RNA–Protein interactions for RNA: ENST00000476742.1

NPHP3-207, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 650 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-207ENST00000476742 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
NPHP3-207ENST00000476742 CHIC1Q5VXU3 224 aa21.63■■□□□ 1.05
NPHP3-207ENST00000476742 POTEDQ86YR6 584 aa20.04■□□□□ 0.8
NPHP3-207ENST00000476742 SENP3Q9H4L4 574 aaPredicted RBP20■□□□□ 0.79
NPHP3-207ENST00000476742 PHF23Q9BUL5 403 aaPredicted RBP19.52■□□□□ 0.72
NPHP3-207ENST00000476742 FOXD1Q16676 465 aa18.78■□□□□ 0.6
NPHP3-207ENST00000476742 MSH5O43196 834 aa18.15■□□□□ 0.5
NPHP3-207ENST00000476742 PIAS4Q8N2W9 510 aaPredicted RBP17.19■□□□□ 0.34
NPHP3-207ENST00000476742 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
NPHP3-207ENST00000476742 CACNB1Q02641 598 aaPredicted RBP16.37■□□□□ 0.21
NPHP3-207ENST00000476742 ADRA2BP18089 450 aa16.32■□□□□ 0.2
NPHP3-207ENST00000476742 PLPPR3Q6T4P5 718 aa15.88■□□□□ 0.13
NPHP3-207ENST00000476742 DMRT2Q9Y5R5 561 aa15.64■□□□□ 0.09
NPHP3-207ENST00000476742 POTEHQ6S545 545 aa15.43■□□□□ 0.06
NPHP3-207ENST00000476742 MAPK8IP2Q13387 824 aaPredicted RBP15.41■□□□□ 0.06
NPHP3-207ENST00000476742 RNF39Q9H2S5 420 aa15.35■□□□□ 0.05
NPHP3-207ENST00000476742 C1QBPQ07021 282 aaKnown RBP15.06■□□□□ 0
NPHP3-207ENST00000476742 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
NPHP3-207ENST00000476742 DCAF8L1A6NGE4 600 aa14.98□□□□□ -0.01
NPHP3-207ENST00000476742 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
NPHP3-207ENST00000476742 DNAJC5BQ9UF47 199 aa14.38□□□□□ -0.11
NPHP3-207ENST00000476742 RNF216Q9NWF9 866 aaPredicted RBP14.05□□□□□ -0.16
NPHP3-207ENST00000476742 DSG3P32926 999 aa13.89□□□□□ -0.19
NPHP3-207ENST00000476742 SP7Q8TDD2 431 aaPredicted RBP13.82□□□□□ -0.2
NPHP3-207ENST00000476742 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
NPHP3-207ENST00000476742 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.79□□□□□ -0.2
NPHP3-207ENST00000476742 PPP4R3CPQ6ZMV5 832 aa13.72□□□□□ -0.21
NPHP3-207ENST00000476742 CAPN15O75808 1086 aa13.6□□□□□ -0.23
NPHP3-207ENST00000476742 SPINK5Q9NQ38 1064 aaPredicted RBP13.56□□□□□ -0.24
NPHP3-207ENST00000476742 CHRDL2Q6WN34 429 aa13.55□□□□□ -0.24
NPHP3-207ENST00000476742 U3KPZ7 1027 aaPredicted RBP13.37□□□□□ -0.27
NPHP3-207ENST00000476742 RBM42Q9BTD8 480 aaKnown RBP13.32□□□□□ -0.28
NPHP3-207ENST00000476742 PLSCR2Q9NRY7 297 aa13.23□□□□□ -0.29
NPHP3-207ENST00000476742 ABCB7O75027 752 aa13.14□□□□□ -0.31
NPHP3-207ENST00000476742 HAX1O00165 279 aa13.04□□□□□ -0.32
NPHP3-207ENST00000476742 TRHP20396 242 aaPredicted RBP13.04□□□□□ -0.32
NPHP3-207ENST00000476742 ZNF219Q9P2Y4 722 aaPredicted RBP13.02□□□□□ -0.33
NPHP3-207ENST00000476742 LHX8Q68G74 356 aa12.93□□□□□ -0.34
NPHP3-207ENST00000476742 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
NPHP3-207ENST00000476742 APLP2Q06481 763 aa12.88□□□□□ -0.35
NPHP3-207ENST00000476742 NCBP3Q53F19 620 aaKnown RBP12.79□□□□□ -0.36
NPHP3-207ENST00000476742 EVX2Q03828 476 aa12.77□□□□□ -0.37
NPHP3-207ENST00000476742 AKT1S1Q96B36 256 aa12.71□□□□□ -0.37
NPHP3-207ENST00000476742 FXR2P51116 673 aaKnown RBP eCLIP12.64□□□□□ -0.39
NPHP3-207ENST00000476742 NPM3O75607 178 aaKnown RBP12.58□□□□□ -0.4
NPHP3-207ENST00000476742 REM2Q8IYK8 340 aaPredicted RBP12.57□□□□□ -0.4
NPHP3-207ENST00000476742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-207ENST00000476742 HNRNPUL2Q1KMD3 747 aaKnown RBP12.54□□□□□ -0.4
NPHP3-207ENST00000476742 PITPNM1O00562 1244 aa12.44□□□□□ -0.42
NPHP3-207ENST00000476742 GABBR2O75899 941 aa12.43□□□□□ -0.42
NPHP3-207ENST00000476742 SAMD1Q6SPF0 538 aaPredicted RBP12.4□□□□□ -0.42
NPHP3-207ENST00000476742 SLC4A2P04920 1241 aa12.39□□□□□ -0.43
NPHP3-207ENST00000476742 POLA2Q14181 598 aa12.39□□□□□ -0.43
NPHP3-207ENST00000476742 C19orf67A6NJJ6 358 aa12.29□□□□□ -0.44
NPHP3-207ENST00000476742 POTEMA6NI47 508 aa12.25□□□□□ -0.45
NPHP3-207ENST00000476742 PCDH10Q9P2E7 1040 aa12.19□□□□□ -0.46
NPHP3-207ENST00000476742 POTEIP0CG38 1075 aa12.15□□□□□ -0.46
NPHP3-207ENST00000476742 POTEGQ6S5H5 508 aa12.15□□□□□ -0.46
NPHP3-207ENST00000476742 PRKAR2AP13861 404 aaKnown RBP12.09□□□□□ -0.47
NPHP3-207ENST00000476742 ZBTB12Q9Y330 459 aaPredicted RBP12.08□□□□□ -0.48
NPHP3-207ENST00000476742 OSCARQ8IYS5 282 aa12.05□□□□□ -0.48
NPHP3-207ENST00000476742 OTUD5Q96G74 571 aa11.97□□□□□ -0.49
NPHP3-207ENST00000476742 KCNA4P22459 653 aa11.86□□□□□ -0.51
NPHP3-207ENST00000476742 CLCN6P51797 869 aa11.84□□□□□ -0.51
NPHP3-207ENST00000476742 DCBLD2Q96PD2 775 aa11.79□□□□□ -0.52
NPHP3-207ENST00000476742 SPDYE1Q8NFV5 336 aaPredicted RBP11.72□□□□□ -0.53
NPHP3-207ENST00000476742 POTEB2H3BUK9 544 aa11.71□□□□□ -0.53
NPHP3-207ENST00000476742 CLEC11AQ9Y240 323 aa11.71□□□□□ -0.53
NPHP3-207ENST00000476742 MYCNP04198 464 aaPredicted RBP11.69□□□□□ -0.54
NPHP3-207ENST00000476742 CD44P16070 742 aaKnown RBP11.64□□□□□ -0.55
NPHP3-207ENST00000476742 CHADLQ6NUI6 762 aa11.63□□□□□ -0.55
NPHP3-207ENST00000476742 LCE2DQ5TA82 110 aaPredicted RBP11.61□□□□□ -0.55
NPHP3-207ENST00000476742 SPDYE2BA6NHP3 402 aa11.59□□□□□ -0.55
NPHP3-207ENST00000476742 SPDYE6P0CI01 402 aa11.59□□□□□ -0.55
NPHP3-207ENST00000476742 SPDYE2Q495Y8 402 aa11.59□□□□□ -0.55
NPHP3-207ENST00000476742 ATF5Q9Y2D1 282 aaPredicted RBP11.49□□□□□ -0.57
NPHP3-207ENST00000476742 FAM163AQ96GL9 167 aaPredicted RBP11.45□□□□□ -0.58
NPHP3-207ENST00000476742 ZNF579Q8NAF0 562 aaKnown RBP11.43□□□□□ -0.58
NPHP3-207ENST00000476742 CDAN1Q8IWY9 1227 aa11.4□□□□□ -0.58
NPHP3-207ENST00000476742 FARP1Q9Y4F1 1045 aaPredicted RBP11.37□□□□□ -0.59
NPHP3-207ENST00000476742 MAMSTRQ6ZN01 415 aa11.36□□□□□ -0.59
NPHP3-207ENST00000476742 PRR29P0C7W0 189 aa11.35□□□□□ -0.59
NPHP3-207ENST00000476742 SLC4A1APQ9BWU0 796 aaKnown RBP11.35□□□□□ -0.59
NPHP3-207ENST00000476742 GALR2O43603 387 aaPredicted RBP11.34□□□□□ -0.59
NPHP3-207ENST00000476742 POTEJP0CG39 1038 aa11.32□□□□□ -0.6
NPHP3-207ENST00000476742 MMRN1Q13201 1228 aa11.29□□□□□ -0.6
NPHP3-207ENST00000476742 SSUH2Q9Y2M2 353 aa11.28□□□□□ -0.6
NPHP3-207ENST00000476742 PELP1Q8IZL8 1130 aaKnown RBP11.25□□□□□ -0.61
NPHP3-207ENST00000476742 ZRANB1Q9UGI0 708 aa11.24□□□□□ -0.61
NPHP3-207ENST00000476742 METRNQ9UJH8 293 aa11.19□□□□□ -0.62
NPHP3-207ENST00000476742 ZNF692Q9BU19 519 aaPredicted RBP11.18□□□□□ -0.62
NPHP3-207ENST00000476742 SCUBE2Q9NQ36 999 aa11.18□□□□□ -0.62
NPHP3-207ENST00000476742 SPNS2Q8IVW8 549 aa11.17□□□□□ -0.62
NPHP3-207ENST00000476742 FBLN2P98095 1184 aa11.16□□□□□ -0.62
NPHP3-207ENST00000476742 C7P10643 843 aa11.14□□□□□ -0.63
NPHP3-207ENST00000476742 SLC39A7Q92504 469 aa11.13□□□□□ -0.63
NPHP3-207ENST00000476742 ASTLQ6HA08 431 aaPredicted RBP11.05□□□□□ -0.64
NPHP3-207ENST00000476742 EHMT2Q96KQ7 1210 aa11.04□□□□□ -0.64
NPHP3-207ENST00000476742 PABPN1Q86U42 306 aaKnown RBP eCLIP10.98□□□□□ -0.65
NPHP3-207ENST00000476742 ATMINO43313 823 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms