RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 NischQ80TM9 1593 aa48.17■■■■■ 5.3
Upf3a-201ENSMUST00000043767 Gm35339A0A140LHH9 1649 aa48.09■■■■■ 5.29
Upf3a-201ENSMUST00000043767 Abcc9P70170 1546 aa46.7■■■■■ 5.07
Upf3a-201ENSMUST00000043767 Abcc8B2RUS7 1588 aa46.19■■■■■ 4.98
Upf3a-201ENSMUST00000043767 ScribQ80U72 1612 aa43.85■■■■■ 4.61
Upf3a-201ENSMUST00000043767 Rhox8Q6VSS7 320 aa43.04■■■■■ 4.48
Upf3a-201ENSMUST00000043767 Dcaf1Q80TR8 1506 aa42.74■■■■■ 4.43
Upf3a-201ENSMUST00000043767 Kdm5dQ62240 1548 aa42.69■■■■■ 4.42
Upf3a-201ENSMUST00000043767 NacadQ5SWP3 1504 aa42.53■■■■■ 4.4
Upf3a-201ENSMUST00000043767 Rb1cc1Q9ESK9 1588 aa42.09■■■■■ 4.33
Upf3a-201ENSMUST00000043767 Sycp2Q9CUU3 1500 aa41.67■■■■■ 4.26
Upf3a-201ENSMUST00000043767 Baz1aO88379 1555 aa41.54■■■■■ 4.24
Upf3a-201ENSMUST00000043767 Ccdc180J3QNE4 1664 aa41.48■■■■■ 4.23
Upf3a-201ENSMUST00000043767 Crybg2B7ZCC2 1516 aa41.06■■■■■ 4.16
Upf3a-201ENSMUST00000043767 BicraF8VPZ9 1578 aa40.96■■■■■ 4.15
Upf3a-201ENSMUST00000043767 Rtl1Q7M732 1744 aa40.9■■■■■ 4.14
Upf3a-201ENSMUST00000043767 Zcchc6Q5BLK4 1491 aaKnown RBP40.84■■■■■ 4.13
Upf3a-201ENSMUST00000043767 Smarca2Q6DIC0 1577 aa40.47■■■■■ 4.07
Upf3a-201ENSMUST00000043767 Ccdc136Q3TVA9 1136 aa40.13■■■■■ 4.01
Upf3a-201ENSMUST00000043767 Cecr2E9Q2Z1 1453 aa39.97■■■■□ 3.99
Upf3a-201ENSMUST00000043767 Smarca4Q3TKT4 1613 aaKnown RBP39.52■■■■□ 3.92
Upf3a-201ENSMUST00000043767 Pds5bQ4VA53 1446 aaKnown RBP39.42■■■■□ 3.9
Upf3a-201ENSMUST00000043767 Brd4Q9ESU6 1400 aaKnown RBP39.39■■■■□ 3.9
Upf3a-201ENSMUST00000043767 Trim41Q5NCC3 630 aa39.35■■■■□ 3.89
Upf3a-201ENSMUST00000043767 Atad2bE9Q166 1460 aaKnown RBP39.34■■■■□ 3.89
Upf3a-201ENSMUST00000043767 Synj1Q8CHC4 1574 aa39.29■■■■□ 3.88
Upf3a-201ENSMUST00000043767 CftrP26361 1476 aa39.2■■■■□ 3.87
Upf3a-201ENSMUST00000043767 Iqgap2Q3UQ44 1575 aa39.17■■■■□ 3.86
Upf3a-201ENSMUST00000043767 Cttnbp2B9EJA2 1648 aa39.04■■■■□ 3.84
Upf3a-201ENSMUST00000043767 Esf1Q3V1V3 845 aaKnown RBP38.68■■■■□ 3.78
Upf3a-201ENSMUST00000043767 Thoc2B1AZI6 1594 aaKnown RBP38.65■■■■□ 3.78
Upf3a-201ENSMUST00000043767 Ercc6F8VPZ5 1481 aa38.65■■■■□ 3.78
Upf3a-201ENSMUST00000043767 Wdr62Q3U3T8 1523 aa38.62■■■■□ 3.77
Upf3a-201ENSMUST00000043767 Frmpd1A2AKB4 1549 aa38.62■■■■□ 3.77
Upf3a-201ENSMUST00000043767 Golga3P55937 1487 aa38.5■■■■□ 3.75
Upf3a-201ENSMUST00000043767 Cngb1E1AZ71 1325 aa38.49■■■■□ 3.75
Upf3a-201ENSMUST00000043767 Top2bQ64511 1612 aa38.28■■■■□ 3.72
Upf3a-201ENSMUST00000043767 HrcG5E8J6 738 aa38.26■■■■□ 3.71
Upf3a-201ENSMUST00000043767 Dnajc5bQ9CQ94 199 aa38.19■■■■□ 3.7
Upf3a-201ENSMUST00000043767 Cc2d2aQ8CFW7 1633 aa38.17■■■■□ 3.7
Upf3a-201ENSMUST00000043767 Unc13aQ4KUS2 1712 aa38.12■■■■□ 3.69
Upf3a-201ENSMUST00000043767 Phldb1Q6PDH0 1371 aaKnown RBP38.04■■■■□ 3.68
Upf3a-201ENSMUST00000043767 Fam135aQ6NS59 1506 aa38.01■■■■□ 3.67
Upf3a-201ENSMUST00000043767 Rsf1E9PWW9 1441 aaKnown RBP38■■■■□ 3.67
Upf3a-201ENSMUST00000043767 Ccdc88bQ4QRL3 1481 aa37.94■■■■□ 3.66
Upf3a-201ENSMUST00000043767 Chic1Q8CBW7 227 aa37.9■■■■□ 3.66
Upf3a-201ENSMUST00000043767 Fmn1Q05860 1466 aa37.77■■■■□ 3.64
Upf3a-201ENSMUST00000043767 Ubl4bQ9CQ84 188 aa37.75■■■■□ 3.63
Upf3a-201ENSMUST00000043767 Lamc3Q9R0B6 1581 aa37.7■■■■□ 3.63
Upf3a-201ENSMUST00000043767 Cep164Q5DU05 1446 aa37.69■■■■□ 3.62
Upf3a-201ENSMUST00000043767 Kif15Q6P9L6 1387 aa37.69■■■■□ 3.62
Upf3a-201ENSMUST00000043767 TnnQ80Z71 1560 aa37.65■■■■□ 3.62
Upf3a-201ENSMUST00000043767 Cux2P70298 1426 aa37.37■■■■□ 3.57
Upf3a-201ENSMUST00000043767 Top2aQ01320 1528 aaKnown RBP37.34■■■■□ 3.57
Upf3a-201ENSMUST00000043767 Baz1bQ9Z277 1479 aa37.32■■■■□ 3.57
Upf3a-201ENSMUST00000043767 Il27Q8K3I6 234 aa37.24■■■■□ 3.55
Upf3a-201ENSMUST00000043767 Gab3Q8BSM5 595 aa37.22■■■■□ 3.55
Upf3a-201ENSMUST00000043767 Camsap1A2AHC3 1581 aa37.21■■■■□ 3.55
Upf3a-201ENSMUST00000043767 Mrc2Q64449 1479 aa37.17■■■■□ 3.54
Upf3a-201ENSMUST00000043767 Ccdc18Q640L5 1455 aa37.13■■■■□ 3.53
Upf3a-201ENSMUST00000043767 Npm1Q61937 292 aaKnown RBP37.06■■■■□ 3.52
Upf3a-201ENSMUST00000043767 Rpgrip1Q9EPQ2 1331 aa36.93■■■■□ 3.5
Upf3a-201ENSMUST00000043767 Grin2bQ01097 1482 aa36.84■■■■□ 3.49
Upf3a-201ENSMUST00000043767 LrpprcQ6PB66 1392 aaKnown RBP36.81■■■■□ 3.48
Upf3a-201ENSMUST00000043767 Kif21aQ9QXL2 1672 aa36.78■■■■□ 3.48
Upf3a-201ENSMUST00000043767 Rapgef2Q8CHG7 1496 aa36.77■■■■□ 3.48
Upf3a-201ENSMUST00000043767 PtprkP35822 1457 aa36.76■■■■□ 3.47
Upf3a-201ENSMUST00000043767 NrkQ9R0G8 1455 aa36.7■■■■□ 3.47
Upf3a-201ENSMUST00000043767 Dhx29Q6PGC1 1365 aaKnown RBP36.68■■■■□ 3.46
Upf3a-201ENSMUST00000043767 PogzQ8BZH4 1409 aaKnown RBP36.68■■■■□ 3.46
Upf3a-201ENSMUST00000043767 Shroom4Q1W617 1475 aa36.63■■■■□ 3.45
Upf3a-201ENSMUST00000043767 Npm2Q80W85 207 aa36.62■■■■□ 3.45
Upf3a-201ENSMUST00000043767 Duox2A2AQ99 1517 aa36.57■■■■□ 3.45
Upf3a-201ENSMUST00000043767 Cep162Q6ZQ06 1403 aa36.51■■■■□ 3.44
Upf3a-201ENSMUST00000043767 Efcab5A0JP43 1406 aa36.48■■■■□ 3.43
Upf3a-201ENSMUST00000043767 Crocc2F6XLV1 1638 aa36.45■■■■□ 3.43
Upf3a-201ENSMUST00000043767 Eif4g1Q6NZJ6 1600 aaKnown RBP36.39■■■■□ 3.42
Upf3a-201ENSMUST00000043767 Arhgap35Q91YM2 1499 aa36.34■■■■□ 3.41
Upf3a-201ENSMUST00000043767 Samd9lQ69Z37 1561 aa36.33■■■■□ 3.41
Upf3a-201ENSMUST00000043767 Plb1Q3TTY0 1478 aa36.32■■■■□ 3.41
Upf3a-201ENSMUST00000043767 Lrriq1Q0P5X1 1673 aa36.3■■■■□ 3.4
Upf3a-201ENSMUST00000043767 Myt1lP97500 1187 aa36.29■■■■□ 3.4
Upf3a-201ENSMUST00000043767 Urb2E9Q7L1 1524 aaKnown RBP36.28■■■■□ 3.4
Upf3a-201ENSMUST00000043767 Zeb1Q64318 1117 aa36.23■■■■□ 3.39
Upf3a-201ENSMUST00000043767 Mroh2bQ7M6Y6 1581 aa36.22■■■■□ 3.39
Upf3a-201ENSMUST00000043767 Map3k1P53349 1493 aa36.12■■■■□ 3.37
Upf3a-201ENSMUST00000043767 Rad54l2Q99NG0 1466 aa36.12■■■■□ 3.37
Upf3a-201ENSMUST00000043767 SynmQ70IV5 1561 aa36.04■■■■□ 3.36
Upf3a-201ENSMUST00000043767 Ehmt2Q9Z148 1263 aaKnown RBP36.01■■■■□ 3.36
Upf3a-201ENSMUST00000043767 Acin1Q9JIX8 1338 aaKnown RBP36■■■■□ 3.35
Upf3a-201ENSMUST00000043767 Disp1Q3TDN0 1521 aa36■■■■□ 3.35
Upf3a-201ENSMUST00000043767 Ift140E9PY46 1464 aa35.95■■■■□ 3.35
Upf3a-201ENSMUST00000043767 Clip1Q922J3 1391 aa35.95■■■■□ 3.35
Upf3a-201ENSMUST00000043767 AqrQ8CFQ3 1481 aaKnown RBP35.91■■■■□ 3.34
Upf3a-201ENSMUST00000043767 Magi3Q9EQJ9 1476 aa35.91■■■■□ 3.34
Upf3a-201ENSMUST00000043767 Carmil1Q6EDY6 1374 aa35.87■■■■□ 3.33
Upf3a-201ENSMUST00000043767 Grin2aP35436 1464 aa35.85■■■■□ 3.33
Upf3a-201ENSMUST00000043767 Pla2r1Q62028 1487 aa35.84■■■■□ 3.33
Upf3a-201ENSMUST00000043767 Setd1bQ8CFT2 1985 aa35.77■■■■□ 3.32
Upf3a-201ENSMUST00000043767 Nup160Q9Z0W3 1402 aaKnown RBP35.76■■■■□ 3.31
Retrieved 100 of 22,080 RNA–protein pairs in 80.7 ms