RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 POTEDQ86YR6 584 aa3.27□□□□□ -1.89
RNU4-54P-201ENST00000516428 AEBP2Q6ZN18 517 aaPredicted RBP3.21□□□□□ -1.9
RNU4-54P-201ENST00000516428 CHIC1Q5VXU3 224 aa2.96□□□□□ -1.94
RNU4-54P-201ENST00000516428 SENP3Q9H4L4 574 aaPredicted RBP2.79□□□□□ -1.96
RNU4-54P-201ENST00000516428 PHF23Q9BUL5 403 aaPredicted RBP2.68□□□□□ -1.98
RNU4-54P-201ENST00000516428 FOXD1Q16676 465 aa2.65□□□□□ -1.99
RNU4-54P-201ENST00000516428 MSH5O43196 834 aa2.63□□□□□ -1.99
RNU4-54P-201ENST00000516428 CACNB1Q02641 598 aaPredicted RBP2.46□□□□□ -2.02
RNU4-54P-201ENST00000516428 POTEHQ6S545 545 aa2.46□□□□□ -2.02
RNU4-54P-201ENST00000516428 PIAS4Q8N2W9 510 aaPredicted RBP2.34□□□□□ -2.03
RNU4-54P-201ENST00000516428 PLPPR3Q6T4P5 718 aa2.25□□□□□ -2.05
RNU4-54P-201ENST00000516428 RNF39Q9H2S5 420 aa2.23□□□□□ -2.05
RNU4-54P-201ENST00000516428 C1QBPQ07021 282 aaKnown RBP2.16□□□□□ -2.06
RNU4-54P-201ENST00000516428 PPP6R1Q9UPN7 881 aa2.16□□□□□ -2.06
RNU4-54P-201ENST00000516428 DMRT2Q9Y5R5 561 aa2.16□□□□□ -2.06
RNU4-54P-201ENST00000516428 PLSCR2Q9NRY7 297 aa2.14□□□□□ -2.07
RNU4-54P-201ENST00000516428 SP7Q8TDD2 431 aaPredicted RBP2.12□□□□□ -2.07
RNU4-54P-201ENST00000516428 SCAF1Q9H7N4 1312 aaKnown RBP2.12□□□□□ -2.07
RNU4-54P-201ENST00000516428 ADRA2BP18089 450 aa2.11□□□□□ -2.07
RNU4-54P-201ENST00000516428 MAPK8IP2Q13387 824 aaPredicted RBP2.05□□□□□ -2.08
RNU4-54P-201ENST00000516428 DNAJC5BQ9UF47 199 aa1.99□□□□□ -2.09
RNU4-54P-201ENST00000516428 DCAF8L1A6NGE4 600 aa1.98□□□□□ -2.09
RNU4-54P-201ENST00000516428 NCBP3Q53F19 620 aaKnown RBP1.98□□□□□ -2.09
RNU4-54P-201ENST00000516428 LHX8Q68G74 356 aa1.97□□□□□ -2.09
RNU4-54P-201ENST00000516428 CHRDL2Q6WN34 429 aa1.96□□□□□ -2.1
RNU4-54P-201ENST00000516428 HOXD11P31277 338 aaPredicted RBP1.94□□□□□ -2.1
RNU4-54P-201ENST00000516428 DSG3P32926 999 aa1.94□□□□□ -2.1
RNU4-54P-201ENST00000516428 APLP2Q06481 763 aa1.93□□□□□ -2.1
RNU4-54P-201ENST00000516428 CNKSR2Q8WXI2 1034 aa1.93□□□□□ -2.1
RNU4-54P-201ENST00000516428 PPP4R3CPQ6ZMV5 832 aa1.9□□□□□ -2.11
RNU4-54P-201ENST00000516428 RNF216Q9NWF9 866 aaPredicted RBP1.9□□□□□ -2.11
RNU4-54P-201ENST00000516428 PCDH10Q9P2E7 1040 aa1.89□□□□□ -2.11
RNU4-54P-201ENST00000516428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP1.88□□□□□ -2.11
RNU4-54P-201ENST00000516428 HNRNPUL2Q1KMD3 747 aaKnown RBP1.88□□□□□ -2.11
RNU4-54P-201ENST00000516428 POTEMA6NI47 508 aa1.87□□□□□ -2.11
RNU4-54P-201ENST00000516428 HAX1O00165 279 aa1.86□□□□□ -2.11
RNU4-54P-201ENST00000516428 EVX2Q03828 476 aa1.86□□□□□ -2.11
RNU4-54P-201ENST00000516428 GRWD1Q9BQ67 446 aaKnown RBP eCLIP1.86□□□□□ -2.11
RNU4-54P-201ENST00000516428 POTEGQ6S5H5 508 aa1.85□□□□□ -2.11
RNU4-54P-201ENST00000516428 RBM42Q9BTD8 480 aaKnown RBP1.84□□□□□ -2.11
RNU4-54P-201ENST00000516428 PIP4P2Q8N4L2 257 aa1.83□□□□□ -2.12
RNU4-54P-201ENST00000516428 SPINK5Q9NQ38 1064 aaPredicted RBP1.82□□□□□ -2.12
RNU4-54P-201ENST00000516428 SAMD1Q6SPF0 538 aaPredicted RBP1.81□□□□□ -2.12
RNU4-54P-201ENST00000516428 ZNF219Q9P2Y4 722 aaPredicted RBP1.8□□□□□ -2.12
RNU4-54P-201ENST00000516428 CAPN15O75808 1086 aa1.79□□□□□ -2.12
RNU4-54P-201ENST00000516428 GABBR2O75899 941 aa1.78□□□□□ -2.12
RNU4-54P-201ENST00000516428 FXR2P51116 673 aaKnown RBP eCLIP1.78□□□□□ -2.12
RNU4-54P-201ENST00000516428 ZBTB12Q9Y330 459 aaPredicted RBP1.78□□□□□ -2.12
RNU4-54P-201ENST00000516428 NPM3O75607 178 aaKnown RBP1.77□□□□□ -2.13
RNU4-54P-201ENST00000516428 OTUD5Q96G74 571 aa1.77□□□□□ -2.13
RNU4-54P-201ENST00000516428 POTEIP0CG38 1075 aa1.76□□□□□ -2.13
RNU4-54P-201ENST00000516428 LCE2DQ5TA82 110 aaPredicted RBP1.75□□□□□ -2.13
RNU4-54P-201ENST00000516428 U3KPZ7 1027 aaPredicted RBP1.74□□□□□ -2.13
RNU4-54P-201ENST00000516428 C19orf67A6NJJ6 358 aa1.73□□□□□ -2.13
RNU4-54P-201ENST00000516428 MYCNP04198 464 aaPredicted RBP1.73□□□□□ -2.13
RNU4-54P-201ENST00000516428 TRHP20396 242 aaPredicted RBP1.73□□□□□ -2.13
RNU4-54P-201ENST00000516428 ABCB7O75027 752 aa1.72□□□□□ -2.13
RNU4-54P-201ENST00000516428 AKT1S1Q96B36 256 aa1.72□□□□□ -2.13
RNU4-54P-201ENST00000516428 KCNA4P22459 653 aa1.7□□□□□ -2.14
RNU4-54P-201ENST00000516428 FBLN2P98095 1184 aa1.7□□□□□ -2.14
RNU4-54P-201ENST00000516428 MMRN1Q13201 1228 aa1.7□□□□□ -2.14
RNU4-54P-201ENST00000516428 SLC4A1APQ9BWU0 796 aaKnown RBP1.7□□□□□ -2.14
RNU4-54P-201ENST00000516428 POTEB2H3BUK9 544 aa1.69□□□□□ -2.14
RNU4-54P-201ENST00000516428 PITPNM1O00562 1244 aa1.69□□□□□ -2.14
RNU4-54P-201ENST00000516428 ATXN8OSP0DMR3 200 aa1.69□□□□□ -2.14
RNU4-54P-201ENST00000516428 REM2Q8IYK8 340 aaPredicted RBP1.69□□□□□ -2.14
RNU4-54P-201ENST00000516428 FOXD4L1Q9NU39 408 aa1.69□□□□□ -2.14
RNU4-54P-201ENST00000516428 CDAN1Q8IWY9 1227 aa1.67□□□□□ -2.14
RNU4-54P-201ENST00000516428 POLA2Q14181 598 aa1.66□□□□□ -2.14
RNU4-54P-201ENST00000516428 SPNS2Q8IVW8 549 aa1.66□□□□□ -2.14
RNU4-54P-201ENST00000516428 PLEKHG5O94827 1062 aa1.65□□□□□ -2.15
RNU4-54P-201ENST00000516428 CLCN6P51797 869 aa1.65□□□□□ -2.15
RNU4-54P-201ENST00000516428 SPDYE2BA6NHP3 402 aa1.64□□□□□ -2.15
RNU4-54P-201ENST00000516428 SPDYE6P0CI01 402 aa1.64□□□□□ -2.15
RNU4-54P-201ENST00000516428 SPDYE2Q495Y8 402 aa1.64□□□□□ -2.15
RNU4-54P-201ENST00000516428 SLC4A2P04920 1241 aa1.63□□□□□ -2.15
RNU4-54P-201ENST00000516428 SPDYE1Q8NFV5 336 aaPredicted RBP1.63□□□□□ -2.15
RNU4-54P-201ENST00000516428 STAG3Q9UJ98 1225 aa1.63□□□□□ -2.15
RNU4-54P-201ENST00000516428 PAK3O75914 559 aaPredicted RBP1.62□□□□□ -2.15
RNU4-54P-201ENST00000516428 POTEJP0CG39 1038 aa1.62□□□□□ -2.15
RNU4-54P-201ENST00000516428 PRKAR2AP13861 404 aaKnown RBP1.62□□□□□ -2.15
RNU4-54P-201ENST00000516428 FAM163AQ96GL9 167 aaPredicted RBP1.62□□□□□ -2.15
RNU4-54P-201ENST00000516428 ZNF692Q9BU19 519 aaPredicted RBP1.62□□□□□ -2.15
RNU4-54P-201ENST00000516428 DCBLD2Q96PD2 775 aa1.61□□□□□ -2.15
RNU4-54P-201ENST00000516428 PRR29P0C7W0 189 aa1.6□□□□□ -2.15
RNU4-54P-201ENST00000516428 ZBTB47Q9UFB7 747 aaPredicted RBP1.59□□□□□ -2.15
RNU4-54P-201ENST00000516428 CLEC11AQ9Y240 323 aa1.59□□□□□ -2.15
RNU4-54P-201ENST00000516428 NPM1P06748 294 aaKnown RBP eCLIP1.58□□□□□ -2.16
RNU4-54P-201ENST00000516428 MAMSTRQ6ZN01 415 aa1.57□□□□□ -2.16
RNU4-54P-201ENST00000516428 OSCARQ8IYS5 282 aa1.57□□□□□ -2.16
RNU4-54P-201ENST00000516428 PABPN1Q86U42 306 aaKnown RBP eCLIP1.55□□□□□ -2.16
RNU4-54P-201ENST00000516428 LOC100996750A0A140TA64 210 aa1.54□□□□□ -2.16
RNU4-54P-201ENST00000516428 CD44P16070 742 aaKnown RBP1.54□□□□□ -2.16
RNU4-54P-201ENST00000516428 PELP1Q8IZL8 1130 aaKnown RBP1.54□□□□□ -2.16
RNU4-54P-201ENST00000516428 ZNF579Q8NAF0 562 aaKnown RBP1.54□□□□□ -2.16
RNU4-54P-201ENST00000516428 KRTAP4-6Q9BYQ5 205 aa1.54□□□□□ -2.16
RNU4-54P-201ENST00000516428 FBXO3Q9UK99 471 aa1.54□□□□□ -2.16
RNU4-54P-201ENST00000516428 SPDYE4A6NLX3 237 aa1.53□□□□□ -2.16
RNU4-54P-201ENST00000516428 ST18O60284 1047 aa1.53□□□□□ -2.16
RNU4-54P-201ENST00000516428 SCUBE2Q9NQ36 999 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms