RNA–Protein interactions for RNA: ENST00000476742.1

NPHP3-207, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 650 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-207ENST00000476742 NSD1Q96L73 2696 aaPredicted RBP0.24□□□□□ -2.37
NPHP3-207ENST00000476742 USP9YO00507 2555 aaPredicted RBP0.24□□□□□ -2.37
NPHP3-207ENST00000476742 PRKDCP78527 4128 aaKnown RBP0.23□□□□□ -2.37
NPHP3-207ENST00000476742 KMT2AQ03164 3969 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 KRTAP6-2Q3LI66 62 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 VPS13BQ7Z7G8 4022 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 CFAP54Q96N23 3096 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 KALRNO60229 2985 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 FAT2Q9NYQ8 4349 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 GPR98Q8WXG9 6306 aa0.23□□□□□ -2.37
NPHP3-207ENST00000476742 FASNP49327 2511 aaKnown RBP0.22□□□□□ -2.37
NPHP3-207ENST00000476742 TLN2Q9Y4G6 2542 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 ZFHX4Q86UP3 3567 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 KRTAP19-5Q3LI72 72 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 SPRR2FQ96RM1 72 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 HIVEP1P15822 2718 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 IGSF10Q6WRI0 2623 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 MYO18BQ8IUG5 2567 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 MGAM2Q2M2H8 2515 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 TGP01266 2768 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 TRIOO75962 3097 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 LAMA1P25391 3075 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 ADGRG4Q8IZF6 3080 aa0.22□□□□□ -2.37
NPHP3-207ENST00000476742 DMXL2Q8TDJ6 3036 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 USP9XQ93008 2570 aaPredicted RBP0.21□□□□□ -2.38
NPHP3-207ENST00000476742 PRUNE2Q8WUY3 3088 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 ITPR1Q14643 2758 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 TEX15Q9BXT5 2789 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 DEFB4AO15263 64 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 MT1EP04732 61 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 MT1HP80294 61 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 LRBAP50851 2863 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 MXRA5Q9NR99 2828 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 FRYLO94915 3013 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 SACSQ9NZJ4 4579 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 DOPEY1Q5JWR5 2465 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 CFAP46Q8IYW2 2715 aa0.21□□□□□ -2.38
NPHP3-207ENST00000476742 CUBNO60494 3623 aa0.2□□□□□ -2.38
NPHP3-207ENST00000476742 DNAH12Q6ZR08 3092 aa0.2□□□□□ -2.38
NPHP3-207ENST00000476742 NBPF19A0A087WUL8 3843 aa0.2□□□□□ -2.38
NPHP3-207ENST00000476742 RANBP2P49792 3224 aaKnown RBP0.2□□□□□ -2.38
NPHP3-207ENST00000476742 FLGP20930 4061 aaPredicted RBP0.2□□□□□ -2.38
NPHP3-207ENST00000476742 HTTP42858 3142 aa0.2□□□□□ -2.38
NPHP3-207ENST00000476742 SPTAN1Q13813 2472 aaKnown RBP0.2□□□□□ -2.38
NPHP3-207ENST00000476742 ATMQ13315 3056 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 FLNAP21333 2647 aaKnown RBP0.19□□□□□ -2.38
NPHP3-207ENST00000476742 SPENQ96T58 3664 aaKnown RBP0.19□□□□□ -2.38
NPHP3-207ENST00000476742 C5orf42Q9H799 3197 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 HECTD4Q9Y4D8 3996 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 DNAH3Q8TD57 4116 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 MT1LQ93083 61 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 HUWE1Q7Z6Z7 4374 aaKnown RBP0.19□□□□□ -2.38
NPHP3-207ENST00000476742 TEP1Q99973 2627 aaKnown RBP0.19□□□□□ -2.38
NPHP3-207ENST00000476742 SPTBN5Q9NRC6 3674 aaKnown RBP0.19□□□□□ -2.38
NPHP3-207ENST00000476742 CENPEQ02224 2701 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 NBEAL1Q6ZS30 2694 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 AKAP9Q99996 3911 aa0.19□□□□□ -2.38
NPHP3-207ENST00000476742 DNAH7Q8WXX0 4024 aa0.18□□□□□ -2.38
NPHP3-207ENST00000476742 SYNE1Q8NF91 8797 aaKnown RBP0.18□□□□□ -2.38
NPHP3-207ENST00000476742 NIPBLQ6KC79 2804 aaeCLIP0.18□□□□□ -2.38
NPHP3-207ENST00000476742 LAMA5O15230 3695 aa0.18□□□□□ -2.38
NPHP3-207ENST00000476742 VPS13DQ5THJ4 4388 aa0.18□□□□□ -2.38
NPHP3-207ENST00000476742 LAMA3Q16787 3333 aa0.18□□□□□ -2.38
NPHP3-207ENST00000476742 HSPG2P98160 4391 aa0.17□□□□□ -2.38
NPHP3-207ENST00000476742 PKHD1L1Q86WI1 4243 aa0.17□□□□□ -2.38
NPHP3-207ENST00000476742 PKD1P98161 4303 aa0.17□□□□□ -2.38
NPHP3-207ENST00000476742 DYNC2H1Q8NCM8 4307 aaKnown RBP0.17□□□□□ -2.38
NPHP3-207ENST00000476742 DNAH11Q96DT5 4516 aa0.17□□□□□ -2.38
NPHP3-207ENST00000476742 SYNE2Q8WXH0 6885 aaKnown RBP0.17□□□□□ -2.38
NPHP3-207ENST00000476742 SVEP1Q4LDE5 3571 aa0.17□□□□□ -2.38
NPHP3-207ENST00000476742 MAP1AP78559 2803 aaPredicted RBP0.17□□□□□ -2.38
NPHP3-207ENST00000476742 COL6A3P12111 3177 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 CSMD1Q96PZ7 3565 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 ITPR2Q14571 2701 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 LPAP08519 4548 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 LRP1Q07954 4544 aaKnown RBP0.16□□□□□ -2.38
NPHP3-207ENST00000476742 MYCBP2O75592 4640 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 ANK3Q12955 4377 aaKnown RBP0.16□□□□□ -2.38
NPHP3-207ENST00000476742 MT1XP80297 61 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 FSIP2Q5CZC0 6907 aa0.16□□□□□ -2.38
NPHP3-207ENST00000476742 CEP295Q9C0D2 2601 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 SPRR2GQ9BYE4 73 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 DNAH6Q9C0G6 4158 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 STAB2Q8WWQ8 2551 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 DNAH2Q9P225 4427 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 TLN1Q9Y490 2541 aaKnown RBP0.15□□□□□ -2.39
NPHP3-207ENST00000476742 SRCAPQ6ZRS2 3230 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 HMCN2Q8NDA2 5059 aa0.15□□□□□ -2.39
NPHP3-207ENST00000476742 SMG1Q96Q15 3661 aaKnown RBP0.14□□□□□ -2.39
NPHP3-207ENST00000476742 FREM2Q5SZK8 3169 aa0.14□□□□□ -2.39
NPHP3-207ENST00000476742 MKI67P46013 3256 aaKnown RBP0.14□□□□□ -2.39
NPHP3-207ENST00000476742 RELNP78509 3460 aa0.14□□□□□ -2.39
NPHP3-207ENST00000476742 LAMA2P24043 3122 aaKnown RBP0.13□□□□□ -2.39
NPHP3-207ENST00000476742 CEP350Q5VT06 3117 aa0.13□□□□□ -2.39
NPHP3-207ENST00000476742 PKHD1P08F94 4074 aa0.13□□□□□ -2.39
NPHP3-207ENST00000476742 CMYA5Q8N3K9 4069 aa0.13□□□□□ -2.39
NPHP3-207ENST00000476742 BOD1L1Q8NFC6 3051 aa0.13□□□□□ -2.39
NPHP3-207ENST00000476742 DNAH1Q9P2D7 4330 aa0.13□□□□□ -2.39
NPHP3-207ENST00000476742 TRRAPQ9Y4A5 3859 aa0.13□□□□□ -2.39
NPHP3-207ENST00000476742 MT1HL1P0DM35 61 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms