RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 PKD1L1Q8TDX9 2849 aa5.16□□□□□ -1.58
CSMD1-216ENST00000602557 KRTAP29-1A8MX34 341 aaPredicted RBP5.15□□□□□ -1.58
CSMD1-216ENST00000602557 SPRR1BP22528 89 aa5.13□□□□□ -1.59
CSMD1-216ENST00000602557 M0QZ58 72 aa5.13□□□□□ -1.59
CSMD1-216ENST00000602557 ADGRG4Q8IZF6 3080 aa5.13□□□□□ -1.59
CSMD1-216ENST00000602557 Q5VSD8 79 aa5.12□□□□□ -1.59
CSMD1-216ENST00000602557 A8MUU9 505 aa5.12□□□□□ -1.59
CSMD1-216ENST00000602557 PLAC4Q8WY50 150 aa5.11□□□□□ -1.59
CSMD1-216ENST00000602557 UNC80Q8N2C7 3258 aa5.11□□□□□ -1.59
CSMD1-216ENST00000602557 HRNRQ86YZ3 2850 aaPredicted RBP5.1□□□□□ -1.59
CSMD1-216ENST00000602557 A0A087X002 238 aa5.1□□□□□ -1.59
CSMD1-216ENST00000602557 NOTCH2NLQ7Z3S9 236 aa5.1□□□□□ -1.59
CSMD1-216ENST00000602557 PANO1I0J062 215 aa5.1□□□□□ -1.59
CSMD1-216ENST00000602557 TGP01266 2768 aa5.1□□□□□ -1.59
CSMD1-216ENST00000602557 KRTAP10-1P60331 282 aa5.09□□□□□ -1.59
CSMD1-216ENST00000602557 KRTAP10-2P60368 255 aa5.08□□□□□ -1.6
CSMD1-216ENST00000602557 SEC61BP60468 96 aaKnown RBP5.08□□□□□ -1.6
CSMD1-216ENST00000602557 C20orf166-AS1Q96NR2 134 aa5.08□□□□□ -1.6
CSMD1-216ENST00000602557 SRRM2Q9UQ35 2752 aaKnown RBP5.06□□□□□ -1.6
CSMD1-216ENST00000602557 LCE6AA0A183 80 aa5.06□□□□□ -1.6
CSMD1-216ENST00000602557 USP34Q70CQ2 3546 aa5.05□□□□□ -1.6
CSMD1-216ENST00000602557 DNAH14Q0VDD8 3507 aa5.05□□□□□ -1.6
CSMD1-216ENST00000602557 CDH23Q9H251 3354 aa5.05□□□□□ -1.6
CSMD1-216ENST00000602557 MXRA5Q9NR99 2828 aa5.04□□□□□ -1.6
CSMD1-216ENST00000602557 DMXL1Q9Y485 3027 aa5.03□□□□□ -1.6
CSMD1-216ENST00000602557 VCANP13611 3396 aa5.03□□□□□ -1.6
CSMD1-216ENST00000602557 KRTAP4-16G5E9R7 235 aaPredicted RBP5.02□□□□□ -1.61
CSMD1-216ENST00000602557 C10orf95Q9H7T3 257 aa5.01□□□□□ -1.61
CSMD1-216ENST00000602557 CFAP47Q6ZTR5 3102 aa5.01□□□□□ -1.61
CSMD1-216ENST00000602557 CELSR1Q9NYQ6 3014 aa4.99□□□□□ -1.61
CSMD1-216ENST00000602557 KRTAP11-1Q8IUC1 163 aa4.99□□□□□ -1.61
CSMD1-216ENST00000602557 SZT2Q5T011 3432 aa4.94□□□□□ -1.62
CSMD1-216ENST00000602557 TENM2Q9NT68 2774 aa4.93□□□□□ -1.62
CSMD1-216ENST00000602557 EYSQ5T1H1 3165 aa4.92□□□□□ -1.62
CSMD1-216ENST00000602557 MYO15AQ9UKN7 3530 aa4.9□□□□□ -1.62
CSMD1-216ENST00000602557 SPTBN5Q9NRC6 3674 aaKnown RBP4.88□□□□□ -1.63
CSMD1-216ENST00000602557 SPEGQ15772 3267 aa4.88□□□□□ -1.63
CSMD1-216ENST00000602557 H0YAA0 97 aa4.84□□□□□ -1.63
CSMD1-216ENST00000602557 KRTAP13-2Q52LG2 175 aa4.82□□□□□ -1.64
CSMD1-216ENST00000602557 Q6ZRN7 208 aaPredicted RBP4.82□□□□□ -1.64
CSMD1-216ENST00000602557 KRTAP7-1Q8IUC3 87 aa4.82□□□□□ -1.64
CSMD1-216ENST00000602557 FBN1P35555 2871 aaKnown RBP4.81□□□□□ -1.64
CSMD1-216ENST00000602557 RPS29P62273 56 aaKnown RBP4.81□□□□□ -1.64
CSMD1-216ENST00000602557 P0C880 135 aa4.8□□□□□ -1.64
CSMD1-216ENST00000602557 COL7A1Q02388 2944 aa4.8□□□□□ -1.64
CSMD1-216ENST00000602557 WDFY3Q8IZQ1 3526 aa4.77□□□□□ -1.65
CSMD1-216ENST00000602557 KRTAP13-1Q8IUC0 172 aa4.76□□□□□ -1.65
CSMD1-216ENST00000602557 KRTAP10-8P60410 259 aa4.73□□□□□ -1.65
CSMD1-216ENST00000602557 TNP1P09430 55 aa4.7□□□□□ -1.66
CSMD1-216ENST00000602557 ZFHX3Q15911 3703 aa4.65□□□□□ -1.67
CSMD1-216ENST00000602557 PP632Q6XCG6 107 aa4.65□□□□□ -1.67
CSMD1-216ENST00000602557 LOC400499M0QZD8 3231 aa4.64□□□□□ -1.67
CSMD1-216ENST00000602557 NBPF19A0A087WUL8 3843 aa4.64□□□□□ -1.67
CSMD1-216ENST00000602557 FBN3Q75N90 2809 aa4.63□□□□□ -1.67
CSMD1-216ENST00000602557 MEGF8Q7Z7M0 2845 aa4.62□□□□□ -1.67
CSMD1-216ENST00000602557 DMDP11532 3685 aa4.59□□□□□ -1.67
CSMD1-216ENST00000602557 SMG1Q96Q15 3661 aaKnown RBP4.58□□□□□ -1.68
CSMD1-216ENST00000602557 XP32Q5T750 250 aa4.56□□□□□ -1.68
CSMD1-216ENST00000602557 DCHS1Q96JQ0 3298 aa4.56□□□□□ -1.68
CSMD1-216ENST00000602557 LAMA5O15230 3695 aa4.56□□□□□ -1.68
CSMD1-216ENST00000602557 A0A1B0GVY2 172 aa4.55□□□□□ -1.68
CSMD1-216ENST00000602557 ZFHX4Q86UP3 3567 aa4.55□□□□□ -1.68
CSMD1-216ENST00000602557 TPRXLQ17RH7 258 aa4.55□□□□□ -1.68
CSMD1-216ENST00000602557 OTOGQ6ZRI0 2925 aa4.52□□□□□ -1.69
CSMD1-216ENST00000602557 ASPMQ8IZT6 3477 aa4.52□□□□□ -1.69
CSMD1-216ENST00000602557 KRTAP1-4P0C5Y4 121 aa4.52□□□□□ -1.69
CSMD1-216ENST00000602557 SPENQ96T58 3664 aaKnown RBP4.51□□□□□ -1.69
CSMD1-216ENST00000602557 RELNP78509 3460 aa4.49□□□□□ -1.69
CSMD1-216ENST00000602557 KRTAP12-2P59991 146 aa4.49□□□□□ -1.69
CSMD1-216ENST00000602557 KRTAP10-10P60014 251 aa4.44□□□□□ -1.7
CSMD1-216ENST00000602557 AKAP9Q99996 3911 aa4.42□□□□□ -1.7
CSMD1-216ENST00000602557 CSMD1Q96PZ7 3565 aa4.4□□□□□ -1.7
CSMD1-216ENST00000602557 TRRAPQ9Y4A5 3859 aa4.39□□□□□ -1.71
CSMD1-216ENST00000602557 PRO2289Q9P1D8 64 aa4.39□□□□□ -1.71
CSMD1-216ENST00000602557 KRTAP13-3Q3SY46 172 aa4.37□□□□□ -1.71
CSMD1-216ENST00000602557 VPS13CQ709C8 3753 aa4.36□□□□□ -1.71
CSMD1-216ENST00000602557 KRTAP21-3Q3LHN1 58 aa4.35□□□□□ -1.71
CSMD1-216ENST00000602557 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
CSMD1-216ENST00000602557 KRTAP12-1P59990 96 aa4.32□□□□□ -1.72
CSMD1-216ENST00000602557 KRTAP13-4Q3LI77 160 aa4.29□□□□□ -1.72
CSMD1-216ENST00000602557 CUBNO60494 3623 aa4.29□□□□□ -1.72
CSMD1-216ENST00000602557 SVEP1Q4LDE5 3571 aa4.25□□□□□ -1.73
CSMD1-216ENST00000602557 ALMS1Q8TCU4 4167 aa4.23□□□□□ -1.73
CSMD1-216ENST00000602557 INE1O15225 51 aa4.18□□□□□ -1.74
CSMD1-216ENST00000602557 KRTAP3-1Q9BYR8 98 aa4.16□□□□□ -1.74
CSMD1-216ENST00000602557 CSMD3Q7Z407 3707 aa4.13□□□□□ -1.75
CSMD1-216ENST00000602557 MUC3AQ02505 3323 aa4.13□□□□□ -1.75
CSMD1-216ENST00000602557 KRTAP10-6P60371 365 aaPredicted RBP4.11□□□□□ -1.75
CSMD1-216ENST00000602557 BSNQ9UPA5 3926 aa4.07□□□□□ -1.76
CSMD1-216ENST00000602557 DNAH3Q8TD57 4116 aa4.07□□□□□ -1.76
CSMD1-216ENST00000602557 CMYA5Q8N3K9 4069 aa4.06□□□□□ -1.76
CSMD1-216ENST00000602557 CSMD2Q7Z408 3487 aa4.02□□□□□ -1.77
CSMD1-216ENST00000602557 LYSTQ99698 3801 aa4□□□□□ -1.77
CSMD1-216ENST00000602557 HECTD4Q9Y4D8 3996 aa3.97□□□□□ -1.77
CSMD1-216ENST00000602557 KRTAP3-2Q9BYR7 98 aa3.95□□□□□ -1.78
CSMD1-216ENST00000602557 ZNF469Q96JG9 3925 aaPredicted RBP3.9□□□□□ -1.79
CSMD1-216ENST00000602557 CRCT1Q9UGL9 99 aa3.9□□□□□ -1.79
CSMD1-216ENST00000602557 DNAH7Q8WXX0 4024 aa3.9□□□□□ -1.79
CSMD1-216ENST00000602557 KRTAP10-12P60413 245 aa3.88□□□□□ -1.79
CSMD1-216ENST00000602557 KRTAP3-3Q9BYR6 98 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms