Protein–RNA interactions for Protein: A0A0A6YVW3

Ighv1-23, Immunoglobulin heavy variable V1-23 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ighv1-23A0A0A6YVW3 Gm25239-201ENSMUST00000174915 86 ntBASIC25.73■■□□□ 1.71
Ighv1-23A0A0A6YVW3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ighv1-23A0A0A6YVW3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
Ighv1-23A0A0A6YVW3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ighv1-23A0A0A6YVW3 Psd-208ENSMUST00000224556 2034 ntBASIC24.08■■□□□ 1.45
Ighv1-23A0A0A6YVW3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ighv1-23A0A0A6YVW3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Ighv1-23A0A0A6YVW3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ighv1-23A0A0A6YVW3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ighv1-23A0A0A6YVW3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ighv1-23A0A0A6YVW3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ighv1-23A0A0A6YVW3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ighv1-23A0A0A6YVW3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ighv1-23A0A0A6YVW3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ighv1-23A0A0A6YVW3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ighv1-23A0A0A6YVW3 Gm15042-201ENSMUST00000120212 883 ntBASIC22.91■■□□□ 1.26
Ighv1-23A0A0A6YVW3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.82■■□□□ 1.24
Ighv1-23A0A0A6YVW3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ighv1-23A0A0A6YVW3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ighv1-23A0A0A6YVW3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ighv1-23A0A0A6YVW3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ighv1-23A0A0A6YVW3 Gm15045-201ENSMUST00000117359 883 ntBASIC22.43■■□□□ 1.18
Ighv1-23A0A0A6YVW3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ighv1-23A0A0A6YVW3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ighv1-23A0A0A6YVW3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ighv1-23A0A0A6YVW3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Ighv1-23A0A0A6YVW3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ighv1-23A0A0A6YVW3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.11■■□□□ 1.13
Ighv1-23A0A0A6YVW3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ighv1-23A0A0A6YVW3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ighv1-23A0A0A6YVW3 Gm24109-201ENSMUST00000175489 103 ntBASIC22.07■■□□□ 1.12
Ighv1-23A0A0A6YVW3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.06■■□□□ 1.12
Ighv1-23A0A0A6YVW3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ighv1-23A0A0A6YVW3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ighv1-23A0A0A6YVW3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ighv1-23A0A0A6YVW3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22■■□□□ 1.11
Ighv1-23A0A0A6YVW3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ighv1-23A0A0A6YVW3 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.84■■□□□ 1.09
Ighv1-23A0A0A6YVW3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ighv1-23A0A0A6YVW3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ighv1-23A0A0A6YVW3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ighv1-23A0A0A6YVW3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.72■■□□□ 1.07
Ighv1-23A0A0A6YVW3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ighv1-23A0A0A6YVW3 Gm23366-201ENSMUST00000175022 89 ntBASIC21.59■■□□□ 1.05
Ighv1-23A0A0A6YVW3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ighv1-23A0A0A6YVW3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.55■■□□□ 1.04
Ighv1-23A0A0A6YVW3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ighv1-23A0A0A6YVW3 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.52■■□□□ 1.04
Ighv1-23A0A0A6YVW3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ighv1-23A0A0A6YVW3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ighv1-23A0A0A6YVW3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ighv1-23A0A0A6YVW3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ighv1-23A0A0A6YVW3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ighv1-23A0A0A6YVW3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ighv1-23A0A0A6YVW3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ighv1-23A0A0A6YVW3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ighv1-23A0A0A6YVW3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ighv1-23A0A0A6YVW3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ighv1-23A0A0A6YVW3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ighv1-23A0A0A6YVW3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ighv1-23A0A0A6YVW3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ighv1-23A0A0A6YVW3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.16■□□□□ 0.98
Ighv1-23A0A0A6YVW3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ighv1-23A0A0A6YVW3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ighv1-23A0A0A6YVW3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Ighv1-23A0A0A6YVW3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.04■□□□□ 0.96
Ighv1-23A0A0A6YVW3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ighv1-23A0A0A6YVW3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ighv1-23A0A0A6YVW3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Ighv1-23A0A0A6YVW3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ighv1-23A0A0A6YVW3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ighv1-23A0A0A6YVW3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ighv1-23A0A0A6YVW3 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ighv1-23A0A0A6YVW3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ighv1-23A0A0A6YVW3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ighv1-23A0A0A6YVW3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ighv1-23A0A0A6YVW3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Ighv1-23A0A0A6YVW3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ighv1-23A0A0A6YVW3 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ighv1-23A0A0A6YVW3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ighv1-23A0A0A6YVW3 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ighv1-23A0A0A6YVW3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Ighv1-23A0A0A6YVW3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ighv1-23A0A0A6YVW3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ighv1-23A0A0A6YVW3 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ighv1-23A0A0A6YVW3 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Ighv1-23A0A0A6YVW3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ighv1-23A0A0A6YVW3 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ighv1-23A0A0A6YVW3 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ighv1-23A0A0A6YVW3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.46■□□□□ 0.87
Ighv1-23A0A0A6YVW3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ighv1-23A0A0A6YVW3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ighv1-23A0A0A6YVW3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.39■□□□□ 0.86
Ighv1-23A0A0A6YVW3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ighv1-23A0A0A6YVW3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.39■□□□□ 0.85
Ighv1-23A0A0A6YVW3 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ighv1-23A0A0A6YVW3 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ighv1-23A0A0A6YVW3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Ighv1-23A0A0A6YVW3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ighv1-23A0A0A6YVW3 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms