-201ENSMUST00000043767 SptssbQ925E8 76 aa12.95□□□□□ -0.34
Upf3a-201ENSMUST00000043767 Cypt15B1AXS0 87 aa12.93□□□□□ -0.34
Upf3a-201ENSMUST00000043767 D6Ertd527eA0A0N4SWI3 464 aa12.92□□□□□ -0.34
Upf3a-201ENSMUST00000043767 Limd2Q8BGB5 128 aa12.88□□□□□ -0.35
Upf3a-201ENSMUST00000043767 Gm21798J3QNU5 87 aa12.86□□□□□ -0.35
Upf3a-201ENSMUST00000043767 Rps29P62274 56 aa12.86□□□□□ -0.35
Upf3a-201ENSMUST00000043767 Uqcr11Q9CPX8 56 aa12.83□□□□□ -0.36
Upf3a-201ENSMUST00000043767 Gm3646F6S692 53 aa12.82□□□□□ -0.36
Upf3a-201ENSMUST00000043767 Defb13Q8R2I4 64 aa12.81□□□□□ -0.36
Upf3a-201ENSMUST00000043767 Sec61gP60060 68 aa12.79□□□□□ -0.36
Upf3a-201ENSMUST00000043767 Gm26620Q9CY65 116 aa12.76□□□□□ -0.37
Upf3a-201ENSMUST00000043767 PcloQ9QYX7 5068 aa12.74□□□□□ -0.37
Upf3a-201ENSMUST00000043767 1700042G07RikB1AUF7 90 aa12.73□□□□□ -0.37
Upf3a-201ENSMUST00000043767 Gm11939A2A592 99 aa12.68□□□□□ -0.38
Upf3a-201ENSMUST00000043767 Lrp2A2ARV4 4660 aa12.6□□□□□ -0.39
Upf3a-201ENSMUST00000043767 Gm5965D3Z724 196 aa12.6□□□□□ -0.39
Upf3a-201ENSMUST00000043767 9230102O04RikA2ASX7 82 aa12.58□□□□□ -0.39
Upf3a-201ENSMUST00000043767 Gm10999F6Q4M4 69 aa12.52□□□□□ -0.4
Upf3a-201ENSMUST00000043767 2310034C09RikQ9D746 214 aa12.46□□□□□ -0.41
Upf3a-201ENSMUST00000043767 Gm5767A0A0J9YTU8 78 aa12.45□□□□□ -0.42
Upf3a-201ENSMUST00000043767 2310079G19RikQ9D6L6 185 aa12.44□□□□□ -0.42
Upf3a-201ENSMUST00000043767 Q8BGJ3 129 aa12.42□□□□□ -0.42
Upf3a-201ENSMUST00000043767 Lce1mQ9CR91 182 aa12.4□□□□□ -0.42
Upf3a-201ENSMUST00000043767 Krtap3-2Q9D638 99 aa12.38□□□□□ -0.43
Upf3a-201ENSMUST00000043767 Krtap3-3Q9D7P0 99 aa12.38□□□□□ -0.43
Upf3a-201ENSMUST00000043767 Ndufs5Q99LY9 106 aa12.36□□□□□ -0.43
Upf3a-201ENSMUST00000043767 A930033H14RikG5E8X6 103 aa12.34□□□□□ -0.43
Upf3a-201ENSMUST00000043767 Herc1E9PZP8 4859 aa12.33□□□□□ -0.44
Upf3a-201ENSMUST00000043767 4930507D05RikQ8C9C9 103 aa12.27□□□□□ -0.45
Upf3a-201ENSMUST00000043767 Krtap15-1Q9QZU5 150 aa12.27□□□□□ -0.45
Upf3a-201ENSMUST00000043767 Defb1P56386 69 aa12.21□□□□□ -0.45
Upf3a-201ENSMUST00000043767 Gm9821Q8K076 103 aa12.12□□□□□ -0.47
Upf3a-201ENSMUST00000043767 Gm4491E0CX42 125 aa12.12□□□□□ -0.47
Upf3a-201ENSMUST00000043767 Rpl37Q9D823 97 aa12.12□□□□□ -0.47
Upf3a-201ENSMUST00000043767 Pla2g10Q9QXX3 151 aa12.1□□□□□ -0.47
Upf3a-201ENSMUST00000043767 Rnase13Q5GAM7 153 aa11.93□□□□□ -0.5
Upf3a-201ENSMUST00000043767 Gm18596A0A1W2P860 280 aa11.93□□□□□ -0.5
Retrieved 100 of 22,080 RNA–protein pairs in 64 ms