RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 COA4Q8BT51 87 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gm33815A0A087WNV3 176 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Brd3osA0A1B0GRB6 84 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Znf664Q4VA44 261 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Prss22Q9ER10 306 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igkv4-62A0A0G2JDW9 117 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Zfp36l2P23949 484 aaKnown RBP13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Parm1Q923D3 296 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Pmaip1Q9JM54 103 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ccl17F6R5P4 103 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Efna4O08542 206 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Fxyd1Q9Z239 92 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Pth2Q91W27 100 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Shisa9Q9CZN4 424 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ca1P13634 261 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Sigmar1O55242 223 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 P01896 185 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ankrd39Q9D2X0 183 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gm20878L7N244 103 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Csrp1P97315 193 aaKnown RBP13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 H1fxQ80ZM5 188 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Q8R092 253 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Supt4h1bQ9Z199 117 aa13.49□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Trav7-1A0A0G2JEV5 112 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Q91WE4 72 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ighv1-80A0A075B5Y3 117 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 ApomQ9Z1R3 190 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Wt1P22561 449 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ndufa11Q9D8B4 141 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ighv1-36A0A0A6YXT2 117 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 BC035044E0CXF8 138 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Eid2bE9Q2Y0 151 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ccl3P10855 92 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igkv4-68A0A0B4J1I7 117 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 9130213A22RikQ3V3T2 120 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 PolqQ8CGS6 2544 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Foxh1O88621 401 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ypel3P61237 119 aa13.48□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igkv14-126A0A075B5K0 117 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Cpsf4lE9Q2N0 280 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igkv4-57-1A0A075B5M4 119 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 KncnQ307W7 124 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 OtosQ8R448 89 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Trav14d-3-dv8A0A075B619 120 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Rasl10aQ8K5A4 203 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 PolP10400 120 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gm20481G3UXK4 153 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Plscr4P58196 326 aa13.47□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ighv1-39A0A075B5V5 117 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ighv1-23A0A0A6YVW3 117 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Rnf114Q9ET26 229 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igkv13-85A0A075B666 115 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Wipf2Q6PEV3 440 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Foxi1Q922I5 372 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Tmem92B7ZWI3 162 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Trav3-4A0A075B654 114 aa13.46□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 P01724 129 aa13.46□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ttc9cQ810A3 171 aa13.45□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Gm10188Q3V432 135 aa13.45□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Rpp25lQ99JH1 163 aa13.45□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 B230307C23RikQ8BLB2 64 aa13.45□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Tctex1d4Q8CDY7 219 aa13.45□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Atp6v0bQ91V37 205 aa13.45□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Hcfc1Q61191 2045 aaKnown RBP13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Pate4Q09098 99 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 BB014433Q8C5R5 389 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Fgf4P11403 202 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Slc25a47Q6IS41 310 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Pip4p2Q9CZX7 257 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ighv1-9A0A0A6YW37 117 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ighv1-62-3P01754 117 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Svs5P30933 122 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 P01727 129 aa13.44□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Trav14n-2A0A0G2JDF5 121 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Wdr86D3Z757 380 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Rspo3Q2TJ95 277 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 SprnQ8BWU1 147 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Igkv3-9A0A140T8P4 119 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ear14F6YUX7 155 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 ElaneQ3UP87 265 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Igkv6-23A0A140T8N5 115 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Gm5105Q8C6Y9 112 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ifitm1Q9D103 106 aa13.43□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Gm5294J3QP53 216 aa13.42□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ighv5-9-1A0A0A6YVS4 126 aa13.42□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Gm27027S4R1M6 97 aa13.42□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Pygo2Q80V76 405 aa13.42□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 RtbdnQ8QZY4 247 aa13.42□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Card19Q9D1I2 183 aa13.42□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 P01660 111 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Tcf15Q60756 195 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Gdf15Q9Z0J7 303 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 P04946 108 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 PcolceQ61398 468 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Shisal2aA2A9G7 189 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ighv8-6A0A0A6YXA3 118 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 BmperQ8CJ69 685 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ndufs7Q9DC70 224 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Wdr90Q6ZPG2 1874 aa13.41□□□□□ -0.26
Ccdc88a-201ENSMUST00000040182 Ighv1-69A0A0G2JFS5 117 aa13.41□□□□□ -0.26
Retrieved 100 of 22,080 RNA–protein pairs in 45 ms