Protein–RNA interactions for Protein: A0A075B654

Trav3-4, T cell receptor alpha variable 3-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-4A0A075B654 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav3-4A0A075B654 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trav3-4A0A075B654 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Trav3-4A0A075B654 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav3-4A0A075B654 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav3-4A0A075B654 Psd-208ENSMUST00000224556 2034 ntBASIC21.15■□□□□ 0.98
Trav3-4A0A075B654 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
Trav3-4A0A075B654 Gm25239-201ENSMUST00000174915 86 ntBASIC20.39■□□□□ 0.85
Trav3-4A0A075B654 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav3-4A0A075B654 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav3-4A0A075B654 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav3-4A0A075B654 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav3-4A0A075B654 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trav3-4A0A075B654 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav3-4A0A075B654 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trav3-4A0A075B654 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav3-4A0A075B654 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav3-4A0A075B654 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav3-4A0A075B654 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trav3-4A0A075B654 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trav3-4A0A075B654 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav3-4A0A075B654 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav3-4A0A075B654 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav3-4A0A075B654 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav3-4A0A075B654 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav3-4A0A075B654 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav3-4A0A075B654 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav3-4A0A075B654 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav3-4A0A075B654 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC19.42■□□□□ 0.7
Trav3-4A0A075B654 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav3-4A0A075B654 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav3-4A0A075B654 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trav3-4A0A075B654 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav3-4A0A075B654 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav3-4A0A075B654 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav3-4A0A075B654 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.19■□□□□ 0.66
Trav3-4A0A075B654 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.19■□□□□ 0.66
Trav3-4A0A075B654 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav3-4A0A075B654 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.19■□□□□ 0.66
Trav3-4A0A075B654 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav3-4A0A075B654 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.04■□□□□ 0.64
Trav3-4A0A075B654 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Trav3-4A0A075B654 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Trav3-4A0A075B654 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav3-4A0A075B654 Gm10524-201ENSMUST00000181931 1893 ntBASIC18.94■□□□□ 0.62
Trav3-4A0A075B654 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav3-4A0A075B654 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-4A0A075B654 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trav3-4A0A075B654 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav3-4A0A075B654 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav3-4A0A075B654 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC18.83■□□□□ 0.6
Trav3-4A0A075B654 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3-4A0A075B654 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3-4A0A075B654 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3-4A0A075B654 Gm15042-201ENSMUST00000120212 883 ntBASIC18.78■□□□□ 0.6
Trav3-4A0A075B654 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3-4A0A075B654 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC18.74■□□□□ 0.59
Trav3-4A0A075B654 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav3-4A0A075B654 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav3-4A0A075B654 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav3-4A0A075B654 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trav3-4A0A075B654 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav3-4A0A075B654 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav3-4A0A075B654 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav3-4A0A075B654 Zxda-201ENSMUST00000117281 2621 ntBASIC18.53■□□□□ 0.56
Trav3-4A0A075B654 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav3-4A0A075B654 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trav3-4A0A075B654 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav3-4A0A075B654 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3-4A0A075B654 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.48■□□□□ 0.55
Trav3-4A0A075B654 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav3-4A0A075B654 Gm15045-201ENSMUST00000117359 883 ntBASIC18.47■□□□□ 0.55
Trav3-4A0A075B654 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.45■□□□□ 0.54
Trav3-4A0A075B654 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav3-4A0A075B654 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav3-4A0A075B654 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav3-4A0A075B654 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav3-4A0A075B654 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav3-4A0A075B654 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav3-4A0A075B654 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trav3-4A0A075B654 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav3-4A0A075B654 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav3-4A0A075B654 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav3-4A0A075B654 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav3-4A0A075B654 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav3-4A0A075B654 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav3-4A0A075B654 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trav3-4A0A075B654 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav3-4A0A075B654 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav3-4A0A075B654 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav3-4A0A075B654 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Trav3-4A0A075B654 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav3-4A0A075B654 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav3-4A0A075B654 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Trav3-4A0A075B654 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav3-4A0A075B654 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav3-4A0A075B654 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav3-4A0A075B654 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trav3-4A0A075B654 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18.18■□□□□ 0.5
Trav3-4A0A075B654 CT025624.2-201ENSMUST00000223609 1909 ntBASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms