RNA–Protein interactions for RNA: ENST00000445497.1

UBBP3-201, Transcript of ubiquitin B pseudogene 3, humanhuman

BASIC

Gene UBBP3, Length 241 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP3-201ENST00000445497 SPRR2FQ96RM1 72 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 PDZD2O15018 2839 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 PKD1L1Q8TDX9 2849 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 CUBNO60494 3623 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 COL6A3P12111 3177 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 CEP350Q5VT06 3117 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 HIVEP1P15822 2718 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 TACC2O95359 2948 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 TRIOO75962 3097 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 MGAM2Q2M2H8 2515 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 MT1EP04732 61 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 KRTAP21-1Q3LI58 79 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 KRTAP6-2Q3LI66 62 aa0.6□□□□□ -2.31
UBBP3-201ENST00000445497 DMXL2Q8TDJ6 3036 aa0.59□□□□□ -2.31
UBBP3-201ENST00000445497 ITPR2Q14571 2701 aa0.59□□□□□ -2.31
UBBP3-201ENST00000445497 TEP1Q99973 2627 aaKnown RBP0.59□□□□□ -2.31
UBBP3-201ENST00000445497 SPRR2EP22531 72 aa0.59□□□□□ -2.31
UBBP3-201ENST00000445497 KRTAP5-4Q6L8H1 288 aa0.59□□□□□ -2.31
UBBP3-201ENST00000445497 DNAH10Q8IVF4 4471 aa0.59□□□□□ -2.32
UBBP3-201ENST00000445497 STAB2Q8WWQ8 2551 aa0.59□□□□□ -2.32
UBBP3-201ENST00000445497 DNAH2Q9P225 4427 aa0.59□□□□□ -2.32
UBBP3-201ENST00000445497 MAST4O15021 2626 aa0.59□□□□□ -2.32
UBBP3-201ENST00000445497 RELNP78509 3460 aa0.59□□□□□ -2.32
UBBP3-201ENST00000445497 PKHD1L1Q86WI1 4243 aa0.59□□□□□ -2.32
UBBP3-201ENST00000445497 SVEP1Q4LDE5 3571 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 PRUNE2Q8WUY3 3088 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 HTTP42858 3142 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 ZANQ9Y493 2812 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 DMXL1Q9Y485 3027 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 CSMD1Q96PZ7 3565 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 ATMQ13315 3056 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 KRTAP4-4Q9BYR3 166 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 NBEAQ8NFP9 2946 aa0.58□□□□□ -2.32
UBBP3-201ENST00000445497 SPTAN1Q13813 2472 aaKnown RBP0.58□□□□□ -2.32
UBBP3-201ENST00000445497 TLN1Q9Y490 2541 aaKnown RBP0.58□□□□□ -2.32
UBBP3-201ENST00000445497 CEP295Q9C0D2 2601 aa0.57□□□□□ -2.32
UBBP3-201ENST00000445497 CMYA5Q8N3K9 4069 aa0.57□□□□□ -2.32
UBBP3-201ENST00000445497 SPENQ96T58 3664 aaKnown RBP0.57□□□□□ -2.32
UBBP3-201ENST00000445497 LRBAP50851 2863 aa0.57□□□□□ -2.32
UBBP3-201ENST00000445497 ZZEF1O43149 2961 aa0.57□□□□□ -2.32
UBBP3-201ENST00000445497 KRTAP4-3Q9BYR4 195 aa0.57□□□□□ -2.32
UBBP3-201ENST00000445497 MKI67P46013 3256 aaKnown RBP0.57□□□□□ -2.32
UBBP3-201ENST00000445497 FRAS1Q86XX4 4008 aa0.57□□□□□ -2.32
UBBP3-201ENST00000445497 MT1LQ93083 61 aa0.56□□□□□ -2.32
UBBP3-201ENST00000445497 SPRR2GQ9BYE4 73 aa0.56□□□□□ -2.32
UBBP3-201ENST00000445497 HUWE1Q7Z6Z7 4374 aaKnown RBP0.56□□□□□ -2.32
UBBP3-201ENST00000445497 DNAH7Q8WXX0 4024 aa0.56□□□□□ -2.32
UBBP3-201ENST00000445497 FREM2Q5SZK8 3169 aa0.55□□□□□ -2.32
UBBP3-201ENST00000445497 DNAH12Q6ZR08 3092 aa0.55□□□□□ -2.32
UBBP3-201ENST00000445497 MT1HP80294 61 aa0.55□□□□□ -2.32
UBBP3-201ENST00000445497 LAMA3Q16787 3333 aa0.55□□□□□ -2.32
UBBP3-201ENST00000445497 DNAH9Q9NYC9 4486 aa0.55□□□□□ -2.32
UBBP3-201ENST00000445497 HSPG2P98160 4391 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 IGSF10Q6WRI0 2623 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 MYO9AB2RTY4 2548 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 KALRNO60229 2985 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 C5orf42Q9H799 3197 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 FAT3Q8TDW7 4589 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 OBSCNQ5VST9 7968 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 PKD1P98161 4303 aa0.54□□□□□ -2.32
UBBP3-201ENST00000445497 BOD1L1Q8NFC6 3051 aa0.53□□□□□ -2.32
UBBP3-201ENST00000445497 PLECQ15149 4684 aaKnown RBP0.53□□□□□ -2.32
UBBP3-201ENST00000445497 DNAH1Q9P2D7 4330 aa0.53□□□□□ -2.32
UBBP3-201ENST00000445497 FLGP20930 4061 aaPredicted RBP0.53□□□□□ -2.32
UBBP3-201ENST00000445497 SPTBN5Q9NRC6 3674 aaKnown RBP0.53□□□□□ -2.32
UBBP3-201ENST00000445497 KRTAP5-9P26371 169 aa0.53□□□□□ -2.32
UBBP3-201ENST00000445497 KRTAP5-7Q6L8G8 165 aa0.53□□□□□ -2.32
UBBP3-201ENST00000445497 TENM3Q9P273 2699 aa0.53□□□□□ -2.32
UBBP3-201ENST00000445497 MXRA5Q9NR99 2828 aa0.53□□□□□ -2.32
UBBP3-201ENST00000445497 LPAP08519 4548 aa0.53□□□□□ -2.33
UBBP3-201ENST00000445497 LRP1Q07954 4544 aaKnown RBP0.53□□□□□ -2.33
UBBP3-201ENST00000445497 SYNE1Q8NF91 8797 aaKnown RBP0.52□□□□□ -2.33
UBBP3-201ENST00000445497 SRCAPQ6ZRS2 3230 aa0.52□□□□□ -2.33
UBBP3-201ENST00000445497 DNAH6Q9C0G6 4158 aa0.52□□□□□ -2.33
UBBP3-201ENST00000445497 APOBP04114 4563 aaKnown RBP0.52□□□□□ -2.33
UBBP3-201ENST00000445497 DMDP11532 3685 aa0.51□□□□□ -2.33
UBBP3-201ENST00000445497 KRTAP5-2Q701N4 177 aa0.51□□□□□ -2.33
UBBP3-201ENST00000445497 HRNRQ86YZ3 2850 aaPredicted RBP0.51□□□□□ -2.33
UBBP3-201ENST00000445497 SMG1Q96Q15 3661 aaKnown RBP0.51□□□□□ -2.33
UBBP3-201ENST00000445497 VPS13AQ96RL7 3174 aa0.51□□□□□ -2.33
UBBP3-201ENST00000445497 DCHS1Q96JQ0 3298 aa0.51□□□□□ -2.33
UBBP3-201ENST00000445497 HECTD4Q9Y4D8 3996 aa0.5□□□□□ -2.33
UBBP3-201ENST00000445497 XIRP2A4UGR9 3374 aa0.5□□□□□ -2.33
UBBP3-201ENST00000445497 HERC1Q15751 4861 aa0.5□□□□□ -2.33
UBBP3-201ENST00000445497 SPEGQ15772 3267 aa0.5□□□□□ -2.33
UBBP3-201ENST00000445497 LAMA1P25391 3075 aa0.49□□□□□ -2.33
UBBP3-201ENST00000445497 DNAH17Q9UFH2 4485 aa0.49□□□□□ -2.33
UBBP3-201ENST00000445497 TENM1Q9UKZ4 2725 aa0.49□□□□□ -2.33
UBBP3-201ENST00000445497 KRTAP5-8O75690 187 aa0.49□□□□□ -2.33
UBBP3-201ENST00000445497 WDFY4Q6ZS81 3184 aa0.49□□□□□ -2.33
UBBP3-201ENST00000445497 GOLGB1Q14789 3259 aaKnown RBP0.48□□□□□ -2.33
UBBP3-201ENST00000445497 LOC400499M0QZD8 3231 aa0.48□□□□□ -2.33
UBBP3-201ENST00000445497 ADGRG4Q8IZF6 3080 aa0.47□□□□□ -2.33
UBBP3-201ENST00000445497 PKHD1P08F94 4074 aa0.47□□□□□ -2.33
UBBP3-201ENST00000445497 MT1XP80297 61 aa0.47□□□□□ -2.33
UBBP3-201ENST00000445497 EP400Q96L91 3159 aa0.47□□□□□ -2.33
UBBP3-201ENST00000445497 FAT1Q14517 4588 aa0.47□□□□□ -2.33
UBBP3-201ENST00000445497 CFAP47Q6ZTR5 3102 aa0.47□□□□□ -2.33
UBBP3-201ENST00000445497 MUC3AQ02505 3323 aa0.46□□□□□ -2.34
UBBP3-201ENST00000445497 KRTAP19-8Q3LI54 63 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms