RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LOC101927531A0A1B0GV80 90 aa1.98□□□□□ -2.09
VPS29-202ENST00000447578 LIMD2Q9BT23 127 aa1.98□□□□□ -2.09
VPS29-202ENST00000447578 FLNBO75369 2602 aaKnown RBP1.97□□□□□ -2.09
VPS29-202ENST00000447578 STAB1Q9NY15 2570 aa1.97□□□□□ -2.09
VPS29-202ENST00000447578 KRTAP21-3Q3LHN1 58 aa1.97□□□□□ -2.09
VPS29-202ENST00000447578 LCA10Q71F78 164 aa1.97□□□□□ -2.09
VPS29-202ENST00000447578 PRR15LQ9BU68 103 aa1.97□□□□□ -2.09
VPS29-202ENST00000447578 DNAH10Q8IVF4 4471 aa1.97□□□□□ -2.09
VPS29-202ENST00000447578 CHKB-CPT1BH3BT56 60 aa1.96□□□□□ -2.1
VPS29-202ENST00000447578 LINC01554Q52M75 96 aa1.96□□□□□ -2.1
VPS29-202ENST00000447578 Q5VV11 94 aa1.96□□□□□ -2.1
VPS29-202ENST00000447578 PRO2289Q9P1D8 64 aa1.96□□□□□ -2.1
VPS29-202ENST00000447578 VPS13DQ5THJ4 4388 aa1.95□□□□□ -2.1
VPS29-202ENST00000447578 SPINK1P00995 79 aa1.95□□□□□ -2.1
VPS29-202ENST00000447578 SMR3BP02814 79 aaPredicted RBP1.95□□□□□ -2.1
VPS29-202ENST00000447578 SPAG11AQ6PDA7 123 aa1.95□□□□□ -2.1
VPS29-202ENST00000447578 ACYP2P14621 99 aa1.94□□□□□ -2.1
VPS29-202ENST00000447578 LINC01558Q9Y6Z2 57 aa1.94□□□□□ -2.1
VPS29-202ENST00000447578 DNAH17Q9UFH2 4485 aa1.93□□□□□ -2.1
VPS29-202ENST00000447578 PKD1L1Q8TDX9 2849 aa1.93□□□□□ -2.1
VPS29-202ENST00000447578 DMAC1Q96GE9 116 aa1.93□□□□□ -2.1
VPS29-202ENST00000447578 NOTCH1P46531 2555 aa1.93□□□□□ -2.1
VPS29-202ENST00000447578 COL6A5A8TX70 2615 aa1.92□□□□□ -2.1
VPS29-202ENST00000447578 RPS29P62273 56 aaKnown RBP1.92□□□□□ -2.1
VPS29-202ENST00000447578 TPRXLQ17RH7 258 aa1.91□□□□□ -2.1
VPS29-202ENST00000447578 C7orf65Q6ZTY9 151 aa1.91□□□□□ -2.1
VPS29-202ENST00000447578 DNAH8Q96JB1 4490 aa1.91□□□□□ -2.1
VPS29-202ENST00000447578 MGAM2Q2M2H8 2515 aa1.91□□□□□ -2.1
VPS29-202ENST00000447578 ALMS1Q8TCU4 4167 aa1.91□□□□□ -2.1
VPS29-202ENST00000447578 PLECQ15149 4684 aaKnown RBP1.9□□□□□ -2.11
VPS29-202ENST00000447578 C9orf92A6NGG3 77 aa1.9□□□□□ -2.11
VPS29-202ENST00000447578 SPINK7P58062 85 aa1.9□□□□□ -2.11
VPS29-202ENST00000447578 SPTSSBQ8NFR3 76 aa1.9□□□□□ -2.11
VPS29-202ENST00000447578 DNAH2Q9P225 4427 aa1.89□□□□□ -2.11
VPS29-202ENST00000447578 A0A1B0GU69 56 aa1.89□□□□□ -2.11
VPS29-202ENST00000447578 KRTAP10-4P60372 401 aaPredicted RBP1.89□□□□□ -2.11
VPS29-202ENST00000447578 CDC42SE1Q9NRR8 79 aa1.89□□□□□ -2.11
VPS29-202ENST00000447578 NBEAL1Q6ZS30 2694 aa1.89□□□□□ -2.11
VPS29-202ENST00000447578 STAB2Q8WWQ8 2551 aa1.88□□□□□ -2.11
VPS29-202ENST00000447578 STARD9Q9P2P6 4700 aa1.88□□□□□ -2.11
VPS29-202ENST00000447578 ATP11AUNQ6ZP68 121 aa1.88□□□□□ -2.11
VPS29-202ENST00000447578 CRCT1Q9UGL9 99 aa1.88□□□□□ -2.11
VPS29-202ENST00000447578 DNAH6Q9C0G6 4158 aa1.88□□□□□ -2.11
VPS29-202ENST00000447578 PRKDCP78527 4128 aaKnown RBP1.88□□□□□ -2.11
VPS29-202ENST00000447578 DNAH7Q8WXX0 4024 aa1.87□□□□□ -2.11
VPS29-202ENST00000447578 LYSTQ99698 3801 aa1.87□□□□□ -2.11
VPS29-202ENST00000447578 DNAH11Q96DT5 4516 aa1.86□□□□□ -2.11
VPS29-202ENST00000447578 COL7A1Q02388 2944 aa1.85□□□□□ -2.11
VPS29-202ENST00000447578 A6NN06 94 aa1.85□□□□□ -2.11
VPS29-202ENST00000447578 MIR22HGQ0VDD5 57 aa1.85□□□□□ -2.11
VPS29-202ENST00000447578 Q5VSD8 79 aa1.85□□□□□ -2.11
VPS29-202ENST00000447578 KRTAP4-1Q9BYQ7 146 aa1.85□□□□□ -2.11
VPS29-202ENST00000447578 CSMD3Q7Z407 3707 aa1.85□□□□□ -2.11
VPS29-202ENST00000447578 KMT2AQ03164 3969 aa1.84□□□□□ -2.11
VPS29-202ENST00000447578 SPATA8Q6RVD6 105 aa1.84□□□□□ -2.11
VPS29-202ENST00000447578 FAT2Q9NYQ8 4349 aa1.83□□□□□ -2.12
VPS29-202ENST00000447578 UQCR11O14957 56 aa1.83□□□□□ -2.12
VPS29-202ENST00000447578 LRP1BQ9NZR2 4599 aa1.82□□□□□ -2.12
VPS29-202ENST00000447578 DNAH5Q8TE73 4624 aa1.82□□□□□ -2.12
VPS29-202ENST00000447578 COX6B2Q6YFQ2 88 aa1.82□□□□□ -2.12
VPS29-202ENST00000447578 SACSQ9NZJ4 4579 aa1.82□□□□□ -2.12
VPS29-202ENST00000447578 RPL37P61927 97 aaKnown RBP1.81□□□□□ -2.12
VPS29-202ENST00000447578 TENM2Q9NT68 2774 aa1.81□□□□□ -2.12
VPS29-202ENST00000447578 FRAS1Q86XX4 4008 aa1.81□□□□□ -2.12
VPS29-202ENST00000447578 FBN3Q75N90 2809 aa1.81□□□□□ -2.12
VPS29-202ENST00000447578 MEGF8Q7Z7M0 2845 aa1.81□□□□□ -2.12
VPS29-202ENST00000447578 PKD1P98161 4303 aa1.8□□□□□ -2.12
VPS29-202ENST00000447578 SRRM2Q9UQ35 2752 aaKnown RBP1.8□□□□□ -2.12
VPS29-202ENST00000447578 HYDINQ4G0P3 5121 aa1.8□□□□□ -2.12
VPS29-202ENST00000447578 H1FX-AS1Q4G0G2 97 aa1.79□□□□□ -2.12
VPS29-202ENST00000447578 MT1HL1P0DM35 61 aa1.78□□□□□ -2.12
VPS29-202ENST00000447578 DNHD1Q96M86 4753 aa1.78□□□□□ -2.12
VPS29-202ENST00000447578 HECTD4Q9Y4D8 3996 aa1.78□□□□□ -2.12
VPS29-202ENST00000447578 H0YAA0 97 aa1.77□□□□□ -2.13
VPS29-202ENST00000447578 KRTAP6-3Q3LI67 103 aa1.76□□□□□ -2.13
VPS29-202ENST00000447578 S4R3F8 94 aa1.76□□□□□ -2.13
VPS29-202ENST00000447578 PKHD1L1Q86WI1 4243 aa1.76□□□□□ -2.13
VPS29-202ENST00000447578 DYNC1H1Q14204 4646 aaKnown RBP1.75□□□□□ -2.13
VPS29-202ENST00000447578 APOBP04114 4563 aaKnown RBP1.74□□□□□ -2.13
VPS29-202ENST00000447578 KRTAP13-4Q3LI77 160 aa1.74□□□□□ -2.13
VPS29-202ENST00000447578 VPS13BQ7Z7G8 4022 aa1.73□□□□□ -2.13
VPS29-202ENST00000447578 TGP01266 2768 aa1.73□□□□□ -2.13
VPS29-202ENST00000447578 KRTAP12-4P60329 112 aa1.73□□□□□ -2.13
VPS29-202ENST00000447578 CSAG1Q6PB30 78 aa1.73□□□□□ -2.13
VPS29-202ENST00000447578 A0A0D9SG42 100 aa1.72□□□□□ -2.13
VPS29-202ENST00000447578 ROMO1P60602 79 aa1.72□□□□□ -2.13
VPS29-202ENST00000447578 FAT1Q14517 4588 aa1.71□□□□□ -2.14
VPS29-202ENST00000447578 KRTAP12-1P59990 96 aa1.71□□□□□ -2.14
VPS29-202ENST00000447578 FLG2Q5D862 2391 aaPredicted RBP1.71□□□□□ -2.14
VPS29-202ENST00000447578 PKHD1P08F94 4074 aa1.7□□□□□ -2.14
VPS29-202ENST00000447578 FCGBPQ9Y6R7 5405 aaPredicted RBP1.69□□□□□ -2.14
VPS29-202ENST00000447578 HSPG2P98160 4391 aa1.68□□□□□ -2.14
VPS29-202ENST00000447578 RYR2Q92736 4967 aa1.68□□□□□ -2.14
VPS29-202ENST00000447578 CRIPTQ9P021 101 aa1.68□□□□□ -2.14
VPS29-202ENST00000447578 FAT3Q8TDW7 4589 aa1.67□□□□□ -2.14
VPS29-202ENST00000447578 TNXBP22105 4242 aa1.67□□□□□ -2.14
VPS29-202ENST00000447578 KRTAP12-3P60328 96 aa1.67□□□□□ -2.14
VPS29-202ENST00000447578 M0QZ58 72 aa1.65□□□□□ -2.15
VPS29-202ENST00000447578 LRP1Q07954 4544 aaKnown RBP1.63□□□□□ -2.15
VPS29-202ENST00000447578 C10orf95Q9H7T3 257 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms