RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 DEFB4AO15263 64 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 CUBNO60494 3623 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 LAMA3Q16787 3333 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 KRTAP19-8Q3LI54 63 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 LINC01556Q5JQF7 62 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 CRYBG3Q68DQ2 2970 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 DCHS2Q6V1P9 2916 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 GPR98Q8WXG9 6306 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 SPG11Q96JI7 2443 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 Q9Y3F1 56 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 TLN2Q9Y4G6 2542 aa0□□□□□ -2.41
RNU4-54P-201ENST00000516428 FSIP2Q5CZC0 6907 aa-0□□□□□ -2.41
RNU4-54P-201ENST00000516428 MGAQ8IWI9 3026 aa-0□□□□□ -2.41
RNU4-54P-201ENST00000516428 SSPOA2VEC9 5147 aa-0□□□□□ -2.41
RNU4-54P-201ENST00000516428 RELNP78509 3460 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 DMXL2Q8TDJ6 3036 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 EPG5Q9HCE0 2579 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 APELAP0DMC3 54 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 MGAM2Q2M2H8 2515 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 RIF1Q5UIP0 2472 aaKnown RBP-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 MYCBP2O75592 4640 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 KALRNO60229 2985 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 MXRA5Q9NR99 2828 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 LAMA5O15230 3695 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 ITPR3Q14573 2671 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 HSPG2P98160 4391 aa-0.01□□□□□ -2.41
RNU4-54P-201ENST00000516428 FASNP49327 2511 aaKnown RBP-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 LRRK2Q5S007 2527 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 NBEAQ8NFP9 2946 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 FAT4Q6V0I7 4981 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 UTP20O75691 2785 aaKnown RBP-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 HIVEP1P15822 2718 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 LRP1BQ9NZR2 4599 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 USP9YO00507 2555 aaPredicted RBP-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MYO18BQ8IUG5 2567 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 A0A096LPF7 62 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT2AP02795 61 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT1HL1P0DM35 61 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT1GP13640 62 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT1MQ8N339 61 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 CFAP54Q96N23 3096 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 HMCN2Q8NDA2 5059 aa-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 ANK3Q12955 4377 aaKnown RBP-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 FLNAP21333 2647 aaKnown RBP-0.02□□□□□ -2.41
RNU4-54P-201ENST00000516428 FRYLO94915 3013 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 KMT2AQ03164 3969 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 WDR87Q6ZQQ6 2873 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 ITPR1Q14643 2758 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 DSTQ03001 7570 aaKnown RBP-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 MT4P47944 62 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 LPAP08519 4548 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 MAP1AP78559 2803 aaPredicted RBP-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 NIPBLQ6KC79 2804 aaeCLIP-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 CSMD1Q96PZ7 3565 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 ATMQ13315 3056 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 STAB2Q8WWQ8 2551 aa-0.03□□□□□ -2.41
RNU4-54P-201ENST00000516428 LOC400499M0QZD8 3231 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 ZFHX4Q86UP3 3567 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 BSNQ9UPA5 3926 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 LYSTQ99698 3801 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 LAMA2P24043 3122 aaKnown RBP-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 TEX15Q9BXT5 2789 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 CEP250Q9BV73 2442 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 ADGRG4Q8IZF6 3080 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 SRCAPQ6ZRS2 3230 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 USP9XQ93008 2570 aaPredicted RBP-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 NBPF19A0A087WUL8 3843 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 KRTAP20-2Q3LI61 65 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 FREM2Q5SZK8 3169 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 EYSQ5T1H1 3165 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 C5orf42Q9H799 3197 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 SZT2Q5T011 3432 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 DNAH12Q6ZR08 3092 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 XIRP2A4UGR9 3374 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 ANK2Q01484 3957 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 DCHS1Q96JQ0 3298 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 NBEAL1Q6ZS30 2694 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 LRP2P98164 4655 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 WDFY4Q6ZS81 3184 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 PKD1P98161 4303 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 FAT2Q9NYQ8 4349 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 HECTD4Q9Y4D8 3996 aa-0.04□□□□□ -2.42
RNU4-54P-201ENST00000516428 SPENQ96T58 3664 aaKnown RBP-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 PKHD1L1Q86WI1 4243 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 MUC3AQ02505 3323 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 SPTAN1Q13813 2472 aaKnown RBP-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 FLGP20930 4061 aaPredicted RBP-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 MYO15AQ9UKN7 3530 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 CSMD2Q7Z408 3487 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 PRUNE2Q8WUY3 3088 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 MT1BP07438 61 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 DEFB108BQ8NET1 73 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 COX14Q96I36 57 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 MKI67P46013 3256 aaKnown RBP-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 PRKDCP78527 4128 aaKnown RBP-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 LRBAP50851 2863 aa-0.05□□□□□ -2.42
RNU4-54P-201ENST00000516428 FAT3Q8TDW7 4589 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 CMYA5Q8N3K9 4069 aa-0.06□□□□□ -2.42
RNU4-54P-201ENST00000516428 DOPEY1Q5JWR5 2465 aa-0.06□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms